Wall clock time and date at job start Wed Apr 1 2020 00:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47156 * 2 1 4 4 H 1.08995 * 109.47343 * 54.85569 * 3 2 1 5 5 O 1.42904 * 109.46646 * 294.85298 * 3 2 1 6 6 C 1.42904 * 113.99541 * 153.53285 * 5 3 2 7 7 C 1.54888 * 110.75736 * 146.81965 * 6 5 3 8 8 C 1.54266 * 104.31489 * 156.31898 * 7 6 5 9 9 C 1.53871 * 106.59823 * 336.32749 * 8 7 6 10 10 C 1.54266 * 106.60007 * 359.97438 * 9 8 7 11 11 C 1.50701 * 109.47058 * 174.85778 * 3 2 1 12 12 O 1.21283 * 120.00202 * 119.99413 * 11 3 2 13 13 N 1.34780 * 119.99700 * 299.99922 * 11 3 2 14 14 C 1.46507 * 119.99600 * 176.04314 * 13 11 3 15 15 C 1.52995 * 109.46666 * 175.63514 * 14 13 11 16 16 C 1.52998 * 109.47279 * 55.63123 * 14 13 11 17 17 N 1.46497 * 109.47009 * 59.99687 * 16 14 13 18 18 C 1.36937 * 120.00164 * 179.97438 * 17 16 14 19 19 H 1.08003 * 120.00075 * 359.97438 * 18 17 16 20 20 C 1.38811 * 120.00196 * 180.02562 * 18 17 16 21 21 N 1.31614 * 120.00136 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99879 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47023 * 90.00085 * 22 20 18 24 24 H 1.48505 * 109.47246 * 209.99973 * 22 20 18 25 25 H 1.48500 * 109.47175 * 330.00195 * 22 20 18 26 26 C 1.52999 * 109.47044 * 295.62901 * 14 13 11 27 27 C 1.53003 * 117.49808 * 3.13481 * 26 14 13 28 28 C 1.53002 * 117.50016 * 294.47126 * 26 14 13 29 29 H 1.09007 * 109.46661 * 65.07578 * 1 2 3 30 30 H 1.08999 * 109.47322 * 185.07962 * 1 2 3 31 31 H 1.09004 * 109.47226 * 305.08428 * 1 2 3 32 32 H 1.08999 * 109.46960 * 239.99458 * 2 1 3 33 33 H 1.09000 * 109.46604 * 119.99491 * 2 1 3 34 34 H 1.08994 * 110.81864 * 23.48163 * 6 5 3 35 35 H 1.09005 * 110.48788 * 37.57559 * 7 6 5 36 36 H 1.09005 * 110.48590 * 275.06772 * 7 6 5 37 37 H 1.08997 * 110.02769 * 95.60933 * 8 7 6 38 38 H 1.09000 * 110.03218 * 217.03628 * 8 7 6 39 39 H 1.09001 * 110.03361 * 119.28447 * 9 8 7 40 40 H 1.09004 * 110.03063 * 240.66335 * 9 8 7 41 41 H 1.09001 * 110.48865 * 142.29076 * 10 9 8 42 42 H 1.09005 * 110.48715 * 264.79887 * 10 9 8 43 43 H 0.96991 * 120.00257 * 356.04031 * 13 11 3 44 44 H 1.08994 * 109.47734 * 59.99639 * 15 14 13 45 45 H 1.09000 * 109.47106 * 180.02562 * 15 14 13 46 46 H 1.09008 * 109.47341 * 299.99498 * 15 14 13 47 47 H 1.08999 * 109.46815 * 179.97438 * 16 14 13 48 48 H 1.09000 * 109.47068 * 299.99782 * 16 14 13 49 49 H 0.97009 * 120.00303 * 0.02562 * 17 16 14 50 50 H 0.97001 * 120.00318 * 179.97438 * 21 20 18 51 51 H 1.09000 * 115.54831 * 148.79687 * 26 14 13 52 52 H 1.09000 * 117.50121 * 359.97438 * 27 26 14 53 53 H 1.08997 * 117.50185 * 145.02070 * 27 26 14 54 54 H 1.08994 * 117.49508 * 214.97492 * 28 26 14 55 55 H 1.08993 * 117.49834 * 0.02562 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6035 1.9822 0.8403 5 8 1.6649 2.0802 -1.2226 6 6 1.5362 3.4999 -1.1218 7 6 1.9518 4.1843 -2.4477 8 6 1.2171 5.5405 -2.4235 9 6 0.0056 5.3675 -1.4908 10 6 0.0459 3.9120 -0.9812 11 6 3.5417 1.4444 0.1273 12 8 4.2235 1.9428 -0.7431 13 7 4.1269 0.8920 1.2085 14 6 5.5876 0.8161 1.2921 15 6 5.9917 0.2504 2.6550 16 6 6.1816 2.2160 1.1245 17 7 5.6766 3.0910 2.1854 18 6 6.0738 4.4003 2.2402 19 1 6.7597 4.7879 1.5014 20 6 5.5957 5.2292 3.2458 21 7 4.7610 4.7566 4.1469 22 14 6.1370 7.0155 3.3200 23 1 5.1989 7.8504 2.5274 24 1 6.1362 7.4748 4.7322 25 1 7.5063 7.1415 2.7593 26 6 6.1150 -0.0977 0.1840 27 6 5.0962 -0.6729 -0.8020 28 6 5.7387 -1.5792 0.2512 29 1 -0.3633 0.4331 -0.9320 30 1 -0.3634 -1.0236 0.0910 31 1 -0.3634 0.5907 0.8410 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.1240 3.8839 -0.2881 35 1 1.6273 3.5898 -3.3019 36 1 3.0309 4.3354 -2.4771 37 1 1.8780 6.3163 -2.0370 38 1 0.8814 5.8013 -3.4272 39 1 0.0785 6.0594 -0.6517 40 1 -0.9181 5.5452 -2.0416 41 1 -0.2655 3.8643 0.0623 42 1 -0.5883 3.2744 -1.5971 43 1 3.5811 0.5449 1.9313 44 1 5.5685 -0.7470 2.7744 45 1 7.0784 0.1942 2.7174 46 1 5.6160 0.9014 3.4445 47 1 7.2683 2.1595 1.1871 48 1 5.8937 2.6190 0.1535 49 1 5.0614 2.7426 2.8497 50 1 4.4272 5.3357 4.8499 51 1 7.1027 0.1537 -0.2023 52 1 4.0502 -0.4006 -0.6610 53 1 5.4138 -0.8003 -1.8368 54 1 6.4787 -2.3024 -0.0913 55 1 5.1151 -1.9028 1.0845 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318717661.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:10:06 Heat of formation + Delta-G solvation = -71.076542 kcal Electronic energy + Delta-G solvation = -32606.602953 eV Core-core repulsion = 28643.703158 eV Total energy + Delta-G solvation = -3962.899796 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 3.67 seconds Orbital eigenvalues (eV) -41.80662 -39.98710 -38.38256 -37.03373 -36.58054 -35.03213 -34.30435 -32.95226 -31.19629 -29.66195 -28.98607 -27.76521 -27.46348 -25.51763 -23.36208 -23.09973 -22.87712 -21.82047 -21.63053 -21.12439 -20.33291 -19.29961 -18.41397 -18.17071 -17.19270 -16.90464 -16.79442 -16.31499 -15.83162 -15.56406 -15.39379 -15.34059 -14.96214 -14.91515 -14.63884 -14.44794 -14.17965 -13.61752 -13.51424 -13.42074 -13.38161 -13.17521 -13.02608 -12.98295 -12.86681 -12.78967 -12.39652 -12.27146 -12.22458 -12.14639 -12.09408 -12.03351 -11.95228 -11.77559 -11.73552 -11.52789 -11.32846 -11.26804 -11.13249 -10.95805 -10.79316 -9.97628 -9.87888 -8.91843 -7.96714 -5.21726 1.41566 1.42707 1.51195 1.77887 2.15326 2.52683 2.67848 2.97202 3.36237 3.57136 3.66382 3.67025 3.73878 3.87935 3.96810 3.97542 4.02372 4.08134 4.19200 4.23204 4.36542 4.36859 4.41585 4.47614 4.54077 4.57361 4.61277 4.66197 4.72675 4.82318 4.84992 4.88095 4.90557 4.93266 4.97724 5.01254 5.07053 5.09142 5.10410 5.12761 5.22033 5.23494 5.25935 5.32691 5.33573 5.36814 5.41796 5.44799 5.45356 5.77038 6.13950 6.26542 6.73055 7.33702 7.46144 8.08921 8.38177 9.26198 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.007059 B = 0.005682 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3965.710562 B = 4926.233507 C = 7664.365930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.107 4.107 3 C 0.074 3.926 4 H 0.082 0.918 5 O -0.352 6.352 6 C 0.082 3.918 7 C -0.117 4.117 8 C -0.121 4.121 9 C -0.120 4.120 10 C -0.133 4.133 11 C 0.493 3.507 12 O -0.551 6.551 13 N -0.707 5.707 14 C 0.209 3.791 15 C -0.138 4.138 16 C 0.141 3.859 17 N -0.727 5.727 18 C -0.241 4.241 19 H 0.058 0.942 20 C -0.066 4.066 21 N -0.961 5.961 22 Si 0.963 3.037 23 H -0.291 1.291 24 H -0.288 1.288 25 H -0.276 1.276 26 C -0.165 4.165 27 C -0.174 4.174 28 C -0.146 4.146 29 H 0.053 0.947 30 H 0.077 0.923 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.099 0.901 34 H 0.034 0.966 35 H 0.080 0.920 36 H 0.043 0.957 37 H 0.053 0.947 38 H 0.087 0.913 39 H 0.059 0.941 40 H 0.090 0.910 41 H 0.066 0.934 42 H 0.087 0.913 43 H 0.406 0.594 44 H 0.090 0.910 45 H 0.070 0.930 46 H 0.048 0.952 47 H 0.011 0.989 48 H 0.026 0.974 49 H 0.377 0.623 50 H 0.251 0.749 51 H 0.096 0.904 52 H 0.092 0.908 53 H 0.080 0.920 54 H 0.107 0.893 55 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.595 -13.235 -8.573 18.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.144 4.144 3 C 0.012 3.988 4 H 0.100 0.900 5 O -0.269 6.269 6 C 0.024 3.976 7 C -0.154 4.154 8 C -0.159 4.159 9 C -0.158 4.158 10 C -0.171 4.171 11 C 0.280 3.720 12 O -0.428 6.428 13 N -0.361 5.361 14 C 0.122 3.878 15 C -0.196 4.196 16 C 0.014 3.986 17 N -0.370 5.370 18 C -0.373 4.373 19 H 0.076 0.924 20 C -0.259 4.259 21 N -0.612 5.612 22 Si 0.793 3.207 23 H -0.219 1.219 24 H -0.215 1.215 25 H -0.201 1.201 26 C -0.184 4.184 27 C -0.211 4.211 28 C -0.182 4.182 29 H 0.072 0.928 30 H 0.095 0.905 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.118 0.882 34 H 0.053 0.947 35 H 0.098 0.902 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.106 0.894 39 H 0.078 0.922 40 H 0.108 0.892 41 H 0.085 0.915 42 H 0.106 0.894 43 H 0.242 0.758 44 H 0.109 0.891 45 H 0.089 0.911 46 H 0.067 0.933 47 H 0.029 0.971 48 H 0.044 0.956 49 H 0.211 0.789 50 H 0.060 0.940 51 H 0.114 0.886 52 H 0.110 0.890 53 H 0.099 0.901 54 H 0.125 0.875 55 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -10.041 -12.826 -9.447 18.830 hybrid contribution 0.495 1.536 0.903 1.849 sum -9.546 -11.290 -8.544 17.076 Atomic orbital electron populations 1.21693 0.93228 1.02898 1.02237 1.21623 0.98287 0.90567 1.03950 1.22323 0.89668 0.97862 0.88952 0.89976 1.87905 1.87891 1.19412 1.31739 1.23221 0.96260 0.80436 0.97660 1.22327 0.99376 0.96618 0.97129 1.22077 0.96928 0.95735 1.01153 1.22053 0.98902 0.95662 0.99155 1.22806 0.95172 0.97299 1.01821 1.21543 0.91771 0.76853 0.81794 1.90658 1.65546 1.44748 1.41877 1.45969 1.06813 1.62001 1.21280 1.19836 0.79515 0.92881 0.95523 1.21909 1.02678 1.01317 0.93688 1.21174 0.94919 0.90503 0.92041 1.42269 1.55442 1.07517 1.31758 1.19486 1.20963 0.88384 1.08453 0.92386 1.25347 1.00781 1.01720 0.98066 1.69763 1.37429 1.36184 1.17869 0.85289 0.77900 0.80958 0.76557 1.21850 1.21452 1.20083 1.22403 0.99757 0.95896 1.00367 1.23002 0.98543 1.04307 0.95255 1.23062 1.03087 0.91116 1.00982 0.92752 0.90456 0.92368 0.90975 0.88248 0.94729 0.90178 0.93844 0.92770 0.89403 0.92182 0.89179 0.91503 0.89405 0.75781 0.89139 0.91097 0.93280 0.97146 0.95618 0.78921 0.93999 0.88592 0.89030 0.90097 0.87465 0.87323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.76 71.98 0.70 -1.63 16 2 C -0.11 -2.10 5.06 30.60 0.15 -1.94 16 3 C 0.07 2.08 2.34 29.85 0.07 2.15 16 4 H 0.08 2.33 7.84 -2.39 -0.02 2.31 16 5 O -0.35 -10.99 9.00 -129.94 -1.17 -12.16 16 6 C 0.08 2.60 3.05 32.02 0.10 2.70 16 7 C -0.12 -3.52 6.54 31.67 0.21 -3.31 16 8 C -0.12 -2.99 6.80 31.32 0.21 -2.77 16 9 C -0.12 -2.66 6.80 31.32 0.21 -2.45 16 10 C -0.13 -3.22 6.57 31.80 0.21 -3.01 16 11 C 0.49 17.00 4.27 87.66 0.37 17.37 16 12 O -0.55 -23.80 12.54 16.00 0.20 -23.60 16 13 N -0.71 -21.44 4.06 -422.91 -1.72 -23.16 16 14 C 0.21 6.85 0.55 3.60 0.00 6.85 16 15 C -0.14 -3.93 8.19 71.98 0.59 -3.34 16 16 C 0.14 6.34 4.85 86.38 0.42 6.76 16 17 N -0.73 -38.08 5.18 -343.46 -1.78 -39.86 16 18 C -0.24 -14.20 9.99 84.03 0.84 -13.36 16 19 H 0.06 3.45 7.83 -2.91 -0.02 3.43 16 20 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16 21 N -0.96 -58.35 13.06 21.65 0.28 -58.07 16 22 Si 0.96 47.77 29.55 68.60 2.03 49.80 16 23 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 24 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 25 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 26 C -0.16 -4.75 4.86 -10.79 -0.05 -4.80 16 27 C -0.17 -4.69 8.48 30.62 0.26 -4.43 16 28 C -0.15 -3.01 9.68 30.62 0.30 -2.72 16 29 H 0.05 0.99 7.96 -2.38 -0.02 0.97 16 30 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 32 H 0.07 1.50 7.57 -2.39 -0.02 1.49 16 33 H 0.10 1.52 7.51 -2.39 -0.02 1.50 16 34 H 0.03 1.36 7.75 -2.39 -0.02 1.34 16 35 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 36 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 37 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 43 H 0.41 10.03 7.97 -92.72 -0.74 9.30 16 44 H 0.09 1.87 6.96 -2.39 -0.02 1.85 16 45 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 46 H 0.05 1.65 6.86 -2.38 -0.02 1.63 16 47 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 48 H 0.03 1.34 5.74 -2.39 -0.01 1.32 16 49 H 0.38 20.06 6.35 -92.70 -0.59 19.47 16 50 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 51 H 0.10 2.94 8.07 -2.39 -0.02 2.92 16 52 H 0.09 2.56 3.87 -2.39 -0.01 2.55 16 53 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 54 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 55 H 0.11 1.88 7.26 -2.39 -0.02 1.86 16 Total: -1.00 -72.90 419.83 2.45 -70.45 By element: Atomic # 1 Polarization: 48.43 SS G_CDS: -0.46 Total: 47.98 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: 5.06 Total: -11.37 kcal Atomic # 7 Polarization: -117.88 SS G_CDS: -3.21 Total: -121.09 kcal Atomic # 8 Polarization: -34.80 SS G_CDS: -0.97 Total: -35.77 kcal Atomic # 14 Polarization: 47.77 SS G_CDS: 2.03 Total: 49.80 kcal Total: -72.90 2.45 -70.45 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318717661.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.626 kcal (2) G-P(sol) polarization free energy of solvation -72.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.67 seconds