Wall clock time and date at job start Wed Apr 1 2020 00:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47407 * 2 1 4 4 H 1.09000 * 109.47041 * 305.30314 * 3 2 1 5 5 O 1.42906 * 109.46704 * 65.29933 * 3 2 1 6 6 C 1.42895 * 113.99755 * 269.99907 * 5 3 2 7 7 C 1.54262 * 110.03365 * 267.16785 * 6 5 3 8 8 C 1.54888 * 104.19748 * 217.10744 * 7 6 5 9 9 C 1.54890 * 102.74954 * 37.94364 * 8 7 6 10 10 C 1.53877 * 110.02932 * 150.00383 * 6 5 3 11 11 C 1.50694 * 109.46998 * 185.29658 * 3 2 1 12 12 O 1.21281 * 120.00169 * 249.62315 * 11 3 2 13 13 N 1.34782 * 119.99982 * 69.63028 * 11 3 2 14 14 C 1.47025 * 125.64611 * 5.04246 * 13 11 3 15 15 C 1.54342 * 107.26340 * 178.85282 * 14 13 11 16 16 C 1.55153 * 103.01767 * 338.13956 * 15 14 13 17 17 H 1.09003 * 111.00839 * 277.22928 * 16 15 14 18 18 C 1.53004 * 111.03640 * 153.39697 * 16 15 14 19 19 N 1.46497 * 109.46886 * 72.78094 * 18 16 15 20 20 C 1.46501 * 120.00181 * 90.00605 * 19 18 16 21 21 C 1.36939 * 120.00242 * 269.99889 * 19 18 16 22 22 H 1.08000 * 119.99608 * 23.91169 * 21 19 18 23 23 C 1.38807 * 120.00212 * 203.90532 * 21 19 18 24 24 N 1.31620 * 120.00115 * 12.29850 * 23 21 19 25 25 Si 1.86799 * 120.00014 * 192.30024 * 23 21 19 26 26 H 1.48496 * 109.47365 * 90.00113 * 25 23 21 27 27 H 1.48501 * 109.47266 * 209.99889 * 25 23 21 28 28 H 1.48497 * 109.47368 * 330.00119 * 25 23 21 29 29 C 1.47425 * 125.64694 * 185.35196 * 13 11 3 30 30 H 1.09000 * 109.47637 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47273 * 300.00178 * 1 2 3 32 32 H 1.09006 * 109.47264 * 59.99582 * 1 2 3 33 33 H 1.08996 * 109.47320 * 120.00561 * 2 1 3 34 34 H 1.09008 * 109.47042 * 240.00205 * 2 1 3 35 35 H 1.09004 * 110.02034 * 28.61383 * 6 5 3 36 36 H 1.09002 * 110.48667 * 335.78342 * 7 6 5 37 37 H 1.09004 * 110.48765 * 98.43208 * 7 6 5 38 38 H 1.09000 * 110.76041 * 279.63145 * 8 7 6 39 39 H 1.09008 * 110.91631 * 156.32806 * 8 7 6 40 40 H 1.09001 * 110.49072 * 203.37985 * 9 8 7 41 41 H 1.09003 * 110.60004 * 80.78878 * 9 8 7 42 42 H 1.09005 * 110.02788 * 238.56872 * 10 6 5 43 43 H 1.09001 * 110.03552 * 359.97438 * 10 6 5 44 44 H 1.08999 * 109.88108 * 298.39886 * 14 13 11 45 45 H 1.08994 * 109.88191 * 59.56202 * 14 13 11 46 46 H 1.09001 * 110.84440 * 219.67217 * 15 14 13 47 47 H 1.08992 * 110.66645 * 96.52183 * 15 14 13 48 48 H 1.08992 * 109.47443 * 192.78326 * 18 16 15 49 49 H 1.09007 * 109.46700 * 312.78533 * 18 16 15 50 50 H 1.08999 * 109.47464 * 88.85246 * 20 19 18 51 51 H 1.08996 * 109.47188 * 208.86093 * 20 19 18 52 52 H 1.09009 * 109.46630 * 328.85831 * 20 19 18 53 53 H 0.97000 * 120.00336 * 179.97438 * 24 23 21 54 54 H 1.08990 * 110.36839 * 322.92716 * 29 13 11 55 55 H 1.09001 * 110.36538 * 85.25684 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6012 1.9830 -0.8387 5 8 1.6680 2.0792 1.2241 6 6 0.3985 2.7335 1.1764 7 6 0.5820 4.2153 0.7887 8 6 -0.4770 4.9636 1.6357 9 6 -0.4433 4.1962 2.9808 10 6 -0.2534 2.7214 2.5702 11 6 3.5412 1.4444 -0.1312 12 8 4.2316 1.7804 0.8077 13 7 4.1168 1.0728 -1.2919 14 6 3.4040 0.7450 -2.5353 15 6 4.4701 0.4069 -3.5989 16 6 5.7435 1.1037 -3.0511 17 1 5.7573 2.1600 -3.3198 18 6 7.0096 0.3993 -3.5429 19 7 7.2100 0.6913 -4.9644 20 6 7.9975 1.8586 -5.3686 21 6 6.6612 -0.1269 -5.9155 22 1 5.7975 -0.7295 -5.6761 23 6 7.2148 -0.1817 -7.1872 24 7 8.3950 0.3548 -7.4149 25 14 6.2849 -1.0167 -8.5756 26 1 5.4239 -0.0215 -9.2635 27 1 7.2528 -1.5886 -9.5459 28 1 5.4389 -2.1039 -8.0211 29 6 5.5649 0.9217 -1.5231 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.8933 -0.5138 -0.8901 35 1 -0.2509 2.2360 0.4560 36 1 1.5854 4.5554 1.0453 37 1 0.3901 4.3580 -0.2748 38 1 -1.4620 4.8914 1.1745 39 1 -0.1946 6.0067 1.7790 40 1 -1.3835 4.3249 3.5171 41 1 0.3933 4.5324 3.5933 42 1 -1.2196 2.2187 2.5260 43 1 0.3983 2.2160 3.2829 44 1 2.7530 -0.1142 -2.3739 45 1 2.8156 1.6022 -2.8623 46 1 4.1931 0.8175 -4.5699 47 1 4.6186 -0.6708 -3.6656 48 1 7.8682 0.7562 -2.9742 49 1 6.9038 -0.6767 -3.4044 50 1 9.0481 1.5788 -5.4469 51 1 7.6443 2.2184 -6.3349 52 1 7.8862 2.6473 -4.6244 53 1 8.7821 0.3162 -8.3035 54 1 6.1176 1.6898 -0.9824 55 1 5.8962 -0.0710 -1.2181 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317854342.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:02:52 Heat of formation + Delta-G solvation = -86.220085 kcal Electronic energy + Delta-G solvation = -30790.477181 eV Core-core repulsion = 26826.920712 eV Total energy + Delta-G solvation = -3963.556469 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.48922 -40.07086 -38.82714 -37.16258 -37.06156 -34.37927 -33.61031 -32.13211 -30.39510 -29.81836 -29.43099 -28.07130 -27.74130 -26.49676 -24.30959 -23.11984 -22.83662 -21.63420 -21.31472 -21.07582 -20.47703 -18.73701 -18.39646 -18.05292 -17.20267 -16.80554 -16.70612 -16.39272 -16.01111 -15.76039 -15.38413 -15.14333 -14.91635 -14.76853 -14.57454 -14.38103 -14.27453 -13.99177 -13.70798 -13.45832 -13.34087 -13.14493 -13.06920 -12.94548 -12.90577 -12.80019 -12.60373 -12.38358 -12.17406 -12.13650 -12.04028 -11.98026 -11.94330 -11.89349 -11.78227 -11.54326 -11.49799 -11.37988 -11.29719 -10.91046 -10.56004 -10.35444 -9.70133 -8.70342 -7.77763 -5.25216 1.47465 1.51072 1.51712 1.60119 1.67767 2.55715 2.81039 3.34123 3.38015 3.58848 3.62428 3.67754 3.73885 3.81863 3.87762 3.96047 4.01589 4.15058 4.20969 4.30043 4.38150 4.43352 4.47161 4.51394 4.55777 4.60390 4.64622 4.72563 4.74746 4.81013 4.86312 4.86859 4.89834 4.92430 5.00003 5.01445 5.07009 5.10623 5.12781 5.16430 5.19791 5.24715 5.28321 5.31942 5.34966 5.41949 5.44287 5.51904 5.67588 5.75492 6.20787 6.39603 6.47843 7.06057 7.20815 7.92425 8.38945 9.27957 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.019563 B = 0.002246 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.940505 B =12463.330307 C =12820.062230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.139 4.139 3 C 0.084 3.916 4 H 0.103 0.897 5 O -0.376 6.376 6 C 0.069 3.931 7 C -0.155 4.155 8 C -0.118 4.118 9 C -0.124 4.124 10 C -0.123 4.123 11 C 0.521 3.479 12 O -0.577 6.577 13 N -0.613 5.613 14 C 0.098 3.902 15 C -0.109 4.109 16 C -0.104 4.104 17 H 0.065 0.935 18 C 0.161 3.839 19 N -0.615 5.615 20 C 0.177 3.823 21 C -0.245 4.245 22 H 0.083 0.917 23 C -0.062 4.062 24 N -0.945 5.945 25 Si 0.965 3.035 26 H -0.288 1.288 27 H -0.304 1.304 28 H -0.263 1.263 29 C 0.116 3.884 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.050 0.950 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.069 0.931 40 H 0.085 0.915 41 H 0.054 0.946 42 H 0.093 0.907 43 H 0.061 0.939 44 H 0.096 0.904 45 H 0.082 0.918 46 H 0.078 0.922 47 H 0.075 0.925 48 H 0.042 0.958 49 H 0.052 0.948 50 H -0.006 1.006 51 H 0.025 0.975 52 H 0.022 0.978 53 H 0.245 0.755 54 H 0.061 0.939 55 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.267 3.333 16.265 28.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.177 4.177 3 C 0.023 3.977 4 H 0.121 0.879 5 O -0.295 6.295 6 C 0.012 3.988 7 C -0.193 4.193 8 C -0.155 4.155 9 C -0.161 4.161 10 C -0.160 4.160 11 C 0.311 3.689 12 O -0.457 6.457 13 N -0.347 5.347 14 C -0.024 4.024 15 C -0.147 4.147 16 C -0.126 4.126 17 H 0.083 0.917 18 C 0.034 3.966 19 N -0.338 5.338 20 C 0.032 3.968 21 C -0.375 4.375 22 H 0.101 0.899 23 C -0.256 4.256 24 N -0.593 5.593 25 Si 0.794 3.206 26 H -0.215 1.215 27 H -0.231 1.231 28 H -0.187 1.187 29 C -0.007 4.007 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.108 0.892 35 H 0.113 0.887 36 H 0.069 0.931 37 H 0.094 0.906 38 H 0.104 0.896 39 H 0.088 0.912 40 H 0.104 0.896 41 H 0.073 0.927 42 H 0.112 0.888 43 H 0.080 0.920 44 H 0.114 0.886 45 H 0.101 0.899 46 H 0.096 0.904 47 H 0.093 0.907 48 H 0.060 0.940 49 H 0.070 0.930 50 H 0.013 0.987 51 H 0.044 0.956 52 H 0.040 0.960 53 H 0.054 0.946 54 H 0.079 0.921 55 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -22.745 3.527 16.866 28.535 hybrid contribution 0.575 -0.166 -1.199 1.340 sum -22.170 3.362 15.667 27.355 Atomic orbital electron populations 1.21931 0.92863 1.03537 1.02771 1.22030 0.98658 0.93436 1.03575 1.21944 0.89608 0.96537 0.89569 0.87931 1.88095 1.37910 1.71068 1.32385 1.23368 0.84096 0.92108 0.99253 1.22969 0.99762 0.95748 1.00801 1.22427 0.98995 0.98950 0.95177 1.22354 1.02188 0.94108 0.97484 1.22257 1.00753 0.98003 0.94995 1.20753 0.91066 0.76208 0.80919 1.90677 1.65984 1.49151 1.39846 1.48567 1.08260 1.66851 1.11030 1.22416 0.95492 1.01862 0.82592 1.22512 0.93233 1.01141 0.97785 1.22834 0.97468 1.00253 0.92073 0.91676 1.20743 0.94218 0.97675 0.83915 1.44095 1.60901 1.27536 1.01219 1.20496 0.93452 0.86934 0.95969 1.19593 1.07420 1.19022 0.91437 0.89894 1.25844 0.96606 1.01645 1.01504 1.70244 1.16899 1.51291 1.20877 0.85280 0.77512 0.78424 0.79352 1.21486 1.23077 1.18691 1.22194 0.80981 1.01439 0.96121 0.90841 0.91900 0.90917 0.92070 0.89159 0.88748 0.93134 0.90597 0.89597 0.91184 0.89646 0.92731 0.88803 0.92015 0.88632 0.89949 0.90374 0.90678 0.93978 0.92957 0.98738 0.95621 0.95960 0.94614 0.92072 0.90808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 8.59 71.98 0.62 -1.06 16 2 C -0.14 -2.29 5.56 30.59 0.17 -2.12 16 3 C 0.08 1.81 2.06 29.85 0.06 1.87 16 4 H 0.10 1.72 7.59 -2.39 -0.02 1.70 16 5 O -0.38 -9.21 9.03 -130.12 -1.17 -10.38 16 6 C 0.07 1.14 2.09 31.32 0.07 1.20 16 7 C -0.15 -2.58 6.56 31.67 0.21 -2.37 16 8 C -0.12 -1.45 6.91 31.88 0.22 -1.23 16 9 C -0.12 -1.59 6.83 31.67 0.22 -1.37 16 10 C -0.12 -1.75 6.45 31.32 0.20 -1.55 16 11 C 0.52 15.42 7.17 87.65 0.63 16.05 16 12 O -0.58 -22.70 16.76 15.83 0.27 -22.44 16 13 N -0.61 -16.26 3.33 -811.77 -2.70 -18.96 16 14 C 0.10 2.02 6.14 86.73 0.53 2.56 16 15 C -0.11 -2.93 5.28 31.79 0.17 -2.76 16 16 C -0.10 -3.26 3.26 -9.40 -0.03 -3.29 16 17 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 18 C 0.16 6.08 5.20 86.38 0.45 6.53 16 19 N -0.61 -29.20 2.91 -726.93 -2.11 -31.31 16 20 C 0.18 8.65 8.98 127.77 1.15 9.80 16 21 C -0.24 -12.43 9.16 84.03 0.77 -11.66 16 22 H 0.08 3.92 7.06 -2.91 -0.02 3.90 16 23 C -0.06 -3.34 5.07 84.86 0.43 -2.91 16 24 N -0.95 -55.38 10.77 21.65 0.23 -55.15 16 25 Si 0.97 43.33 29.57 68.60 2.03 45.36 16 26 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 27 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 28 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 29 C 0.12 3.37 6.40 86.86 0.56 3.93 16 30 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.06 0.71 5.79 -2.39 -0.01 0.69 16 32 H 0.07 0.58 8.02 -2.38 -0.02 0.56 16 33 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.09 1.30 5.65 -2.38 -0.01 1.29 16 35 H 0.09 1.13 5.34 -2.38 -0.01 1.12 16 36 H 0.05 1.13 8.08 -2.39 -0.02 1.11 16 37 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 38 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 40 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 43 H 0.06 1.11 7.95 -2.39 -0.02 1.09 16 44 H 0.10 1.49 5.97 -2.39 -0.01 1.48 16 45 H 0.08 1.45 8.11 -2.39 -0.02 1.44 16 46 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 47 H 0.07 2.05 7.75 -2.39 -0.02 2.03 16 48 H 0.04 1.55 8.07 -2.39 -0.02 1.53 16 49 H 0.05 1.95 7.87 -2.38 -0.02 1.93 16 50 H -0.01 -0.31 7.68 -2.39 -0.02 -0.33 16 51 H 0.02 1.35 6.96 -2.39 -0.02 1.33 16 52 H 0.02 0.94 8.08 -2.38 -0.02 0.92 16 53 H 0.24 14.06 8.31 -92.71 -0.77 13.29 16 54 H 0.06 1.95 7.99 -2.39 -0.02 1.93 16 55 H 0.07 2.07 8.04 -2.39 -0.02 2.05 16 Total: -1.00 -70.25 417.11 3.79 -66.46 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 0.84 Total: 14.81 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: 6.41 Total: 11.61 kcal Atomic # 7 Polarization: -100.84 SS G_CDS: -4.58 Total: -105.42 kcal Atomic # 8 Polarization: -31.91 SS G_CDS: -0.91 Total: -32.82 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -70.25 3.79 -66.46 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317854342.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.762 kcal (2) G-P(sol) polarization free energy of solvation -70.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds