Wall clock time and date at job start Tue Mar 31 2020 22:17:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.52996 * 109.47210 * 2 1
4 4 H 1.09006 * 109.47178 * 305.00408 * 3 2 1
5 5 C 1.53004 * 109.47025 * 64.99874 * 3 2 1
6 6 C 1.53003 * 109.47283 * 179.97438 * 5 3 2
7 7 C 1.52993 * 109.47265 * 300.00496 * 6 5 3
8 8 C 1.53004 * 109.47375 * 59.99560 * 7 6 5
9 9 C 1.52993 * 109.47353 * 185.00266 * 3 2 1
10 10 H 1.08999 * 109.47214 * 299.99536 * 9 3 2
11 11 O 1.42901 * 109.47198 * 60.00257 * 9 3 2
12 12 C 1.42907 * 113.99652 * 210.00286 * 11 9 3
13 13 C 1.50699 * 109.46795 * 180.02562 * 12 11 9
14 14 O 1.21281 * 120.00138 * 359.97438 * 13 12 11
15 15 N 1.34771 * 119.99910 * 180.02562 * 13 12 11
16 16 C 1.46497 * 119.99998 * 179.97438 * 15 13 12
17 17 C 1.52998 * 109.47270 * 179.97438 * 16 15 13
18 18 H 1.08999 * 112.85273 * 43.80497 * 17 16 15
19 19 C 1.53781 * 113.61891 * 175.00173 * 17 16 15
20 20 C 1.53777 * 87.08638 * 139.98025 * 19 17 16
21 21 H 1.08994 * 113.61655 * 219.94089 * 20 19 17
22 22 N 1.46499 * 113.61200 * 89.11383 * 20 19 17
23 23 C 1.36935 * 119.99926 * 155.00421 * 22 20 19
24 24 H 1.08005 * 119.99877 * 359.97438 * 23 22 20
25 25 C 1.38811 * 120.00369 * 179.73019 * 23 22 20
26 26 N 1.31617 * 119.99773 * 359.97438 * 25 23 22
27 27 Si 1.86800 * 120.00451 * 180.02562 * 25 23 22
28 28 H 1.48497 * 109.47154 * 89.99247 * 27 25 23
29 29 H 1.48496 * 109.47375 * 209.99772 * 27 25 23
30 30 H 1.48502 * 109.46736 * 329.99467 * 27 25 23
31 31 C 1.53776 * 113.61692 * 272.49975 * 17 16 15
32 32 H 1.08997 * 109.47302 * 179.97438 * 1 2 3
33 33 H 1.08998 * 109.47385 * 299.99905 * 1 2 3
34 34 H 1.08998 * 109.47439 * 59.99768 * 1 2 3
35 35 H 1.09005 * 109.46605 * 240.00415 * 2 1 3
36 36 H 1.08998 * 109.47439 * 120.00232 * 2 1 3
37 37 H 1.08998 * 109.47164 * 300.00154 * 5 3 2
38 38 H 1.08997 * 109.46723 * 60.00436 * 5 3 2
39 39 H 1.09008 * 109.46575 * 60.00181 * 6 5 3
40 40 H 1.08995 * 109.47139 * 180.02562 * 6 5 3
41 41 H 1.08997 * 109.47426 * 179.97438 * 7 6 5
42 42 H 1.09006 * 109.47094 * 299.99930 * 7 6 5
43 43 H 1.08998 * 109.47164 * 180.02562 * 8 7 6
44 44 H 1.09006 * 109.46707 * 60.00133 * 8 7 6
45 45 H 1.08995 * 109.47098 * 60.00001 * 12 11 9
46 46 H 1.08997 * 109.46945 * 299.99363 * 12 11 9
47 47 H 0.96995 * 119.99961 * 359.97438 * 15 13 12
48 48 H 1.09005 * 109.47490 * 60.00112 * 16 15 13
49 49 H 1.09002 * 109.47678 * 300.00075 * 16 15 13
50 50 H 1.09002 * 113.61584 * 25.43059 * 19 17 16
51 51 H 1.08998 * 113.61780 * 254.53297 * 19 17 16
52 52 H 0.97005 * 120.00261 * 335.00546 * 22 20 19
53 53 H 0.97004 * 120.00382 * 180.02562 * 26 25 23
54 54 H 1.08998 * 113.61700 * 105.46834 * 31 17 16
55 55 H 1.09006 * 113.61624 * 334.56250 * 31 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6053 1.9816 -0.8418
5 6 1.6352 2.1265 1.3074
6 6 2.1458 3.5688 1.3077
7 6 3.6705 3.5702 1.1822
8 6 4.0753 2.8861 -0.1251
9 6 3.5647 1.4443 -0.1258
10 1 3.9994 0.9054 0.7160
11 8 3.9428 0.8055 -1.3469
12 6 5.2121 0.1513 -1.2918
13 6 5.5081 -0.4838 -2.6260
14 8 4.7105 -0.3862 -3.5344
15 7 6.6587 -1.1611 -2.8094
16 6 6.9463 -1.7790 -4.1062
17 6 8.3052 -2.4794 -4.0474
18 1 8.4472 -3.0516 -3.1306
19 6 8.6490 -3.2655 -5.3236
20 6 10.0875 -2.7464 -5.1617
21 1 10.5585 -2.4644 -6.1032
22 7 10.9348 -3.6130 -4.3387
23 6 12.2941 -3.5982 -4.5039
24 1 12.7414 -2.9480 -5.2411
25 6 13.0975 -4.4152 -3.7203
26 7 12.5527 -5.2037 -2.8182
27 14 14.9518 -4.3945 -3.9451
28 1 15.5475 -3.3703 -3.0499
29 1 15.5063 -5.7300 -3.6074
30 1 15.2755 -4.0666 -5.3568
31 6 9.4882 -1.5586 -4.3903
32 1 -0.3634 -1.0276 -0.0005
33 1 -0.3634 0.5138 0.8900
34 1 -0.3634 0.5138 -0.8899
35 1 1.8932 -0.5138 -0.8901
36 1 1.8934 -0.5138 0.8899
37 1 0.5489 2.1252 1.3969
38 1 2.0699 1.5875 2.1491
39 1 1.7114 4.1081 0.4658
40 1 1.8578 4.0560 2.2392
41 1 4.0342 4.5977 1.1820
42 1 4.1049 3.0308 2.0241
43 1 5.1617 2.8867 -0.2143
44 1 3.6410 3.4255 -0.9670
45 1 5.1913 -0.6177 -0.5196
46 1 5.9871 0.8810 -1.0573
47 1 7.2965 -1.2395 -2.0828
48 1 6.9675 -1.0099 -4.8785
49 1 6.1711 -2.5084 -4.3412
50 1 8.1474 -2.8906 -6.2158
51 1 8.5590 -4.3456 -5.2087
52 1 10.5330 -4.1973 -3.6768
53 1 13.1141 -5.7743 -2.2703
54 1 10.0758 -1.2608 -3.5219
55 1 9.2161 -0.7170 -5.0274
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001316628803.mol2 55
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:17:08
Heat of formation + Delta-G solvation = -103.403736 kcal
Electronic energy + Delta-G solvation = -29254.864007 eV
Core-core repulsion = 25290.562399 eV
Total energy + Delta-G solvation = -3964.301608 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 338.236 amu
Computer time = 2.80 seconds
Orbital eigenvalues (eV)
-41.08691 -40.41002 -39.75019 -37.42367 -35.99000 -34.95932 -34.84556 -32.16755
-31.16580 -30.17185 -29.37546 -27.45520 -26.43118 -25.57889 -24.80360 -23.23119
-22.97585 -21.80578 -21.55200 -20.81857 -19.82987 -19.33377 -18.25161 -17.94213
-17.07309 -16.86593 -16.67839 -16.23879 -15.95337 -15.74182 -15.60532 -15.49355
-15.11168 -14.76375 -14.70968 -14.63346 -14.22136 -14.18211 -13.89717 -13.71484
-13.55705 -13.29457 -13.12818 -12.93686 -12.91128 -12.63294 -12.54497 -12.36155
-12.16483 -12.07187 -12.06507 -11.96806 -11.67004 -11.54460 -11.47567 -11.41819
-11.26884 -11.10056 -11.00166 -10.87288 -10.69022 -10.36148 -10.08269 -8.99395
-7.95097 -5.23144 1.48646 1.49419 1.56611 1.58027 1.83386 2.56080
2.95946 3.37571 3.61196 3.70814 3.74124 3.78746 3.79558 3.93136
3.97795 4.12564 4.16090 4.19602 4.23368 4.29104 4.30299 4.33373
4.36341 4.41043 4.49536 4.51228 4.58082 4.72670 4.76188 4.76877
4.82514 4.90878 4.93453 4.98987 4.99832 5.10677 5.11887 5.16007
5.20048 5.25564 5.27895 5.30726 5.35376 5.35494 5.38863 5.48120
5.49854 5.54976 5.56663 5.66598 6.16857 6.28632 6.55032 7.21005
7.33845 8.10940 8.33475 9.28042
Molecular weight = 338.24amu
Principal moments of inertia in cm(-1)
A = 0.018490 B = 0.001678 C = 0.001622
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1513.973465 B =16677.933104 C =17255.699334
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.118 4.118
3 C -0.080 4.080
4 H 0.060 0.940
5 C -0.108 4.108
6 C -0.122 4.122
7 C -0.114 4.114
8 C -0.142 4.142
9 C 0.090 3.910
10 H 0.076 0.924
11 O -0.383 6.383
12 C 0.046 3.954
13 C 0.508 3.492
14 O -0.575 6.575
15 N -0.714 5.714
16 C 0.141 3.859
17 C -0.100 4.100
18 H 0.084 0.916
19 C -0.136 4.136
20 C 0.143 3.857
21 H 0.059 0.941
22 N -0.719 5.719
23 C -0.242 4.242
24 H 0.076 0.924
25 C -0.075 4.075
26 N -0.968 5.968
27 Si 0.972 3.028
28 H -0.287 1.287
29 H -0.297 1.297
30 H -0.271 1.271
31 C -0.152 4.152
32 H 0.053 0.947
33 H 0.069 0.931
34 H 0.046 0.954
35 H 0.045 0.955
36 H 0.067 0.933
37 H 0.077 0.923
38 H 0.072 0.928
39 H 0.057 0.943
40 H 0.076 0.924
41 H 0.070 0.930
42 H 0.071 0.929
43 H 0.066 0.934
44 H 0.056 0.944
45 H 0.104 0.896
46 H 0.102 0.898
47 H 0.414 0.586
48 H 0.065 0.935
49 H 0.061 0.939
50 H 0.103 0.897
51 H 0.058 0.942
52 H 0.375 0.625
53 H 0.251 0.749
54 H 0.050 0.950
55 H 0.090 0.910
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.918 16.843 10.756 30.407
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.156 4.156
3 C -0.098 4.098
4 H 0.079 0.921
5 C -0.146 4.146
6 C -0.160 4.160
7 C -0.151 4.151
8 C -0.179 4.179
9 C 0.033 3.967
10 H 0.094 0.906
11 O -0.302 6.302
12 C -0.034 4.034
13 C 0.295 3.705
14 O -0.455 6.455
15 N -0.368 5.368
16 C 0.018 3.982
17 C -0.119 4.119
18 H 0.103 0.897
19 C -0.175 4.175
20 C 0.033 3.967
21 H 0.077 0.923
22 N -0.357 5.357
23 C -0.374 4.374
24 H 0.094 0.906
25 C -0.267 4.267
26 N -0.619 5.619
27 Si 0.801 3.199
28 H -0.214 1.214
29 H -0.223 1.223
30 H -0.195 1.195
31 C -0.193 4.193
32 H 0.072 0.928
33 H 0.087 0.913
34 H 0.065 0.935
35 H 0.064 0.936
36 H 0.085 0.915
37 H 0.096 0.904
38 H 0.090 0.910
39 H 0.076 0.924
40 H 0.095 0.905
41 H 0.089 0.911
42 H 0.090 0.910
43 H 0.085 0.915
44 H 0.075 0.925
45 H 0.122 0.878
46 H 0.120 0.880
47 H 0.251 0.749
48 H 0.084 0.916
49 H 0.079 0.921
50 H 0.122 0.878
51 H 0.077 0.923
52 H 0.207 0.793
53 H 0.060 0.940
54 H 0.069 0.931
55 H 0.108 0.892
Dipole moment (debyes) X Y Z Total
from point charges -23.416 16.944 9.852 30.536
hybrid contribution 1.493 -0.593 0.453 1.669
sum -21.922 16.351 10.306 29.226
Atomic orbital electron populations
1.21791 0.95151 1.01764 1.02032 1.21492 0.96518 0.96012 1.01558
1.21223 0.92933 0.96662 0.99027 0.92118 1.21607 1.01637 0.95514
0.95806 1.21587 0.95411 0.96642 1.02343 1.21492 0.96312 1.00885
0.96450 1.22039 1.01094 0.95747 0.99065 1.22366 0.95697 0.92753
0.85903 0.90592 1.88019 1.34779 1.71270 1.36123 1.22328 0.88448
0.98389 0.94218 1.20850 0.81107 0.78275 0.90232 1.90698 1.48433
1.60941 1.45386 1.45879 1.20615 1.54350 1.15941 1.21289 0.95800
0.96300 0.84832 1.22487 0.92601 0.97787 0.99043 0.89729 1.23354
0.96681 0.99609 0.97860 1.21389 0.90285 0.91493 0.93555 0.92283
1.42287 1.02749 1.47324 1.43357 1.19670 0.84236 1.18170 1.15356
0.90611 1.25532 1.02297 0.99686 0.99172 1.69804 1.35447 1.30078
1.26535 0.85159 0.80482 0.76335 0.77898 1.21443 1.22336 1.19548
1.23705 0.96928 0.97819 1.00834 0.92767 0.91250 0.93462 0.93567
0.91450 0.90448 0.90977 0.92449 0.90518 0.91118 0.90991 0.91534
0.92535 0.87830 0.88038 0.74914 0.91626 0.92064 0.87820 0.92343
0.79306 0.94033 0.93103 0.89177
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.01 9.67 71.98 0.70 -1.31 16
2 C -0.12 -1.86 5.33 30.59 0.16 -1.70 16
3 C -0.08 -1.18 1.93 -10.80 -0.02 -1.20 16
4 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16
5 C -0.11 -1.08 4.96 30.60 0.15 -0.93 16
6 C -0.12 -1.14 5.92 30.59 0.18 -0.96 16
7 C -0.11 -1.13 5.92 30.59 0.18 -0.95 16
8 C -0.14 -1.98 5.54 30.58 0.17 -1.81 16
9 C 0.09 1.40 2.04 30.58 0.06 1.47 16
10 H 0.08 0.94 7.79 -2.39 -0.02 0.92 16
11 O -0.38 -8.61 8.76 -129.94 -1.14 -9.74 16
12 C 0.05 0.82 6.23 71.24 0.44 1.27 16
13 C 0.51 13.00 7.91 87.66 0.69 13.69 16
14 O -0.58 -20.42 16.50 16.00 0.26 -20.15 16
15 N -0.71 -15.89 5.56 -463.07 -2.57 -18.46 16
16 C 0.14 3.54 5.51 86.38 0.48 4.02 16
17 C -0.10 -2.78 3.63 -10.27 -0.04 -2.82 16
18 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16
19 C -0.14 -4.10 7.39 31.12 0.23 -3.87 16
20 C 0.14 5.36 4.56 45.52 0.21 5.57 16
21 H 0.06 2.24 8.10 -2.39 -0.02 2.22 16
22 N -0.72 -34.98 5.31 -320.46 -1.70 -36.68 16
23 C -0.24 -13.17 9.97 84.03 0.84 -12.33 16
24 H 0.08 3.96 7.83 -2.91 -0.02 3.94 16
25 C -0.07 -4.19 5.50 84.86 0.47 -3.73 16
26 N -0.97 -57.90 13.06 21.65 0.28 -57.62 16
27 Si 0.97 45.32 29.55 68.60 2.03 47.35 16
28 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16
29 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16
30 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16
31 C -0.15 -4.71 7.43 31.12 0.23 -4.48 16
32 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16
33 H 0.07 0.71 6.56 -2.39 -0.02 0.69 16
34 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16
35 H 0.05 0.98 7.54 -2.38 -0.02 0.96 16
36 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16
37 H 0.08 0.68 6.56 -2.39 -0.02 0.66 16
38 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16
39 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16
40 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16
41 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16
42 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16
43 H 0.07 0.88 7.87 -2.39 -0.02 0.86 16
44 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16
45 H 0.10 1.33 8.08 -2.39 -0.02 1.31 16
46 H 0.10 1.34 7.87 -2.39 -0.02 1.32 16
47 H 0.41 7.28 8.47 -92.71 -0.79 6.49 16
48 H 0.07 1.70 7.84 -2.38 -0.02 1.68 16
49 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16
50 H 0.10 2.61 8.10 -2.39 -0.02 2.59 16
51 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16
52 H 0.37 19.48 7.90 -92.70 -0.73 18.74 16
53 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16
54 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16
55 H 0.09 2.42 7.90 -2.38 -0.02 2.40 16
Total: -1.00 -70.45 430.19 1.63 -68.82
By element:
Atomic # 1 Polarization: 37.23 SS G_CDS: -0.66 Total: 36.56 kcal
Atomic # 6 Polarization: -15.20 SS G_CDS: 5.13 Total: -10.07 kcal
Atomic # 7 Polarization: -108.77 SS G_CDS: -3.99 Total: -112.76 kcal
Atomic # 8 Polarization: -29.02 SS G_CDS: -0.87 Total: -29.90 kcal
Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal
Total: -70.45 1.63 -68.82 kcal
The number of atoms in the molecule is 55
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001316628803.mol2 55
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -34.585 kcal
(2) G-P(sol) polarization free energy of solvation -70.450 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.035 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.631 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.819 kcal
(6) G-S(sol) free energy of system = (1) + (5) -103.404 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.80 seconds