Wall clock time and date at job start Tue Mar 31 2020 22:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46846 * 2 1 4 4 H 1.08992 * 110.67508 * 52.03708 * 3 2 1 5 5 O 1.44378 * 110.61708 * 289.06972 * 3 2 1 6 6 C 1.43752 * 106.97259 * 201.44322 * 5 3 2 7 7 C 1.54093 * 107.29445 * 26.51397 * 6 5 3 8 8 C 1.54816 * 104.18954 * 357.96976 * 7 6 5 9 9 H 1.09000 * 110.90268 * 97.35133 * 8 7 6 10 10 C 1.50693 * 110.90663 * 220.92208 * 8 7 6 11 11 O 1.21281 * 120.00095 * 118.54864 * 10 8 7 12 12 N 1.34780 * 120.00182 * 298.54525 * 10 8 7 13 13 C 1.46500 * 119.99910 * 180.02562 * 12 10 8 14 14 H 1.09002 * 109.47129 * 324.99754 * 13 12 10 15 15 C 1.52999 * 109.46944 * 205.00356 * 13 12 10 16 16 N 1.46492 * 109.47631 * 54.99476 * 15 13 12 17 17 C 1.36938 * 120.00241 * 180.02562 * 16 15 13 18 18 H 1.07999 * 120.00320 * 0.02562 * 17 16 15 19 19 C 1.38819 * 119.99938 * 180.02562 * 17 16 15 20 20 N 1.31622 * 119.99924 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00022 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.47358 * 59.99767 * 21 19 17 23 23 H 1.48496 * 109.47154 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.46851 * 300.00017 * 21 19 17 25 25 C 1.52997 * 109.47473 * 85.00011 * 13 12 10 26 26 C 1.53000 * 109.47060 * 180.02562 * 25 13 12 27 27 C 1.53001 * 109.46886 * 180.02562 * 26 25 13 28 28 C 1.53002 * 109.46963 * 299.99499 * 27 26 25 29 29 C 1.52997 * 109.47092 * 60.00194 * 28 27 26 30 30 C 1.53002 * 109.46817 * 299.99988 * 25 13 12 31 31 H 1.09001 * 109.47144 * 59.99854 * 1 2 3 32 32 H 1.08998 * 109.46990 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47283 * 300.00282 * 1 2 3 34 34 H 1.08996 * 109.47098 * 240.00221 * 2 1 3 35 35 H 1.08991 * 109.47189 * 120.00063 * 2 1 3 36 36 H 1.09006 * 109.87126 * 267.08811 * 6 5 3 37 37 H 1.08992 * 110.00599 * 146.01247 * 6 5 3 38 38 H 1.09003 * 110.48699 * 239.29610 * 7 6 5 39 39 H 1.08998 * 110.60170 * 116.70785 * 7 6 5 40 40 H 0.96994 * 120.00115 * 0.02562 * 12 10 8 41 41 H 1.09001 * 109.47317 * 175.00198 * 15 13 12 42 42 H 1.09006 * 109.47194 * 294.99834 * 15 13 12 43 43 H 0.97006 * 119.99812 * 0.02562 * 16 15 13 44 44 H 0.97002 * 119.99936 * 179.97438 * 20 19 17 45 45 H 1.09002 * 109.47153 * 59.99757 * 25 13 12 46 46 H 1.09001 * 109.47194 * 299.99650 * 26 25 13 47 47 H 1.08992 * 109.47399 * 59.99823 * 26 25 13 48 48 H 1.09000 * 109.47437 * 180.02562 * 27 26 25 49 49 H 1.09002 * 109.47508 * 59.99571 * 27 26 25 50 50 H 1.09002 * 109.47067 * 300.00341 * 28 27 26 51 51 H 1.09000 * 109.47312 * 180.02562 * 28 27 26 52 52 H 1.09001 * 109.47375 * 180.02562 * 29 28 27 53 53 H 1.09002 * 109.47497 * 59.99850 * 29 28 27 54 54 H 1.09002 * 109.47075 * 299.99262 * 30 25 13 55 55 H 1.08996 * 109.47407 * 60.00219 * 30 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5768 2.0144 0.8040 5 8 1.7931 2.0690 -1.2772 6 6 2.7073 3.1730 -1.3867 7 6 3.9333 2.8409 -0.5142 8 6 3.5844 1.4753 0.1264 9 1 4.0384 0.6566 -0.4318 10 6 4.0066 1.4363 1.5725 11 8 3.1763 1.2796 2.4426 12 7 5.3068 1.5753 1.8990 13 6 5.7172 1.5368 3.3048 14 1 4.9457 1.9981 3.9213 15 6 7.0308 2.3029 3.4737 16 7 6.8751 3.6612 2.9477 17 6 7.9269 4.5370 2.9908 18 1 8.8715 4.2262 3.4123 19 6 7.7792 5.8243 2.4928 20 7 6.6282 6.2029 1.9786 21 14 9.2142 7.0187 2.5509 22 1 10.3527 6.4628 1.7763 23 1 8.8012 8.3177 1.9617 24 1 9.6294 7.2252 3.9617 25 6 5.9153 0.0830 3.7386 26 6 6.3433 0.0428 5.2070 27 6 6.5419 -1.4109 5.6407 28 6 5.2288 -2.1776 5.4711 29 6 4.8007 -2.1374 4.0028 30 6 4.6017 -0.6830 3.5697 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 2.2317 4.0851 -1.0260 37 1 3.0147 3.3010 -2.4245 38 1 4.0702 3.5998 0.2561 39 1 4.8296 2.7562 -1.1286 40 1 5.9708 1.7009 1.2032 41 1 7.2903 2.3504 4.5313 42 1 7.8231 1.7906 2.9279 43 1 6.0268 3.9403 2.5687 44 1 6.5249 7.1026 1.6309 45 1 6.6868 -0.3783 3.1221 46 1 7.2790 0.5887 5.3278 47 1 5.5715 0.5040 5.8232 48 1 6.8464 -1.4397 6.6869 49 1 7.3139 -1.8717 5.0244 50 1 4.4568 -1.7168 6.0874 51 1 5.3701 -3.2132 5.7804 52 1 3.8650 -2.6832 3.8820 53 1 5.5727 -2.5982 3.3864 54 1 3.8302 -0.2218 4.1863 55 1 4.2963 -0.6544 2.5237 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319658521.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:49 Heat of formation + Delta-G solvation = -125.545712 kcal Electronic energy + Delta-G solvation = -31922.069866 eV Core-core repulsion = 27956.808110 eV Total energy + Delta-G solvation = -3965.261756 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 2.85 seconds Orbital eigenvalues (eV) -41.73155 -40.30526 -38.88594 -37.18159 -35.34659 -34.48945 -33.78328 -32.74795 -31.95345 -31.46063 -29.41315 -28.53194 -25.83598 -24.92787 -23.84955 -23.35460 -22.96543 -22.11405 -21.49677 -21.17629 -20.55195 -19.26580 -18.39963 -17.37902 -17.25661 -16.85912 -16.54379 -16.35773 -15.96707 -15.44741 -15.33065 -15.18566 -14.96692 -14.81372 -14.61803 -14.56105 -14.44460 -14.34817 -13.98789 -13.77388 -13.29689 -13.20005 -13.12563 -12.85873 -12.82850 -12.66926 -12.58324 -12.42837 -12.37683 -12.11766 -11.96865 -11.88704 -11.80649 -11.77730 -11.76639 -11.59832 -11.38417 -11.13118 -10.96413 -10.85138 -10.74336 -10.56928 -9.85008 -8.99330 -7.93404 -5.22370 1.48510 1.50328 1.56337 1.65276 2.20092 2.56312 2.81799 3.40628 3.48981 3.57394 3.60030 3.74777 3.85943 3.89252 4.03764 4.10273 4.14301 4.18196 4.23436 4.26218 4.30400 4.42428 4.48518 4.51595 4.53566 4.60630 4.66984 4.69701 4.74250 4.78911 4.80045 4.81375 4.89663 4.92925 5.00716 5.03239 5.03903 5.09620 5.16893 5.21775 5.23160 5.30882 5.32548 5.36154 5.40359 5.43713 5.48012 5.52553 5.60354 5.70171 5.87814 6.27014 6.60563 7.28852 7.34976 8.08130 8.32591 9.29016 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.007153 B = 0.004735 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3913.249071 B = 5911.563689 C = 9512.835262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.108 4.108 3 C 0.099 3.901 4 H 0.056 0.944 5 O -0.381 6.381 6 C 0.049 3.951 7 C -0.143 4.143 8 C -0.134 4.134 9 H 0.133 0.867 10 C 0.526 3.474 11 O -0.565 6.565 12 N -0.704 5.704 13 C 0.154 3.846 14 H 0.054 0.946 15 C 0.147 3.853 16 N -0.741 5.741 17 C -0.245 4.245 18 H 0.076 0.924 19 C -0.068 4.068 20 N -0.964 5.964 21 Si 0.969 3.031 22 H -0.276 1.276 23 H -0.298 1.298 24 H -0.282 1.282 25 C -0.081 4.081 26 C -0.115 4.115 27 C -0.112 4.112 28 C -0.117 4.117 29 C -0.115 4.115 30 C -0.095 4.095 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.044 0.956 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.053 0.947 37 H 0.108 0.892 38 H 0.058 0.942 39 H 0.102 0.898 40 H 0.407 0.593 41 H 0.037 0.963 42 H 0.036 0.964 43 H 0.374 0.626 44 H 0.250 0.750 45 H 0.080 0.920 46 H 0.066 0.934 47 H 0.050 0.950 48 H 0.069 0.931 49 H 0.069 0.931 50 H 0.052 0.948 51 H 0.074 0.926 52 H 0.061 0.939 53 H 0.067 0.933 54 H 0.043 0.957 55 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.022 -18.256 -2.598 19.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.146 4.146 3 C 0.041 3.959 4 H 0.074 0.926 5 O -0.301 6.301 6 C -0.028 4.028 7 C -0.181 4.181 8 C -0.155 4.155 9 H 0.151 0.849 10 C 0.313 3.687 11 O -0.444 6.444 12 N -0.354 5.354 13 C 0.049 3.951 14 H 0.073 0.927 15 C 0.020 3.980 16 N -0.384 5.384 17 C -0.377 4.377 18 H 0.094 0.906 19 C -0.261 4.261 20 N -0.615 5.615 21 Si 0.798 3.202 22 H -0.202 1.202 23 H -0.225 1.225 24 H -0.209 1.209 25 C -0.101 4.101 26 C -0.153 4.153 27 C -0.149 4.149 28 C -0.155 4.155 29 C -0.153 4.153 30 C -0.133 4.133 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.064 0.936 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.072 0.928 37 H 0.126 0.874 38 H 0.077 0.923 39 H 0.121 0.879 40 H 0.242 0.758 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.206 0.794 44 H 0.058 0.942 45 H 0.098 0.902 46 H 0.084 0.916 47 H 0.069 0.931 48 H 0.088 0.912 49 H 0.087 0.913 50 H 0.070 0.930 51 H 0.092 0.908 52 H 0.079 0.921 53 H 0.085 0.915 54 H 0.062 0.938 55 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.582 -18.369 -2.085 19.311 hybrid contribution 0.771 1.761 -0.102 1.925 sum -4.812 -16.608 -2.187 17.428 Atomic orbital electron populations 1.21682 0.94746 1.02325 1.01536 1.21497 0.97251 0.92851 1.02969 1.22928 0.91615 0.95664 0.85658 0.92634 1.88840 1.59136 1.45458 1.36638 1.23193 0.88472 0.89535 1.01582 1.22880 1.00471 0.95032 0.99732 1.22913 0.98491 1.00979 0.93114 0.84936 1.20391 0.82273 0.75195 0.90851 1.90680 1.51968 1.50496 1.51278 1.45907 1.08157 1.72526 1.08821 1.21093 0.95783 0.96067 0.82168 0.92743 1.21123 0.94620 0.84842 0.97379 1.42491 1.13101 1.09490 1.73319 1.19558 0.92840 0.93010 1.32263 0.90572 1.25466 0.99289 0.99251 1.02063 1.69806 1.25215 1.18884 1.47569 0.85291 0.79149 0.78142 0.77610 1.20186 1.22479 1.20853 1.21433 0.98372 0.93005 0.97281 1.21601 1.01147 0.97915 0.94638 1.21490 0.97734 0.94164 1.01538 1.21532 0.97238 1.00533 0.96193 1.21550 1.01250 0.95694 0.96785 1.21483 0.95958 0.95347 1.00463 0.92617 0.91073 0.93641 0.90057 0.90679 0.92848 0.87354 0.92344 0.87949 0.75757 0.94564 0.94588 0.79365 0.94161 0.90172 0.91568 0.93145 0.91207 0.91260 0.92960 0.90772 0.92057 0.91475 0.93792 0.93239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 9.86 71.98 0.71 -2.31 16 2 C -0.11 -2.42 5.69 30.60 0.17 -2.24 16 3 C 0.10 2.66 2.34 31.28 0.07 2.73 16 4 H 0.06 1.79 7.53 -2.39 -0.02 1.77 16 5 O -0.38 -10.29 11.08 -148.98 -1.65 -11.95 16 6 C 0.05 1.21 7.70 72.35 0.56 1.77 16 7 C -0.14 -3.78 6.55 31.58 0.21 -3.57 16 8 C -0.13 -3.39 2.95 -10.24 -0.03 -3.42 16 9 H 0.13 2.68 8.06 -2.39 -0.02 2.66 16 10 C 0.53 16.15 5.40 87.65 0.47 16.62 16 11 O -0.56 -20.40 12.83 -3.03 -0.04 -20.44 16 12 N -0.70 -21.27 4.36 -442.54 -1.93 -23.20 16 13 C 0.15 4.97 1.99 44.99 0.09 5.06 16 14 H 0.05 2.12 7.58 -2.39 -0.02 2.10 16 15 C 0.15 5.45 5.31 86.38 0.46 5.91 16 16 N -0.74 -35.64 5.43 -343.46 -1.87 -37.50 16 17 C -0.25 -13.08 9.99 84.03 0.84 -12.24 16 18 H 0.08 3.89 7.83 -2.91 -0.02 3.86 16 19 C -0.07 -3.77 5.50 84.86 0.47 -3.30 16 20 N -0.96 -57.12 13.06 21.65 0.28 -56.84 16 21 Si 0.97 44.85 29.55 68.60 2.03 46.88 16 22 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 23 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 24 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 25 C -0.08 -2.08 1.96 -10.79 -0.02 -2.10 16 26 C -0.11 -2.75 4.85 30.59 0.15 -2.60 16 27 C -0.11 -2.10 5.92 30.60 0.18 -1.92 16 28 C -0.12 -2.16 5.92 30.59 0.18 -1.98 16 29 C -0.12 -2.31 5.93 30.61 0.18 -2.13 16 30 C -0.09 -2.44 3.73 30.61 0.11 -2.32 16 31 H 0.05 1.18 8.06 -2.39 -0.02 1.16 16 32 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.07 1.75 8.04 -2.39 -0.02 1.73 16 36 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 37 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.06 1.95 7.85 -2.39 -0.02 1.93 16 39 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 40 H 0.41 11.68 8.60 -92.71 -0.80 10.88 16 41 H 0.04 1.36 6.71 -2.39 -0.02 1.35 16 42 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 43 H 0.37 19.54 7.33 -92.70 -0.68 18.86 16 44 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 45 H 0.08 1.90 8.14 -2.39 -0.02 1.89 16 46 H 0.07 1.62 6.55 -2.39 -0.02 1.60 16 47 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 48 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 49 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 50 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 51 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 52 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 53 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 54 H 0.04 1.36 7.53 -2.39 -0.02 1.34 16 55 H 0.05 1.35 5.78 -2.39 -0.01 1.34 16 Total: -1.00 -63.85 417.11 1.01 -62.84 By element: Atomic # 1 Polarization: 48.88 SS G_CDS: -0.62 Total: 48.26 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: 4.80 Total: -8.05 kcal Atomic # 7 Polarization: -114.03 SS G_CDS: -3.51 Total: -117.54 kcal Atomic # 8 Polarization: -30.70 SS G_CDS: -1.69 Total: -32.39 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -63.85 1.01 -62.84 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319658521.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.707 kcal (2) G-P(sol) polarization free energy of solvation -63.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.85 seconds