Wall clock time and date at job start Wed Apr 1 2020 00:10:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.53006 * 109.46774 * 2 1
4 4 H 1.08999 * 109.47131 * 304.99777 * 3 2 1
5 5 O 1.42899 * 109.46991 * 65.00668 * 3 2 1
6 6 C 1.42901 * 113.99715 * 269.99572 * 5 3 2
7 7 C 1.54267 * 110.48327 * 149.99999 * 6 5 3
8 8 C 1.53874 * 106.59616 * 142.29293 * 7 6 5
9 9 C 1.54266 * 106.64193 * 359.97125 * 8 7 6
10 10 C 1.54885 * 110.48604 * 264.77823 * 6 5 3
11 11 C 1.50705 * 109.46794 * 184.99972 * 3 2 1
12 12 O 1.21276 * 120.00549 * 245.00012 * 11 3 2
13 13 N 1.34780 * 119.99749 * 65.00371 * 11 3 2
14 14 C 1.46500 * 119.99924 * 175.56947 * 13 11 3
15 15 C 1.53004 * 109.47230 * 174.05557 * 14 13 11
16 16 C 1.53001 * 109.47104 * 54.06231 * 14 13 11
17 17 N 1.46505 * 109.47365 * 59.99410 * 16 14 13
18 18 C 1.36928 * 120.00072 * 180.02562 * 17 16 14
19 19 H 1.08002 * 120.00586 * 0.02562 * 18 17 16
20 20 C 1.38812 * 119.99940 * 180.02562 * 18 17 16
21 21 N 1.31616 * 120.00007 * 0.02562 * 20 18 17
22 22 Si 1.86800 * 120.00213 * 180.02562 * 20 18 17
23 23 H 1.48495 * 109.47337 * 60.00087 * 22 20 18
24 24 H 1.48503 * 109.47090 * 180.02562 * 22 20 18
25 25 H 1.48501 * 109.46917 * 299.99993 * 22 20 18
26 26 C 1.52994 * 109.47569 * 294.06087 * 14 13 11
27 27 C 1.52999 * 117.49787 * 2.15671 * 26 14 13
28 28 C 1.53002 * 117.49840 * 293.50168 * 26 14 13
29 29 H 1.09003 * 109.46774 * 179.97438 * 1 2 3
30 30 H 1.09004 * 109.47075 * 299.99273 * 1 2 3
31 31 H 1.08992 * 109.47404 * 59.99854 * 1 2 3
32 32 H 1.09004 * 109.47075 * 240.00727 * 2 1 3
33 33 H 1.08995 * 109.47896 * 120.00058 * 2 1 3
34 34 H 1.09007 * 110.53571 * 27.38988 * 6 5 3
35 35 H 1.08991 * 110.03360 * 23.00713 * 7 6 5
36 36 H 1.09004 * 110.06958 * 261.59328 * 7 6 5
37 37 H 1.08999 * 110.03427 * 119.28319 * 8 7 6
38 38 H 1.09006 * 110.03153 * 240.66871 * 8 7 6
39 39 H 1.08999 * 110.48722 * 95.09382 * 9 8 7
40 40 H 1.08998 * 110.48955 * 217.74168 * 9 8 7
41 41 H 1.08997 * 110.75442 * 321.69024 * 10 6 5
42 42 H 1.08996 * 110.75925 * 84.87951 * 10 6 5
43 43 H 0.97000 * 120.00307 * 355.57563 * 13 11 3
44 44 H 1.09005 * 109.46782 * 60.00453 * 15 14 13
45 45 H 1.08998 * 109.47173 * 180.02562 * 15 14 13
46 46 H 1.08992 * 109.47568 * 300.00629 * 15 14 13
47 47 H 1.08998 * 109.47722 * 179.97438 * 16 14 13
48 48 H 1.09009 * 109.47116 * 299.99830 * 16 14 13
49 49 H 0.96998 * 119.99217 * 0.02562 * 17 16 14
50 50 H 0.97007 * 120.00003 * 179.97438 * 21 20 18
51 51 H 1.08998 * 115.55117 * 147.82698 * 26 14 13
52 52 H 1.09002 * 117.49919 * 359.97438 * 27 26 14
53 53 H 1.09003 * 117.49903 * 145.02006 * 27 26 14
54 54 H 1.09003 * 117.50024 * 214.98126 * 28 26 14
55 55 H 1.08995 * 117.49738 * 359.97438 * 28 26 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 1 1.6053 1.9816 -0.8418
5 8 1.6619 2.0814 1.2211
6 6 0.3927 2.7356 1.1661
7 6 -0.2773 2.7317 2.5557
8 6 -0.9882 4.0882 2.7047
9 6 -0.7253 4.8703 1.4012
10 6 0.5711 4.2380 0.8346
11 6 3.5419 1.4444 -0.1238
12 8 4.2250 1.8611 0.7874
13 7 4.1259 0.9829 -1.2474
14 6 5.5792 1.0739 -1.4080
15 6 5.9968 0.3524 -2.6910
16 6 6.2669 0.4194 -0.2081
17 7 5.8716 -0.9890 -0.1271
18 6 6.3649 -1.7820 0.8743
19 1 7.0450 -1.3693 1.6047
20 6 5.9908 -3.1166 0.9507
21 7 5.1624 -3.6199 0.0604
22 14 6.6631 -4.1983 2.3172
23 1 6.2646 -3.6382 3.6335
24 1 6.1151 -5.5714 2.1766
25 1 8.1447 -4.2456 2.2275
26 6 5.9920 2.5447 -1.4925
27 6 4.8905 3.5968 -1.3496
28 6 5.5302 3.3388 -2.7161
29 1 -0.3633 -1.0277 -0.0005
30 1 -0.3633 0.5137 0.8901
31 1 -0.3634 0.5138 -0.8899
32 1 1.8933 -0.5137 -0.8901
33 1 1.8934 -0.5138 0.8899
34 1 -0.2529 2.2565 0.4299
35 1 0.4774 2.6182 3.3338
36 1 -1.0032 1.9209 2.6187
37 1 -2.0590 3.9359 2.8392
38 1 -0.5789 4.6327 3.5557
39 1 -1.5515 4.7365 0.7029
40 1 -0.5728 5.9281 1.6151
41 1 1.4493 4.6428 1.3375
42 1 0.6401 4.3904 -0.2425
43 1 3.5840 0.5906 -1.9498
44 1 5.5069 0.8187 -3.5459
45 1 7.0781 0.4197 -2.8102
46 1 5.7028 -0.6954 -2.6308
47 1 7.3482 0.4866 -0.3277
48 1 5.9694 0.9333 0.7060
49 1 5.2605 -1.3596 -0.7828
50 1 4.9012 -4.5526 0.1136
51 1 6.9719 2.7825 -1.0786
52 1 3.8717 3.2412 -1.1958
53 1 5.1458 4.5271 -0.8421
54 1 6.2062 4.0993 -3.1070
55 1 4.9327 2.8133 -3.4609
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001318717664.mol2 55
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 00:10:18
Heat of formation + Delta-G solvation = -67.726000 kcal
Electronic energy + Delta-G solvation = -32293.612647 eV
Core-core repulsion = 28330.858142 eV
Total energy + Delta-G solvation = -3962.754505 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 338.236 amu
Computer time = 1.27 seconds
Orbital eigenvalues (eV)
-41.74425 -40.16091 -38.44125 -37.03139 -36.56762 -35.00754 -34.09476 -32.96586
-31.23260 -29.73254 -29.27802 -27.68203 -27.25948 -25.50354 -23.42709 -23.02949
-22.89421 -21.79571 -21.62125 -21.19990 -20.28304 -19.26573 -18.39569 -18.20775
-17.07237 -16.89868 -16.47297 -16.27330 -16.18060 -15.82683 -15.35506 -15.19499
-15.02390 -14.80754 -14.58783 -14.46428 -14.21935 -13.60945 -13.52163 -13.47879
-13.30955 -13.15686 -13.01591 -12.96652 -12.88525 -12.78342 -12.41137 -12.28407
-12.23649 -12.15670 -12.06840 -12.00291 -11.95954 -11.90433 -11.76053 -11.35393
-11.32339 -11.19445 -11.04381 -10.91970 -10.52352 -10.12049 -9.89933 -8.88396
-7.94009 -5.18581 1.42515 1.45664 1.51454 1.75333 1.99326 2.54956
2.89662 3.00952 3.38768 3.63076 3.66423 3.67530 3.77468 3.85884
3.93845 3.99902 4.01796 4.04262 4.19567 4.23935 4.34068 4.38299
4.38947 4.49374 4.51269 4.58523 4.59336 4.66997 4.74277 4.80474
4.81992 4.89168 4.91972 4.92742 4.98202 5.04113 5.07321 5.08693
5.14535 5.20243 5.21725 5.22117 5.28678 5.30951 5.33077 5.35008
5.38368 5.46684 5.47344 5.76685 6.28200 6.29367 6.74350 7.36348
7.47148 8.11814 8.41482 9.28581
Molecular weight = 338.24amu
Principal moments of inertia in cm(-1)
A = 0.009845 B = 0.004025 C = 0.003201
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2843.350596 B = 6954.924595 C = 8745.178178
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.138 4.138
3 C 0.083 3.917
4 H 0.114 0.886
5 O -0.375 6.375
6 C 0.066 3.934
7 C -0.127 4.127
8 C -0.119 4.119
9 C -0.116 4.116
10 C -0.148 4.148
11 C 0.517 3.483
12 O -0.551 6.551
13 N -0.705 5.705
14 C 0.210 3.790
15 C -0.138 4.138
16 C 0.139 3.861
17 N -0.726 5.726
18 C -0.243 4.243
19 H 0.057 0.943
20 C -0.066 4.066
21 N -0.960 5.960
22 Si 0.964 3.036
23 H -0.289 1.289
24 H -0.288 1.288
25 H -0.279 1.279
26 C -0.167 4.167
27 C -0.171 4.171
28 C -0.144 4.144
29 H 0.062 0.938
30 H 0.061 0.939
31 H 0.083 0.917
32 H 0.081 0.919
33 H 0.035 0.965
34 H 0.096 0.904
35 H 0.050 0.950
36 H 0.078 0.922
37 H 0.083 0.917
38 H 0.061 0.939
39 H 0.085 0.915
40 H 0.074 0.926
41 H 0.052 0.948
42 H 0.077 0.923
43 H 0.407 0.593
44 H 0.091 0.909
45 H 0.071 0.929
46 H 0.049 0.951
47 H 0.012 0.988
48 H 0.027 0.973
49 H 0.378 0.622
50 H 0.251 0.749
51 H 0.098 0.902
52 H 0.084 0.916
53 H 0.083 0.917
54 H 0.109 0.891
55 H 0.109 0.891
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.447 17.462 -8.204 24.103
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.176 4.176
3 C 0.022 3.978
4 H 0.131 0.869
5 O -0.293 6.293
6 C 0.009 3.991
7 C -0.165 4.165
8 C -0.157 4.157
9 C -0.153 4.153
10 C -0.186 4.186
11 C 0.304 3.696
12 O -0.428 6.428
13 N -0.359 5.359
14 C 0.124 3.876
15 C -0.196 4.196
16 C 0.011 3.989
17 N -0.369 5.369
18 C -0.376 4.376
19 H 0.075 0.925
20 C -0.259 4.259
21 N -0.611 5.611
22 Si 0.794 3.206
23 H -0.216 1.216
24 H -0.214 1.214
25 H -0.205 1.205
26 C -0.186 4.186
27 C -0.209 4.209
28 C -0.180 4.180
29 H 0.081 0.919
30 H 0.080 0.920
31 H 0.101 0.899
32 H 0.100 0.900
33 H 0.054 0.946
34 H 0.114 0.886
35 H 0.069 0.931
36 H 0.097 0.903
37 H 0.102 0.898
38 H 0.080 0.920
39 H 0.103 0.897
40 H 0.093 0.907
41 H 0.071 0.929
42 H 0.096 0.904
43 H 0.244 0.756
44 H 0.109 0.891
45 H 0.090 0.910
46 H 0.068 0.932
47 H 0.029 0.971
48 H 0.045 0.955
49 H 0.211 0.789
50 H 0.060 0.940
51 H 0.116 0.884
52 H 0.102 0.898
53 H 0.102 0.898
54 H 0.127 0.873
55 H 0.127 0.873
Dipole moment (debyes) X Y Z Total
from point charges -13.741 17.736 -7.223 23.570
hybrid contribution 0.387 -1.384 0.765 1.628
sum -13.354 16.351 -6.458 22.078
Atomic orbital electron populations
1.21900 0.92695 1.03046 1.02947 1.21938 0.98715 0.94490 1.02457
1.22000 0.91011 0.95125 0.89667 0.86861 1.88107 1.37514 1.70910
1.32810 1.23553 0.84172 0.92500 0.98845 1.22236 0.99089 0.99206
0.95971 1.22083 1.00965 0.94242 0.98360 1.22278 0.96660 0.99569
0.96823 1.23009 0.98870 0.95260 1.01429 1.20612 0.90416 0.76737
0.81843 1.90650 1.65418 1.47099 1.39599 1.45833 1.07551 1.62694
1.19852 1.19849 0.79344 0.93125 0.95307 1.21917 1.02774 0.99763
0.95134 1.21220 0.95298 0.84890 0.97478 1.42235 1.55854 1.05765
1.33053 1.19461 1.20962 0.91987 1.05150 0.92457 1.25339 1.01081
0.98085 1.01354 1.69756 1.39316 1.13740 1.38239 0.85356 0.78069
0.78025 0.79182 1.21570 1.21368 1.20480 1.22446 0.99469 0.91404
1.05316 1.22883 0.97563 0.99271 1.01134 1.23069 1.02873 1.01838
0.90257 0.91874 0.92027 0.89865 0.90000 0.94594 0.88604 0.93091
0.90337 0.89795 0.91984 0.89686 0.90706 0.92889 0.90436 0.75648
0.89055 0.90964 0.93241 0.97062 0.95513 0.78866 0.94040 0.88422
0.89811 0.89809 0.87283 0.87272
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.04 8.59 71.98 0.62 -2.42 16
2 C -0.14 -3.95 5.61 30.60 0.17 -3.78 16
3 C 0.08 2.36 2.67 29.85 0.08 2.44 16
4 H 0.11 2.30 7.79 -2.39 -0.02 2.28 16
5 O -0.37 -11.90 9.17 -129.99 -1.19 -13.09 16
6 C 0.07 1.46 1.99 31.67 0.06 1.52 16
7 C -0.13 -2.66 6.44 31.32 0.20 -2.46 16
8 C -0.12 -1.85 6.80 31.32 0.21 -1.63 16
9 C -0.12 -1.63 6.84 31.70 0.22 -1.41 16
10 C -0.15 -2.86 6.62 31.91 0.21 -2.65 16
11 C 0.52 18.44 4.21 87.66 0.37 18.81 16
12 O -0.55 -25.20 12.84 15.97 0.21 -24.99 16
13 N -0.71 -21.69 4.10 -422.92 -1.73 -23.42 16
14 C 0.21 6.95 0.55 3.60 0.00 6.96 16
15 C -0.14 -3.93 8.18 71.98 0.59 -3.34 16
16 C 0.14 6.34 4.81 86.38 0.42 6.75 16
17 N -0.73 -38.72 5.18 -343.44 -1.78 -40.50 16
18 C -0.24 -14.64 9.99 84.03 0.84 -13.80 16
19 H 0.06 3.47 7.83 -2.91 -0.02 3.45 16
20 C -0.07 -3.93 5.50 84.86 0.47 -3.47 16
21 N -0.96 -58.84 13.06 21.65 0.28 -58.56 16
22 Si 0.96 48.62 29.55 68.60 2.03 50.64 16
23 H -0.29 -14.53 7.11 99.48 0.71 -13.83 16
24 H -0.29 -14.22 7.11 99.48 0.71 -13.52 16
25 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16
26 C -0.17 -4.80 4.89 -10.80 -0.05 -4.85 16
27 C -0.17 -4.55 8.62 30.62 0.26 -4.28 16
28 C -0.14 -2.91 9.68 30.62 0.30 -2.61 16
29 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16
30 H 0.06 1.25 5.61 -2.38 -0.01 1.24 16
31 H 0.08 1.19 8.01 -2.39 -0.02 1.17 16
32 H 0.08 2.24 7.65 -2.38 -0.02 2.23 16
33 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16
34 H 0.10 1.66 5.44 -2.38 -0.01 1.65 16
35 H 0.05 1.34 8.07 -2.39 -0.02 1.32 16
36 H 0.08 1.43 7.90 -2.38 -0.02 1.41 16
37 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16
38 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16
39 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16
40 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16
41 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16
42 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16
43 H 0.41 10.03 8.05 -92.71 -0.75 9.28 16
44 H 0.09 1.87 6.91 -2.38 -0.02 1.85 16
45 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16
46 H 0.05 1.66 6.86 -2.39 -0.02 1.65 16
47 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16
48 H 0.03 1.43 5.63 -2.38 -0.01 1.41 16
49 H 0.38 20.32 6.35 -92.71 -0.59 19.73 16
50 H 0.25 14.92 8.31 -92.70 -0.77 14.15 16
51 H 0.10 2.98 8.06 -2.39 -0.02 2.96 16
52 H 0.08 2.33 5.21 -2.39 -0.01 2.32 16
53 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16
54 H 0.11 1.82 8.14 -2.39 -0.02 1.81 16
55 H 0.11 1.84 7.20 -2.39 -0.02 1.83 16
Total: -1.00 -77.29 415.79 2.32 -74.96
By element:
Atomic # 1 Polarization: 45.64 SS G_CDS: -0.46 Total: 45.19 kcal
Atomic # 6 Polarization: -15.19 SS G_CDS: 4.96 Total: -10.23 kcal
Atomic # 7 Polarization: -119.25 SS G_CDS: -3.23 Total: -122.48 kcal
Atomic # 8 Polarization: -37.10 SS G_CDS: -0.99 Total: -38.09 kcal
Atomic # 14 Polarization: 48.62 SS G_CDS: 2.03 Total: 50.64 kcal
Total: -77.29 2.32 -74.96 kcal
The number of atoms in the molecule is 55
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001318717664.mol2 55
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 7.237 kcal
(2) G-P(sol) polarization free energy of solvation -77.285 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.048 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.322 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.963 kcal
(6) G-S(sol) free energy of system = (1) + (5) -67.726 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.27 seconds