Wall clock time and date at job start Wed Apr 1 2020 00:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47225 * 2 1 4 4 H 1.08997 * 109.47251 * 54.24323 * 3 2 1 5 5 O 1.42907 * 109.46595 * 294.24857 * 3 2 1 6 6 C 1.42901 * 113.99596 * 153.94114 * 5 3 2 7 7 C 1.54262 * 110.03078 * 272.05495 * 6 5 3 8 8 C 1.54966 * 104.15985 * 217.13868 * 7 6 5 9 9 C 1.54886 * 102.77673 * 37.88873 * 8 7 6 10 10 C 1.53877 * 110.03159 * 154.83975 * 6 5 3 11 11 C 1.50696 * 109.47139 * 174.24812 * 3 2 1 12 12 O 1.21281 * 119.99988 * 103.89404 * 11 3 2 13 13 N 1.34777 * 119.99961 * 283.89119 * 11 3 2 14 14 C 1.46917 * 120.63175 * 5.70608 * 13 11 3 15 15 C 1.53195 * 108.77814 * 126.37074 * 14 13 11 16 16 C 1.53031 * 109.31273 * 54.63095 * 15 14 13 17 17 C 1.53044 * 109.54235 * 298.64084 * 16 15 14 18 18 C 1.46931 * 120.62722 * 185.42709 * 13 11 3 19 19 H 1.09002 * 109.58036 * 113.84553 * 18 13 11 20 20 C 1.52992 * 109.58988 * 353.41896 * 18 13 11 21 21 N 1.46506 * 109.47314 * 69.20817 * 20 18 13 22 22 C 1.36935 * 120.00155 * 182.06734 * 21 20 18 23 23 H 1.07999 * 119.99785 * 0.02562 * 22 21 20 24 24 C 1.38810 * 119.99915 * 180.02562 * 22 21 20 25 25 N 1.31613 * 120.00041 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00050 * 180.02562 * 24 22 21 27 27 H 1.48509 * 109.47154 * 59.99710 * 26 24 22 28 28 H 1.48498 * 109.47290 * 179.97438 * 26 24 22 29 29 H 1.48498 * 109.47006 * 299.99860 * 26 24 22 30 30 H 1.09000 * 109.47137 * 175.28551 * 1 2 3 31 31 H 1.09004 * 109.47636 * 295.28718 * 1 2 3 32 32 H 1.09000 * 109.46886 * 55.28788 * 1 2 3 33 33 H 1.09007 * 109.46677 * 119.99601 * 2 1 3 34 34 H 1.08999 * 109.47306 * 239.99633 * 2 1 3 35 35 H 1.09004 * 110.01849 * 33.44950 * 6 5 3 36 36 H 1.09000 * 110.49189 * 335.78754 * 7 6 5 37 37 H 1.09001 * 110.48914 * 98.43259 * 7 6 5 38 38 H 1.09003 * 110.71940 * 279.57021 * 8 7 6 39 39 H 1.09003 * 110.92448 * 156.29831 * 8 7 6 40 40 H 1.09000 * 110.48361 * 203.40229 * 9 8 7 41 41 H 1.08999 * 110.59738 * 80.81815 * 9 8 7 42 42 H 1.09004 * 110.02889 * 238.56803 * 10 6 5 43 43 H 1.08999 * 110.02737 * 359.97438 * 10 6 5 44 44 H 1.09007 * 109.59107 * 246.16041 * 14 13 11 45 45 H 1.09007 * 109.59156 * 6.44059 * 14 13 11 46 46 H 1.08993 * 109.49976 * 174.58823 * 15 14 13 47 47 H 1.09005 * 109.49541 * 294.64928 * 15 14 13 48 48 H 1.09005 * 109.46009 * 58.66053 * 16 15 14 49 49 H 1.09002 * 109.46133 * 178.62894 * 16 15 14 50 50 H 1.08994 * 109.49601 * 181.31489 * 17 16 15 51 51 H 1.08997 * 109.49231 * 301.38052 * 17 16 15 52 52 H 1.08992 * 109.47480 * 189.21547 * 20 18 13 53 53 H 1.09008 * 109.47118 * 309.21486 * 20 18 13 54 54 H 0.96999 * 119.99523 * 2.07986 * 21 20 18 55 55 H 0.97002 * 119.99920 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5950 1.9852 0.8339 5 8 1.6771 2.0760 -1.2285 6 6 1.5564 3.4969 -1.1362 7 6 0.1237 3.8790 -0.7106 8 6 -0.1798 5.1678 -1.5157 9 6 0.4934 4.8851 -2.8816 10 6 1.7916 4.1366 -2.5158 11 6 3.5402 1.4449 0.1424 12 8 4.2407 1.6638 -0.8232 13 7 4.1036 1.2037 1.3428 14 6 3.2767 0.8146 2.4931 15 6 3.8336 -0.4845 3.0838 16 6 5.3168 -0.2969 3.4107 17 6 6.0878 0.0197 2.1271 18 6 5.5571 1.3191 1.5243 19 1 5.7765 2.1475 2.1978 20 6 6.2253 1.5644 0.1700 21 7 5.8775 2.9040 -0.3106 22 6 6.3291 3.3324 -1.5303 23 1 6.9413 2.6826 -2.1381 24 6 6.0001 4.6018 -1.9854 25 7 5.2545 5.3938 -1.2444 26 14 6.6155 5.1860 -3.6496 27 1 6.1063 4.2811 -4.7113 28 1 6.1286 6.5662 -3.9008 29 1 8.1004 5.1750 -3.6599 30 1 -0.3633 -1.0242 -0.0845 31 1 -0.3634 0.4390 0.9292 32 1 -0.3633 0.5852 -0.8448 33 1 1.8933 -0.5138 0.8901 34 1 1.8934 -0.5139 -0.8899 35 1 2.2763 3.8865 -0.4163 36 1 -0.5774 3.0884 -0.9780 37 1 0.0843 4.0790 0.3602 38 1 0.2699 6.0371 -1.0359 39 1 -1.2541 5.3077 -1.6360 40 1 0.7230 5.8192 -3.3943 41 1 -0.1468 4.2578 -3.5020 42 1 2.6251 4.8373 -2.4652 43 1 1.9983 3.3631 -3.2555 44 1 3.3064 1.6011 3.2473 45 1 2.2480 0.6590 2.1679 46 1 3.2890 -0.7330 3.9946 47 1 3.7194 -1.2916 2.3601 48 1 5.4320 0.5263 4.1158 49 1 5.7097 -1.2121 3.8537 50 1 7.1475 0.1301 2.3571 51 1 5.9533 -0.7922 1.4124 52 1 7.3069 1.4869 0.2792 53 1 5.8782 0.8199 -0.5466 54 1 5.3276 3.4874 0.2353 55 1 5.0249 6.2810 -1.5623 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281887480.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:00:20 Heat of formation + Delta-G solvation = -66.590980 kcal Electronic energy + Delta-G solvation = -33404.146689 eV Core-core repulsion = 29441.441401 eV Total energy + Delta-G solvation = -3962.705287 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.67034 -39.88428 -38.11567 -37.26475 -36.10054 -34.56798 -33.57143 -33.28139 -31.47795 -29.63902 -28.98334 -28.03313 -27.22192 -25.68288 -24.28889 -23.17957 -22.57954 -21.76982 -21.46428 -21.25102 -20.00096 -18.99948 -18.18794 -17.79465 -16.85071 -16.69262 -16.63690 -16.02412 -15.65335 -15.59378 -15.29085 -15.21275 -15.11673 -14.94728 -14.64321 -14.45843 -14.25908 -13.94374 -13.64698 -13.55918 -13.36862 -13.19617 -13.07831 -12.82932 -12.76369 -12.69944 -12.55168 -12.20427 -12.08952 -12.02383 -12.00369 -11.90545 -11.83221 -11.78546 -11.68732 -11.51444 -11.44396 -11.40695 -11.30600 -10.87981 -10.76983 -9.48534 -9.39697 -8.57365 -7.80220 -4.98011 1.38425 1.42480 1.47135 2.00059 2.13376 2.60751 2.76322 3.52040 3.58676 3.66298 3.71199 3.85382 3.90890 3.94601 4.00613 4.01858 4.13791 4.15802 4.30495 4.34806 4.39197 4.42960 4.50410 4.53115 4.57290 4.62764 4.65146 4.70923 4.74752 4.79819 4.88082 4.90430 4.95512 5.01570 5.04079 5.05832 5.07985 5.11216 5.15076 5.17942 5.18240 5.25757 5.26469 5.33876 5.35705 5.45597 5.48685 5.52317 5.55156 5.88376 6.28710 6.39279 6.73842 7.46307 7.67281 8.23168 8.48418 9.42822 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.008193 B = 0.006370 C = 0.003938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3416.715794 B = 4394.560076 C = 7108.536532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.109 4.109 3 C 0.083 3.917 4 H 0.086 0.914 5 O -0.366 6.366 6 C 0.100 3.900 7 C -0.133 4.133 8 C -0.114 4.114 9 C -0.114 4.114 10 C -0.118 4.118 11 C 0.443 3.557 12 O -0.491 6.491 13 N -0.613 5.613 14 C 0.096 3.904 15 C -0.127 4.127 16 C -0.112 4.112 17 C -0.119 4.119 18 C 0.148 3.852 19 H 0.057 0.943 20 C 0.164 3.836 21 N -0.699 5.699 22 C -0.203 4.203 23 H 0.050 0.950 24 C -0.069 4.069 25 N -0.958 5.958 26 Si 0.950 3.050 27 H -0.295 1.295 28 H -0.292 1.292 29 H -0.281 1.281 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.049 0.951 33 H 0.102 0.898 34 H 0.051 0.949 35 H 0.026 0.974 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.060 0.940 39 H 0.097 0.903 40 H 0.065 0.935 41 H 0.079 0.921 42 H 0.039 0.961 43 H 0.046 0.954 44 H 0.070 0.930 45 H 0.099 0.901 46 H 0.104 0.896 47 H 0.064 0.936 48 H 0.067 0.933 49 H 0.084 0.916 50 H 0.077 0.923 51 H 0.058 0.942 52 H 0.004 0.996 53 H 0.021 0.979 54 H 0.365 0.635 55 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.956 -11.929 12.398 22.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.147 4.147 3 C 0.022 3.978 4 H 0.104 0.896 5 O -0.284 6.284 6 C 0.042 3.958 7 C -0.171 4.171 8 C -0.152 4.152 9 C -0.152 4.152 10 C -0.156 4.156 11 C 0.229 3.771 12 O -0.362 6.362 13 N -0.352 5.352 14 C -0.026 4.026 15 C -0.165 4.165 16 C -0.149 4.149 17 C -0.158 4.158 18 C 0.044 3.956 19 H 0.075 0.925 20 C 0.037 3.963 21 N -0.339 5.339 22 C -0.336 4.336 23 H 0.068 0.932 24 C -0.261 4.261 25 N -0.611 5.611 26 Si 0.781 3.219 27 H -0.223 1.223 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.068 0.932 33 H 0.120 0.880 34 H 0.070 0.930 35 H 0.044 0.956 36 H 0.108 0.892 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.116 0.884 40 H 0.083 0.917 41 H 0.098 0.902 42 H 0.058 0.942 43 H 0.065 0.935 44 H 0.088 0.912 45 H 0.117 0.883 46 H 0.122 0.878 47 H 0.083 0.917 48 H 0.086 0.914 49 H 0.103 0.897 50 H 0.096 0.904 51 H 0.077 0.923 52 H 0.022 0.978 53 H 0.039 0.961 54 H 0.197 0.803 55 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -13.507 -11.919 11.483 21.363 hybrid contribution 1.049 1.148 -1.105 1.907 sum -12.458 -10.772 10.378 19.466 Atomic orbital electron populations 1.21698 0.92673 1.02831 1.02633 1.21635 0.98522 0.91302 1.03216 1.22199 0.90026 0.97183 0.88440 0.89592 1.87963 1.88295 1.19750 1.32397 1.22608 0.96311 0.80197 0.96659 1.22870 0.94929 0.98827 1.00451 1.22415 1.01526 0.96790 0.94450 1.22310 0.94852 0.99678 0.98345 1.22037 0.98644 0.98581 0.96313 1.21966 0.92223 0.79047 0.83884 1.91101 1.62207 1.43560 1.39313 1.48074 1.06675 1.70437 1.10064 1.22085 0.95230 0.97688 0.87584 1.21908 0.96311 0.96256 1.02026 1.21486 0.95077 1.02671 0.95712 1.21777 1.00477 0.95334 0.98235 1.21208 0.80408 0.98190 0.95809 0.92505 1.20899 0.94109 0.88138 0.93116 1.42172 1.60653 1.12393 1.18713 1.19216 1.22392 0.96464 0.95554 0.93231 1.25095 1.02464 0.97575 1.00959 1.69761 1.44195 1.08585 1.38540 0.85546 0.77914 0.76688 0.81709 1.22288 1.21795 1.20811 0.90776 0.90906 0.93231 0.87998 0.92969 0.95598 0.89211 0.90548 0.92143 0.88408 0.91669 0.90217 0.94217 0.93504 0.91159 0.88308 0.87755 0.91717 0.91396 0.89715 0.90410 0.92343 0.97823 0.96109 0.80341 0.94880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.86 71.98 0.71 -1.80 16 2 C -0.11 -2.58 5.19 30.60 0.16 -2.42 16 3 C 0.08 2.64 1.49 29.85 0.04 2.68 16 4 H 0.09 2.36 7.01 -2.39 -0.02 2.35 16 5 O -0.37 -14.13 8.64 -130.46 -1.13 -15.26 16 6 C 0.10 3.86 3.14 31.32 0.10 3.96 16 7 C -0.13 -3.61 6.46 31.69 0.20 -3.41 16 8 C -0.11 -2.92 6.91 31.91 0.22 -2.70 16 9 C -0.11 -3.49 6.83 31.67 0.22 -3.27 16 10 C -0.12 -4.95 6.61 31.32 0.21 -4.74 16 11 C 0.44 17.53 6.28 87.66 0.55 18.08 16 12 O -0.49 -25.63 10.11 15.49 0.16 -25.48 16 13 N -0.61 -19.52 2.98 -795.83 -2.37 -21.89 16 14 C 0.10 1.94 5.61 86.37 0.48 2.42 16 15 C -0.13 -1.90 6.08 30.67 0.19 -1.71 16 16 C -0.11 -1.90 5.88 30.62 0.18 -1.72 16 17 C -0.12 -2.97 5.33 30.53 0.16 -2.81 16 18 C 0.15 5.09 2.90 44.83 0.13 5.22 16 19 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 20 C 0.16 7.60 4.86 86.38 0.42 8.02 16 21 N -0.70 -39.42 3.26 -343.46 -1.12 -40.54 16 22 C -0.20 -12.73 9.33 84.03 0.78 -11.95 16 23 H 0.05 3.14 7.83 -2.91 -0.02 3.12 16 24 C -0.07 -4.33 5.50 84.86 0.47 -3.87 16 25 N -0.96 -61.42 13.06 21.65 0.28 -61.14 16 26 Si 0.95 51.23 29.55 68.60 2.03 53.25 16 27 H -0.30 -16.02 7.11 99.48 0.71 -15.32 16 28 H -0.29 -15.49 7.11 99.48 0.71 -14.78 16 29 H -0.28 -14.59 7.11 99.48 0.71 -13.89 16 30 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 32 H 0.05 1.05 7.73 -2.39 -0.02 1.03 16 33 H 0.10 1.88 6.10 -2.38 -0.01 1.86 16 34 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.03 1.21 7.76 -2.39 -0.02 1.19 16 36 H 0.09 2.14 8.08 -2.39 -0.02 2.13 16 37 H 0.08 1.83 8.14 -2.39 -0.02 1.82 16 38 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.06 1.93 8.14 -2.39 -0.02 1.92 16 41 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.04 2.00 8.14 -2.38 -0.02 1.98 16 43 H 0.05 2.12 7.95 -2.39 -0.02 2.10 16 44 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 45 H 0.10 1.65 4.42 -2.38 -0.01 1.64 16 46 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 47 H 0.06 1.02 8.14 -2.38 -0.02 1.01 16 48 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 49 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 50 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 51 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 52 H 0.00 0.19 8.12 -2.39 -0.02 0.17 16 53 H 0.02 1.08 6.34 -2.38 -0.02 1.07 16 54 H 0.37 21.86 7.37 -92.71 -0.68 21.18 16 55 H 0.24 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -80.43 412.64 3.24 -77.19 By element: Atomic # 1 Polarization: 33.72 SS G_CDS: 0.16 Total: 33.88 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: 5.23 Total: -0.02 kcal Atomic # 7 Polarization: -120.36 SS G_CDS: -3.21 Total: -123.57 kcal Atomic # 8 Polarization: -39.76 SS G_CDS: -0.97 Total: -40.73 kcal Atomic # 14 Polarization: 51.23 SS G_CDS: 2.03 Total: 53.25 kcal Total: -80.43 3.24 -77.19 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281887480.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.601 kcal (2) G-P(sol) polarization free energy of solvation -80.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds