Wall clock time and date at job start Tue Mar 31 2020 22:17:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52992 * 1
3 3 C 1.52996 * 109.47153 * 2 1
4 4 H 1.08996 * 109.47452 * 54.99933 * 3 2 1
5 5 C 1.53002 * 109.46972 * 294.99473 * 3 2 1
6 6 C 1.52996 * 109.46972 * 179.97438 * 5 3 2
7 7 C 1.52997 * 109.47131 * 60.00459 * 6 5 3
8 8 C 1.52999 * 109.46991 * 299.99311 * 7 6 5
9 9 C 1.52997 * 109.47131 * 174.99932 * 3 2 1
10 10 H 1.09001 * 109.47502 * 60.00153 * 9 3 2
11 11 O 1.42906 * 109.47321 * 299.99664 * 9 3 2
12 12 C 1.42899 * 114.00172 * 149.99974 * 11 9 3
13 13 C 1.50696 * 109.46760 * 180.02562 * 12 11 9
14 14 O 1.21277 * 120.00591 * 0.02562 * 13 12 11
15 15 N 1.34777 * 119.99717 * 179.97438 * 13 12 11
16 16 C 1.46499 * 120.00037 * 180.02562 * 15 13 12
17 17 C 1.53005 * 109.47129 * 180.02562 * 16 15 13
18 18 H 1.08998 * 112.84982 * 316.19481 * 17 16 15
19 19 C 1.53781 * 113.61424 * 87.50176 * 17 16 15
20 20 C 1.53780 * 87.07966 * 139.98150 * 19 17 16
21 21 H 1.09003 * 113.61447 * 220.01571 * 20 19 17
22 22 N 1.46498 * 113.69131 * 89.12935 * 20 19 17
23 23 C 1.36935 * 120.00511 * 107.46376 * 22 20 19
24 24 H 1.08003 * 119.99592 * 359.97438 * 23 22 20
25 25 C 1.38811 * 120.00439 * 179.97438 * 23 22 20
26 26 N 1.31617 * 120.00125 * 179.97438 * 25 23 22
27 27 Si 1.86799 * 119.99741 * 0.02562 * 25 23 22
28 28 H 1.48497 * 109.47383 * 89.99654 * 27 25 23
29 29 H 1.48502 * 109.46910 * 209.99779 * 27 25 23
30 30 H 1.48503 * 109.47165 * 329.99557 * 27 25 23
31 31 C 1.53779 * 87.08499 * 334.56666 * 20 19 17
32 32 H 1.08997 * 109.47659 * 299.99976 * 1 2 3
33 33 H 1.09007 * 109.47202 * 60.00401 * 1 2 3
34 34 H 1.09002 * 109.47186 * 180.02562 * 1 2 3
35 35 H 1.09000 * 109.47417 * 239.99564 * 2 1 3
36 36 H 1.09007 * 109.47202 * 119.99599 * 2 1 3
37 37 H 1.08996 * 109.47407 * 300.00487 * 5 3 2
38 38 H 1.09000 * 109.46986 * 60.00258 * 5 3 2
39 39 H 1.09001 * 109.46993 * 180.02562 * 6 5 3
40 40 H 1.09000 * 109.47380 * 299.99696 * 6 5 3
41 41 H 1.09002 * 109.47153 * 179.97438 * 7 6 5
42 42 H 1.08993 * 109.47194 * 60.00154 * 7 6 5
43 43 H 1.08993 * 109.47839 * 300.00447 * 8 7 6
44 44 H 1.09000 * 109.47160 * 180.02562 * 8 7 6
45 45 H 1.08994 * 109.46897 * 300.00216 * 12 11 9
46 46 H 1.09001 * 109.46938 * 60.00344 * 12 11 9
47 47 H 0.96999 * 120.00036 * 0.02562 * 15 13 12
48 48 H 1.08994 * 109.47176 * 299.99702 * 16 15 13
49 49 H 1.09001 * 109.47210 * 60.00168 * 16 15 13
50 50 H 1.09004 * 113.61103 * 254.52622 * 19 17 16
51 51 H 1.08994 * 113.61550 * 25.43178 * 19 17 16
52 52 H 0.97002 * 119.99821 * 287.46364 * 22 20 19
53 53 H 0.96998 * 120.00319 * 180.02562 * 26 25 23
54 54 H 1.08994 * 113.61501 * 270.88771 * 31 20 19
55 55 H 1.08994 * 113.61894 * 139.98113 * 31 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 1 1.6053 1.9815 0.8418
5 6 1.6352 2.1264 -1.3074
6 6 2.1447 3.5691 -1.3072
7 6 3.6695 3.5715 -1.1811
8 6 4.0742 2.8876 0.1263
9 6 3.5647 1.4443 0.1257
10 1 3.9994 0.9053 -0.7161
11 8 3.9428 0.8055 1.3469
12 6 5.2120 0.1512 1.2919
13 6 5.5074 -0.4849 2.6257
14 8 4.7095 -0.3880 3.5338
15 7 6.6580 -1.1624 2.8091
16 6 6.9449 -1.7813 4.1056
17 6 8.3040 -2.4817 4.0467
18 1 8.4462 -3.0532 3.1295
19 6 9.4868 -1.5612 4.3909
20 6 10.0856 -2.7497 5.1615
21 1 10.5558 -2.4670 6.1034
22 7 10.9339 -3.6166 4.3399
23 6 12.2930 -3.6016 4.5063
24 1 12.7396 -2.9503 5.2430
25 6 13.0967 -4.4234 3.7282
26 7 14.4031 -4.4086 3.8878
27 14 12.3243 -5.5494 2.4535
28 1 12.2264 -4.8343 1.1557
29 1 13.1663 -6.7615 2.2885
30 1 10.9661 -5.9476 2.9029
31 6 8.6471 -3.2689 5.3225
32 1 -0.3634 0.5138 0.8899
33 1 -0.3634 0.5138 -0.8901
34 1 -0.3634 -1.0277 0.0005
35 1 1.8933 -0.5139 -0.8899
36 1 1.8933 -0.5138 0.8901
37 1 2.0698 1.5874 -2.1492
38 1 0.5489 2.1252 -1.3970
39 1 1.8560 4.0565 -2.2384
40 1 1.7096 4.1079 -0.4655
41 1 4.0325 4.5993 -1.1814
42 1 4.1045 3.0328 -2.0229
43 1 3.6392 3.4263 0.9681
44 1 5.1604 2.8897 0.2164
45 1 5.1912 -0.6177 0.5196
46 1 5.9870 0.8809 1.0573
47 1 7.2961 -1.2402 2.0827
48 1 6.9659 -1.0129 4.8783
49 1 6.1696 -2.5109 4.3395
50 1 10.0748 -1.2628 3.5229
51 1 9.2144 -0.7201 5.0284
52 1 10.5328 -4.2013 3.6779
53 1 14.9648 -4.9826 3.3439
54 1 8.1452 -2.8946 6.2147
55 1 8.5571 -4.3489 5.2066
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001316628802.mol2 55
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:17:03
Heat of formation + Delta-G solvation = -100.482191 kcal
Electronic energy + Delta-G solvation = -29345.671830 eV
Core-core repulsion = 25381.496910 eV
Total energy + Delta-G solvation = -3964.174920 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 338.236 amu
Computer time = 2.16 seconds
Orbital eigenvalues (eV)
-41.09733 -40.43835 -39.80374 -37.42955 -36.05498 -34.97658 -34.84909 -32.70156
-31.21024 -30.21910 -29.44485 -27.53006 -26.45722 -25.28638 -24.80584 -23.24551
-23.00358 -21.80992 -21.55787 -20.83335 -20.12386 -19.55726 -18.27173 -17.97238
-17.07320 -16.88451 -16.67825 -16.21855 -16.09003 -15.79232 -15.61933 -15.38116
-15.06359 -14.90982 -14.69570 -14.64032 -14.29949 -14.21687 -14.04788 -13.82503
-13.58048 -13.36043 -13.14963 -13.08081 -13.00276 -12.66784 -12.55189 -12.36701
-12.24365 -12.07192 -11.97510 -11.89227 -11.67559 -11.65041 -11.51249 -11.42253
-11.27403 -11.10876 -11.02552 -10.90532 -10.71595 -10.36298 -10.08503 -9.29405
-8.02247 -5.36096 1.37869 1.41876 1.49393 1.56760 1.83182 2.48562
2.95656 3.28103 3.51326 3.60623 3.71201 3.74098 3.77089 3.90131
3.97230 4.01585 4.12325 4.19369 4.23222 4.27269 4.28872 4.30623
4.35760 4.37751 4.48998 4.50823 4.57521 4.70120 4.75773 4.76572
4.81937 4.90409 4.93262 4.97532 4.98546 5.08516 5.10264 5.15453
5.19616 5.25139 5.25711 5.30219 5.32240 5.34992 5.38432 5.47855
5.49570 5.54564 5.56198 5.81146 6.16798 6.22878 6.55285 7.08211
7.21607 7.84875 8.03867 9.19192
Molecular weight = 338.24amu
Principal moments of inertia in cm(-1)
A = 0.017272 B = 0.001779 C = 0.001745
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1620.758038 B =15735.448405 C =16043.549973
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C -0.118 4.118
3 C -0.080 4.080
4 H 0.060 0.940
5 C -0.108 4.108
6 C -0.123 4.123
7 C -0.114 4.114
8 C -0.142 4.142
9 C 0.091 3.909
10 H 0.077 0.923
11 O -0.383 6.383
12 C 0.045 3.955
13 C 0.508 3.492
14 O -0.575 6.575
15 N -0.715 5.715
16 C 0.140 3.860
17 C -0.103 4.103
18 H 0.094 0.906
19 C -0.154 4.154
20 C 0.144 3.856
21 H 0.056 0.944
22 N -0.733 5.733
23 C -0.233 4.233
24 H 0.055 0.945
25 C -0.066 4.066
26 N -0.984 5.984
27 Si 0.957 3.043
28 H -0.275 1.275
29 H -0.299 1.299
30 H -0.250 1.250
31 C -0.135 4.135
32 H 0.046 0.954
33 H 0.068 0.932
34 H 0.053 0.947
35 H 0.067 0.933
36 H 0.046 0.954
37 H 0.072 0.928
38 H 0.076 0.924
39 H 0.076 0.924
40 H 0.056 0.944
41 H 0.069 0.931
42 H 0.072 0.928
43 H 0.055 0.945
44 H 0.066 0.934
45 H 0.105 0.895
46 H 0.102 0.898
47 H 0.415 0.585
48 H 0.063 0.937
49 H 0.064 0.936
50 H 0.056 0.944
51 H 0.089 0.911
52 H 0.367 0.633
53 H 0.258 0.742
54 H 0.104 0.896
55 H 0.066 0.934
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -29.178 14.031 -14.474 35.464
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.155 4.155
3 C -0.099 4.099
4 H 0.078 0.922
5 C -0.146 4.146
6 C -0.160 4.160
7 C -0.151 4.151
8 C -0.180 4.180
9 C 0.034 3.966
10 H 0.095 0.905
11 O -0.302 6.302
12 C -0.035 4.035
13 C 0.295 3.705
14 O -0.455 6.455
15 N -0.368 5.368
16 C 0.016 3.984
17 C -0.122 4.122
18 H 0.112 0.888
19 C -0.194 4.194
20 C 0.035 3.965
21 H 0.074 0.926
22 N -0.374 5.374
23 C -0.364 4.364
24 H 0.073 0.927
25 C -0.257 4.257
26 N -0.635 5.635
27 Si 0.784 3.216
28 H -0.201 1.201
29 H -0.226 1.226
30 H -0.175 1.175
31 C -0.174 4.174
32 H 0.065 0.935
33 H 0.087 0.913
34 H 0.073 0.927
35 H 0.086 0.914
36 H 0.065 0.935
37 H 0.091 0.909
38 H 0.095 0.905
39 H 0.094 0.906
40 H 0.075 0.925
41 H 0.088 0.912
42 H 0.091 0.909
43 H 0.074 0.926
44 H 0.085 0.915
45 H 0.123 0.877
46 H 0.119 0.881
47 H 0.252 0.748
48 H 0.082 0.918
49 H 0.082 0.918
50 H 0.074 0.926
51 H 0.108 0.892
52 H 0.201 0.799
53 H 0.066 0.934
54 H 0.122 0.878
55 H 0.085 0.915
Dipole moment (debyes) X Y Z Total
from point charges -29.652 14.151 -13.558 35.543
hybrid contribution 0.852 -0.801 -0.743 1.385
sum -28.800 13.350 -14.301 34.817
Atomic orbital electron populations
1.21796 0.95219 1.01766 1.02008 1.21487 0.96460 0.95980 1.01592
1.21223 0.92988 0.96683 0.98975 0.92184 1.21605 1.01624 0.95486
0.95851 1.21587 0.95443 0.96670 1.02318 1.21487 0.96281 1.00881
0.96491 1.22054 1.01106 0.95784 0.99007 1.22380 0.95650 0.92694
0.85924 0.90486 1.88020 1.34823 1.71276 1.36114 1.22341 0.88426
0.98404 0.94286 1.20845 0.81161 0.78282 0.90189 1.90704 1.48468
1.60893 1.45387 1.45864 1.20580 1.54388 1.15981 1.21293 0.95865
0.96362 0.84832 1.22578 0.92527 0.97780 0.99301 0.88793 1.23700
0.96924 0.97773 1.01004 1.21344 0.90195 0.91496 0.93479 0.92594
1.42413 1.02449 1.48285 1.44303 1.19063 0.82828 1.18479 1.16033
0.92665 1.25538 0.95614 1.02037 1.02531 1.69889 1.04492 1.44224
1.44854 0.85385 0.78482 0.78293 0.79462 1.20068 1.22562 1.17496
1.23366 0.95885 1.00068 0.98072 0.93500 0.91292 0.92741 0.91394
0.93506 0.90922 0.90503 0.90559 0.92504 0.91185 0.90949 0.92602
0.91514 0.87719 0.88066 0.74816 0.91826 0.91815 0.92558 0.89250
0.79913 0.93359 0.87755 0.91477
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.89 9.67 71.98 0.70 -1.19 16
2 C -0.12 -1.72 5.33 30.59 0.16 -1.56 16
3 C -0.08 -1.11 1.93 -10.79 -0.02 -1.13 16
4 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16
5 C -0.11 -1.00 4.96 30.59 0.15 -0.85 16
6 C -0.12 -1.08 5.92 30.59 0.18 -0.90 16
7 C -0.11 -1.05 5.92 30.59 0.18 -0.87 16
8 C -0.14 -1.86 5.54 30.61 0.17 -1.69 16
9 C 0.09 1.31 2.05 30.61 0.06 1.38 16
10 H 0.08 0.85 7.79 -2.39 -0.02 0.84 16
11 O -0.38 -8.11 8.76 -129.94 -1.14 -9.25 16
12 C 0.04 0.73 6.23 71.23 0.44 1.17 16
13 C 0.51 11.98 7.91 87.66 0.69 12.68 16
14 O -0.58 -19.46 16.50 16.02 0.26 -19.20 16
15 N -0.71 -13.97 5.56 -463.07 -2.57 -16.54 16
16 C 0.14 3.11 5.51 86.38 0.48 3.59 16
17 C -0.10 -2.46 3.63 -10.26 -0.04 -2.50 16
18 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16
19 C -0.15 -4.38 7.43 31.12 0.23 -4.15 16
20 C 0.14 5.10 4.56 45.52 0.21 5.30 16
21 H 0.06 2.12 8.10 -2.39 -0.02 2.10 16
22 N -0.73 -32.51 5.12 -320.45 -1.64 -34.15 16
23 C -0.23 -13.00 10.45 84.03 0.88 -12.12 16
24 H 0.06 3.41 8.06 -2.91 -0.02 3.38 16
25 C -0.07 -3.81 5.50 84.86 0.47 -3.34 16
26 N -0.98 -62.40 13.97 21.65 0.30 -62.10 16
27 Si 0.96 44.00 27.74 68.60 1.90 45.90 16
28 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16
29 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16
30 H -0.25 -10.28 6.52 99.48 0.65 -9.63 16
31 C -0.13 -3.59 7.39 31.12 0.23 -3.36 16
32 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16
33 H 0.07 0.66 6.57 -2.38 -0.02 0.64 16
34 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16
35 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16
36 H 0.05 0.94 7.54 -2.38 -0.02 0.92 16
37 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16
38 H 0.08 0.63 6.56 -2.39 -0.02 0.61 16
39 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16
40 H 0.06 0.58 8.14 -2.39 -0.02 0.57 16
41 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16
42 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16
43 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16
44 H 0.07 0.83 7.88 -2.39 -0.02 0.81 16
45 H 0.11 1.13 8.08 -2.39 -0.02 1.11 16
46 H 0.10 1.17 7.88 -2.39 -0.02 1.15 16
47 H 0.42 5.93 8.47 -92.71 -0.79 5.14 16
48 H 0.06 1.52 7.84 -2.39 -0.02 1.50 16
49 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16
50 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16
51 H 0.09 2.27 7.89 -2.39 -0.02 2.26 16
52 H 0.37 15.41 5.76 -92.71 -0.53 14.87 16
53 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16
54 H 0.10 2.35 8.10 -2.39 -0.02 2.33 16
55 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16
Total: -1.00 -74.68 427.11 1.77 -72.92
By element:
Atomic # 1 Polarization: 32.49 SS G_CDS: -0.52 Total: 31.96 kcal
Atomic # 6 Polarization: -14.71 SS G_CDS: 5.17 Total: -9.54 kcal
Atomic # 7 Polarization: -108.88 SS G_CDS: -3.91 Total: -112.79 kcal
Atomic # 8 Polarization: -27.57 SS G_CDS: -0.87 Total: -28.45 kcal
Atomic # 14 Polarization: 44.00 SS G_CDS: 1.90 Total: 45.90 kcal
Total: -74.68 1.77 -72.92 kcal
The number of atoms in the molecule is 55
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001316628802.mol2 55
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -27.565 kcal
(2) G-P(sol) polarization free energy of solvation -74.685 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.250 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.767 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.917 kcal
(6) G-S(sol) free energy of system = (1) + (5) -100.482 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.17 seconds