Wall clock time and date at job start Wed Apr 1 2020 00:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47073 * 2 1 4 4 H 1.08994 * 109.47242 * 304.99840 * 3 2 1 5 5 O 1.42904 * 109.47289 * 64.99637 * 3 2 1 6 6 C 1.42899 * 114.00168 * 270.00248 * 5 3 2 7 7 C 1.53007 * 109.46961 * 269.99712 * 6 5 3 8 8 C 1.53002 * 109.47036 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47014 * 60.00055 * 8 7 6 10 10 C 1.52998 * 109.47304 * 300.00039 * 9 8 7 11 11 C 1.52997 * 109.47222 * 150.00094 * 6 5 3 12 12 C 1.50705 * 109.47374 * 184.99686 * 3 2 1 13 13 O 1.21279 * 119.99689 * 245.00385 * 12 3 2 14 14 N 1.34767 * 119.99749 * 64.99723 * 12 3 2 15 15 C 1.46505 * 120.00314 * 180.02562 * 14 12 3 16 16 C 1.53002 * 110.77548 * 61.78235 * 15 14 12 17 17 C 1.55153 * 110.72295 * 185.02568 * 15 14 12 18 18 C 1.55131 * 101.48647 * 82.69337 * 17 15 14 19 19 N 1.47426 * 104.71847 * 37.29562 * 18 17 15 20 20 C 1.36945 * 125.64675 * 155.81671 * 19 18 17 21 21 H 1.07997 * 119.99756 * 179.68946 * 20 19 18 22 22 C 1.38805 * 119.99878 * 359.68852 * 20 19 18 23 23 N 1.31624 * 120.00257 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99929 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47174 * 270.00277 * 24 22 20 26 26 H 1.48501 * 109.47062 * 30.00228 * 24 22 20 27 27 H 1.48499 * 109.46981 * 150.00382 * 24 22 20 28 28 C 1.47026 * 108.70569 * 335.55014 * 19 18 17 29 29 H 1.08996 * 109.47567 * 300.00050 * 1 2 3 30 30 H 1.09007 * 109.46853 * 60.00229 * 1 2 3 31 31 H 1.09005 * 109.47557 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47266 * 239.99585 * 2 1 3 33 33 H 1.09002 * 109.46428 * 119.99584 * 2 1 3 34 34 H 1.08996 * 109.47116 * 29.99655 * 6 5 3 35 35 H 1.08996 * 109.47158 * 299.99917 * 7 6 5 36 36 H 1.09000 * 109.47028 * 59.99746 * 7 6 5 37 37 H 1.08996 * 109.47230 * 300.00058 * 8 7 6 38 38 H 1.08998 * 109.46675 * 179.97438 * 8 7 6 39 39 H 1.08995 * 109.47352 * 179.97438 * 9 8 7 40 40 H 1.09009 * 109.47425 * 60.00043 * 9 8 7 41 41 H 1.08996 * 109.46947 * 300.00002 * 10 9 8 42 42 H 1.09000 * 109.47157 * 180.02562 * 10 9 8 43 43 H 1.09003 * 109.47171 * 299.99379 * 11 6 5 44 44 H 1.08996 * 109.47433 * 59.99755 * 11 6 5 45 45 H 0.97003 * 120.00088 * 0.02562 * 14 12 3 46 46 H 1.08994 * 109.47385 * 298.21602 * 16 15 14 47 47 H 1.09001 * 109.47019 * 58.22436 * 16 15 14 48 48 H 1.09001 * 109.46551 * 178.21577 * 16 15 14 49 49 H 1.08999 * 111.00098 * 200.93711 * 17 15 14 50 50 H 1.08999 * 111.00620 * 324.74889 * 17 15 14 51 51 H 1.08994 * 110.50226 * 278.45550 * 18 17 15 52 52 H 1.09001 * 110.34274 * 156.05220 * 18 17 15 53 53 H 0.97001 * 119.99885 * 179.97438 * 23 22 20 54 54 H 1.09003 * 109.87851 * 120.70448 * 28 19 18 55 55 H 1.08997 * 109.88162 * 241.71678 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 8 1.6619 2.0814 1.2210 6 6 0.3926 2.7356 1.1659 7 6 0.5846 4.1836 0.7105 8 6 -0.7745 4.8839 0.6509 9 6 -1.4183 4.8669 2.0387 10 6 -1.6102 3.4189 2.4942 11 6 -0.2506 2.7187 2.5540 12 6 3.5419 1.4443 -0.1238 13 8 4.2249 1.8611 0.7877 14 7 4.1260 0.9828 -1.2472 15 6 5.5861 0.9840 -1.3674 16 6 6.2197 0.0948 -0.2955 17 6 6.0206 0.5288 -2.7856 18 6 5.8815 1.8482 -3.5896 19 7 6.3226 2.9026 -2.6584 20 6 6.8154 4.1290 -3.0170 21 1 7.1079 4.8369 -2.2557 22 6 6.9389 4.4620 -4.3588 23 7 6.5818 3.5994 -5.2866 24 14 7.6104 6.1352 -4.8478 25 1 6.4902 7.1027 -4.9667 26 1 8.5646 6.6074 -3.8126 27 1 8.3103 6.0254 -6.1530 28 6 6.1397 2.4219 -1.2810 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 -0.2540 2.2152 0.4594 35 1 1.2312 4.7040 1.4170 36 1 1.0429 4.1957 -0.2784 37 1 -1.4207 4.3634 -0.0559 38 1 -0.6376 5.9156 0.3268 39 1 -2.3862 5.3662 1.9964 40 1 -0.7720 5.3875 2.7455 41 1 -2.2564 2.8984 1.7875 42 1 -2.0692 3.4068 3.4827 43 1 -0.3874 1.6871 2.8785 44 1 0.3960 3.2391 3.2605 45 1 3.5797 0.6497 -1.9762 46 1 5.9742 0.4851 0.6921 47 1 5.8343 -0.9203 -0.3912 48 1 7.3020 0.0861 -0.4240 49 1 7.0517 0.1753 -2.7836 50 1 5.3482 -0.2364 -3.1734 51 1 4.8439 2.0097 -3.8816 52 1 6.5249 1.8255 -4.4692 53 1 6.6678 3.8323 -6.2243 54 1 7.0966 2.4200 -0.7590 55 1 5.4321 3.0632 -0.7555 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278398280.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:06:04 Heat of formation + Delta-G solvation = -97.064156 kcal Electronic energy + Delta-G solvation = -31723.587352 eV Core-core repulsion = 27759.560649 eV Total energy + Delta-G solvation = -3964.026703 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 3.23 seconds Orbital eigenvalues (eV) -41.55085 -40.32931 -38.89393 -37.48801 -35.76613 -34.43107 -33.37209 -31.82160 -31.65979 -30.81426 -30.35386 -27.98190 -27.55585 -25.40029 -23.61047 -23.30290 -23.14750 -22.28281 -21.81475 -20.79921 -20.40007 -19.06425 -18.28837 -18.05476 -17.10754 -16.70665 -16.61372 -16.21774 -15.74192 -15.53924 -15.45520 -15.09129 -14.93155 -14.83227 -14.64937 -14.28470 -14.06493 -13.95564 -13.64536 -13.56524 -13.33155 -13.27605 -13.16169 -13.10119 -12.99764 -12.83126 -12.77927 -12.63537 -12.17590 -12.11664 -12.05276 -12.03561 -11.97156 -11.75067 -11.68690 -11.55079 -11.50157 -11.44122 -11.07355 -10.77209 -10.63599 -10.23377 -10.02987 -8.90325 -7.80560 -5.24263 1.43317 1.44650 1.53966 1.62729 1.87235 2.46427 2.86681 3.28152 3.53626 3.68118 3.70543 3.73566 3.78612 3.83684 3.96758 4.01289 4.03568 4.17046 4.22771 4.26166 4.31238 4.38067 4.51295 4.53267 4.54987 4.61632 4.63271 4.66635 4.79125 4.81567 4.85088 4.90052 4.91350 4.99044 5.00556 5.07488 5.08391 5.09273 5.15469 5.20584 5.21963 5.27521 5.31815 5.34380 5.39625 5.40470 5.49352 5.60203 5.67550 5.79288 6.19339 6.29863 6.63381 7.09699 7.30614 7.75151 8.38753 9.20407 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011463 B = 0.003242 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2442.023705 B = 8635.614813 C =10179.979838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.133 4.133 3 C 0.078 3.922 4 H 0.091 0.909 5 O -0.376 6.376 6 C 0.079 3.921 7 C -0.147 4.147 8 C -0.113 4.113 9 C -0.122 4.122 10 C -0.110 4.110 11 C -0.113 4.113 12 C 0.510 3.490 13 O -0.562 6.562 14 N -0.699 5.699 15 C 0.171 3.829 16 C -0.139 4.139 17 C -0.126 4.126 18 C 0.155 3.845 19 N -0.623 5.623 20 C -0.245 4.245 21 H 0.066 0.934 22 C -0.058 4.058 23 N -0.942 5.942 24 Si 0.977 3.023 25 H -0.287 1.287 26 H -0.275 1.275 27 H -0.285 1.285 28 C 0.136 3.864 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.047 0.953 36 H 0.045 0.955 37 H 0.076 0.924 38 H 0.062 0.938 39 H 0.080 0.920 40 H 0.053 0.947 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.076 0.924 44 H 0.053 0.947 45 H 0.411 0.589 46 H 0.051 0.949 47 H 0.082 0.918 48 H 0.069 0.931 49 H 0.084 0.916 50 H 0.105 0.895 51 H -0.006 1.006 52 H 0.078 0.922 53 H 0.249 0.751 54 H 0.018 0.982 55 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.347 -9.551 10.682 24.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.171 4.171 3 C 0.016 3.984 4 H 0.109 0.891 5 O -0.294 6.294 6 C 0.022 3.978 7 C -0.185 4.185 8 C -0.150 4.150 9 C -0.160 4.160 10 C -0.147 4.147 11 C -0.151 4.151 12 C 0.296 3.704 13 O -0.440 6.440 14 N -0.352 5.352 15 C 0.084 3.916 16 C -0.198 4.198 17 C -0.164 4.164 18 C 0.030 3.970 19 N -0.349 5.349 20 C -0.374 4.374 21 H 0.084 0.916 22 C -0.251 4.251 23 N -0.591 5.591 24 Si 0.805 3.195 25 H -0.214 1.214 26 H -0.200 1.200 27 H -0.211 1.211 28 C 0.010 3.990 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.112 0.888 33 H 0.087 0.913 34 H 0.108 0.892 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.095 0.905 38 H 0.081 0.919 39 H 0.099 0.901 40 H 0.072 0.928 41 H 0.096 0.904 42 H 0.099 0.901 43 H 0.094 0.906 44 H 0.071 0.929 45 H 0.247 0.753 46 H 0.070 0.930 47 H 0.100 0.900 48 H 0.088 0.912 49 H 0.102 0.898 50 H 0.123 0.877 51 H 0.012 0.988 52 H 0.096 0.904 53 H 0.059 0.941 54 H 0.036 0.964 55 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges -18.687 -9.129 11.338 23.688 hybrid contribution 0.539 1.406 -0.850 1.729 sum -18.148 -7.723 10.489 22.339 Atomic orbital electron populations 1.21955 0.93342 1.03550 1.02493 1.21983 0.98341 0.92776 1.03964 1.22024 0.90237 0.96748 0.89348 0.89086 1.88041 1.37994 1.70998 1.32395 1.22599 0.84214 0.91535 0.99423 1.22099 0.98769 0.97195 1.00440 1.21486 0.94714 1.00408 0.98438 1.21591 1.01153 0.97283 0.95933 1.21507 0.95277 0.95144 1.02782 1.21596 0.96862 1.01838 0.94758 1.20945 0.90867 0.76578 0.82005 1.90660 1.65981 1.46638 1.40723 1.45817 1.06783 1.64477 1.18159 1.21148 0.79678 0.93750 0.96979 1.21944 1.00754 0.99231 0.97836 1.23248 1.02627 0.98185 0.92382 1.21823 0.96417 0.84841 0.93882 1.44796 1.74495 1.14458 1.01159 1.19351 1.34673 0.91506 0.91838 0.91592 1.25524 1.02270 1.02012 0.95333 1.69998 1.54511 1.35190 0.99428 0.85103 0.77835 0.79171 0.77357 1.21448 1.20044 1.21126 1.21656 0.96386 0.94312 0.86629 0.92016 0.91573 0.90427 0.88759 0.91345 0.89176 0.93461 0.93651 0.90539 0.91882 0.90114 0.92791 0.90382 0.90081 0.90571 0.92863 0.75251 0.93006 0.89954 0.91234 0.89758 0.87703 0.98817 0.90449 0.94083 0.96412 0.97823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 8.58 71.98 0.62 -1.42 16 2 C -0.13 -2.38 5.61 30.59 0.17 -2.21 16 3 C 0.08 2.00 2.64 29.85 0.08 2.08 16 4 H 0.09 2.15 7.62 -2.39 -0.02 2.13 16 5 O -0.38 -10.88 9.10 -129.99 -1.18 -12.06 16 6 C 0.08 1.71 1.37 30.60 0.04 1.75 16 7 C -0.15 -3.53 5.53 30.60 0.17 -3.36 16 8 C -0.11 -1.96 5.92 30.59 0.18 -1.78 16 9 C -0.12 -1.75 5.92 30.59 0.18 -1.57 16 10 C -0.11 -1.40 5.92 30.61 0.18 -1.22 16 11 C -0.11 -2.04 5.45 30.61 0.17 -1.88 16 12 C 0.51 17.28 6.41 87.66 0.56 17.84 16 13 O -0.56 -24.30 13.47 15.96 0.21 -24.09 16 14 N -0.70 -21.63 5.04 -417.57 -2.11 -23.74 16 15 C 0.17 6.09 0.80 4.79 0.00 6.09 16 16 C -0.14 -4.29 8.41 71.98 0.61 -3.69 16 17 C -0.13 -4.33 6.10 32.06 0.20 -4.14 16 18 C 0.15 7.42 5.88 86.93 0.51 7.93 16 19 N -0.62 -33.72 3.39 -691.55 -2.35 -36.07 16 20 C -0.24 -14.53 10.27 84.03 0.86 -13.67 16 21 H 0.07 3.92 7.83 -2.91 -0.02 3.89 16 22 C -0.06 -3.38 5.49 84.86 0.47 -2.92 16 23 N -0.94 -55.61 10.08 21.65 0.22 -55.39 16 24 Si 0.98 46.85 29.55 68.60 2.03 48.87 16 25 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 26 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 27 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 28 C 0.14 6.49 6.13 86.73 0.53 7.02 16 29 H 0.06 0.85 5.54 -2.39 -0.01 0.84 16 30 H 0.07 0.75 8.01 -2.38 -0.02 0.73 16 31 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.09 1.35 7.77 -2.39 -0.02 1.33 16 33 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.09 1.55 5.23 -2.39 -0.01 1.53 16 35 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.04 1.22 7.97 -2.39 -0.02 1.20 16 37 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.08 0.89 8.14 -2.39 -0.02 0.88 16 40 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 41 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.08 1.25 7.88 -2.39 -0.02 1.23 16 44 H 0.05 1.15 8.14 -2.39 -0.02 1.14 16 45 H 0.41 10.12 8.18 -92.71 -0.76 9.36 16 46 H 0.05 1.82 6.46 -2.39 -0.02 1.81 16 47 H 0.08 2.02 8.14 -2.39 -0.02 2.01 16 48 H 0.07 2.06 8.13 -2.39 -0.02 2.04 16 49 H 0.08 2.83 8.04 -2.39 -0.02 2.81 16 50 H 0.10 2.76 8.04 -2.39 -0.02 2.74 16 51 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 52 H 0.08 4.22 5.86 -2.39 -0.01 4.20 16 53 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 54 H 0.02 0.88 7.82 -2.39 -0.02 0.86 16 55 H 0.00 0.20 6.48 -2.39 -0.02 0.19 16 Total: -1.00 -75.63 411.27 2.45 -73.18 By element: Atomic # 1 Polarization: 24.32 SS G_CDS: 0.10 Total: 24.41 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: 5.53 Total: 4.87 kcal Atomic # 7 Polarization: -110.96 SS G_CDS: -4.23 Total: -115.19 kcal Atomic # 8 Polarization: -35.18 SS G_CDS: -0.97 Total: -36.15 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.87 kcal Total: -75.63 2.45 -73.18 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278398280.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.883 kcal (2) G-P(sol) polarization free energy of solvation -75.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.23 seconds