Wall clock time and date at job start Tue Mar 31 2020 22:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47136 * 2 1 4 4 H 1.08994 * 109.49519 * 54.96581 * 3 2 1 5 5 C 1.53087 * 109.48416 * 175.00413 * 3 2 1 6 6 C 1.53179 * 109.16769 * 177.58911 * 5 3 2 7 7 H 1.08999 * 109.54006 * 183.06115 * 6 5 3 8 8 C 1.50703 * 109.53979 * 62.88275 * 6 5 3 9 9 O 1.21276 * 119.99975 * 0.18184 * 8 6 5 10 10 N 1.34771 * 119.99457 * 179.90123 * 8 6 5 11 11 C 1.46507 * 120.00096 * 179.97438 * 10 8 6 12 12 C 1.53000 * 109.47459 * 180.02562 * 11 10 8 13 13 C 1.52999 * 109.45968 * 60.03016 * 12 11 10 14 14 C 1.53035 * 109.45736 * 300.06911 * 12 11 10 15 15 C 1.53192 * 109.31203 * 178.61482 * 14 12 11 16 16 N 1.46918 * 108.77575 * 54.63552 * 15 14 12 17 17 C 1.36941 * 120.63093 * 126.41538 * 16 15 14 18 18 H 1.08004 * 120.00057 * 207.66303 * 17 16 15 19 19 C 1.38809 * 120.00035 * 27.66582 * 17 16 15 20 20 N 1.31614 * 120.00001 * 17.36578 * 19 17 16 21 21 Si 1.86801 * 119.99739 * 197.37047 * 19 17 16 22 22 H 1.48497 * 109.47444 * 89.99745 * 21 19 17 23 23 H 1.48502 * 109.46694 * 209.99892 * 21 19 17 24 24 H 1.48500 * 109.47162 * 329.99414 * 21 19 17 25 25 C 1.46925 * 118.73781 * 306.39435 * 16 15 14 26 26 C 1.53040 * 109.45967 * 180.02562 * 12 11 10 27 27 C 1.53176 * 109.10646 * 302.97169 * 6 5 3 28 28 C 1.53284 * 109.06471 * 56.94131 * 27 6 5 29 29 O 1.42907 * 109.47575 * 294.94122 * 3 2 1 30 30 H 1.09005 * 109.47283 * 300.00016 * 1 2 3 31 31 H 1.08991 * 109.47505 * 60.00269 * 1 2 3 32 32 H 1.09006 * 109.47027 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47315 * 239.99888 * 2 1 3 34 34 H 1.08995 * 109.47166 * 120.00101 * 2 1 3 35 35 H 1.09003 * 109.52104 * 57.67839 * 5 3 2 36 36 H 1.09004 * 109.57436 * 297.52812 * 5 3 2 37 37 H 0.97003 * 120.00520 * 0.02562 * 10 8 6 38 38 H 1.08999 * 109.46879 * 300.00438 * 11 10 8 39 39 H 1.09000 * 109.46586 * 59.99902 * 11 10 8 40 40 H 1.08995 * 109.47038 * 59.99634 * 13 12 11 41 41 H 1.08993 * 109.46908 * 180.02562 * 13 12 11 42 42 H 1.09004 * 109.46818 * 299.99943 * 13 12 11 43 43 H 1.09000 * 109.50463 * 298.56653 * 14 12 11 44 44 H 1.09004 * 109.50059 * 58.66883 * 14 12 11 45 45 H 1.09004 * 109.58548 * 294.85041 * 15 14 12 46 46 H 1.09004 * 109.59114 * 174.42832 * 15 14 12 47 47 H 0.97006 * 120.00125 * 180.02562 * 20 19 17 48 48 H 1.09004 * 109.58871 * 293.81791 * 25 16 15 49 49 H 1.09001 * 109.70454 * 173.46581 * 25 16 15 50 50 H 1.09002 * 109.49194 * 301.33405 * 26 12 11 51 51 H 1.08993 * 109.49875 * 61.39506 * 26 12 11 52 52 H 1.08997 * 109.52102 * 176.92828 * 27 6 5 53 53 H 1.08994 * 109.52703 * 297.12014 * 27 6 5 54 54 H 1.08997 * 109.45799 * 182.44672 * 28 27 6 55 55 H 1.09007 * 109.46658 * 62.44419 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6051 1.9820 0.8413 5 6 3.5657 1.4447 0.1257 6 6 4.0733 2.8886 0.0643 7 1 5.1628 2.8938 0.0986 8 6 3.5282 3.6647 1.2355 9 8 2.8074 3.1175 2.0429 10 7 3.8465 4.9653 1.3887 11 6 3.3162 5.7201 2.5270 12 6 3.8258 7.1614 2.4652 13 6 3.3593 7.8114 1.1610 14 6 5.3552 7.1640 2.5174 15 6 5.8630 8.6061 2.4204 16 7 5.2219 9.4049 3.4737 17 6 5.9765 10.1402 4.3486 18 1 5.6026 10.3502 5.3398 19 6 7.2218 10.6156 3.9614 20 7 7.5388 10.6671 2.6850 21 14 8.4478 11.1819 5.2519 22 1 9.2919 10.0341 5.6703 23 1 9.3097 12.2483 4.6815 24 1 7.7165 11.7139 6.4298 25 6 3.7558 9.4004 3.5702 26 6 3.2722 7.9493 3.6546 27 6 3.5987 3.5319 -1.2422 28 6 2.0699 3.4479 -1.3152 29 8 1.6632 2.0811 -1.2217 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5137 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8899 35 1 3.9994 0.8709 -0.6934 36 1 3.8544 0.9971 1.0768 37 1 4.4260 5.4020 0.7450 38 1 2.2269 5.7182 2.4883 39 1 3.6476 5.2566 3.4562 40 1 2.2700 7.8091 1.1232 41 1 3.7227 8.8381 1.1166 42 1 3.7535 7.2499 0.3140 43 1 5.6881 6.7236 3.4572 44 1 5.7488 6.5830 1.6832 45 1 5.6090 9.0180 1.4437 46 1 6.9444 8.6227 2.5562 47 1 8.4092 10.9990 2.4144 48 1 3.3300 9.8771 2.6873 49 1 3.4447 9.9417 4.4637 50 1 2.1827 7.9273 3.6301 51 1 3.6243 7.5010 4.5836 52 1 3.9098 4.5761 -1.2681 53 1 4.0330 3.0003 -2.0888 54 1 1.7281 3.8649 -2.2625 55 1 1.6352 4.0137 -0.4910 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324897625.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:53 Heat of formation + Delta-G solvation = -104.874504 kcal Electronic energy + Delta-G solvation = -31491.771872 eV Core-core repulsion = 27527.406487 eV Total energy + Delta-G solvation = -3964.365385 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 3.05 seconds Orbital eigenvalues (eV) -41.78185 -40.39241 -39.13381 -36.60591 -35.22669 -34.62636 -34.41976 -32.61319 -31.58173 -30.70870 -28.79391 -28.14193 -26.71639 -25.63631 -24.56617 -23.97602 -23.18614 -22.27592 -22.03025 -20.62624 -19.61294 -18.30321 -17.75197 -17.37167 -17.29930 -16.89947 -16.78895 -16.33567 -15.83445 -15.57691 -15.46621 -15.13769 -15.03644 -14.96389 -14.65899 -14.59580 -14.36527 -14.13156 -14.07817 -13.62569 -13.28409 -13.16061 -13.12611 -12.95155 -12.73241 -12.67592 -12.58043 -12.53125 -12.33768 -12.23444 -12.08040 -11.89686 -11.83464 -11.80460 -11.60950 -11.46470 -11.35731 -11.13243 -11.04499 -10.72482 -10.48934 -10.21403 -10.01218 -8.63293 -7.86464 -5.29846 1.45390 1.47231 1.55218 1.63353 2.22595 2.51205 2.87945 3.27119 3.55312 3.70646 3.72223 3.80251 3.82631 3.86925 3.94313 3.95895 4.08437 4.27023 4.29844 4.41918 4.44886 4.51705 4.53321 4.60049 4.63338 4.71069 4.72271 4.77484 4.83679 4.85075 4.85824 4.90524 4.92416 4.95695 5.03352 5.07400 5.10005 5.12013 5.13119 5.17172 5.27081 5.30844 5.32447 5.40484 5.42327 5.48089 5.51132 5.57219 5.67594 5.85925 6.34030 6.40975 6.55703 7.17704 7.25114 7.90283 8.40221 9.19039 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.025173 B = 0.002326 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.038103 B =12036.712830 C =12179.793777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.113 4.113 3 C 0.078 3.922 4 H 0.056 0.944 5 C -0.126 4.126 6 C -0.111 4.111 7 H 0.123 0.877 8 C 0.511 3.489 9 O -0.577 6.577 10 N -0.713 5.713 11 C 0.143 3.857 12 C -0.053 4.053 13 C -0.135 4.135 14 C -0.115 4.115 15 C 0.179 3.821 16 N -0.610 5.610 17 C -0.260 4.260 18 H 0.061 0.939 19 C -0.049 4.049 20 N -0.931 5.931 21 Si 0.961 3.039 22 H -0.287 1.287 23 H -0.295 1.295 24 H -0.272 1.272 25 C 0.143 3.857 26 C -0.112 4.112 27 C -0.141 4.141 28 C 0.054 3.946 29 O -0.391 6.391 30 H 0.042 0.958 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.071 0.929 37 H 0.410 0.590 38 H 0.065 0.935 39 H 0.050 0.950 40 H 0.063 0.937 41 H 0.046 0.954 42 H 0.065 0.935 43 H 0.040 0.960 44 H 0.070 0.930 45 H 0.009 0.991 46 H 0.047 0.953 47 H 0.249 0.751 48 H 0.023 0.977 49 H 0.046 0.954 50 H 0.080 0.920 51 H 0.050 0.950 52 H 0.094 0.906 53 H 0.100 0.900 54 H 0.112 0.888 55 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.911 -18.739 -10.116 23.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.151 4.151 3 C 0.021 3.979 4 H 0.074 0.926 5 C -0.164 4.164 6 C -0.133 4.133 7 H 0.141 0.859 8 C 0.299 3.701 9 O -0.457 6.457 10 N -0.366 5.366 11 C 0.018 3.982 12 C -0.054 4.054 13 C -0.192 4.192 14 C -0.154 4.154 15 C 0.053 3.947 16 N -0.334 5.334 17 C -0.391 4.391 18 H 0.079 0.921 19 C -0.245 4.245 20 N -0.577 5.577 21 Si 0.790 3.210 22 H -0.214 1.214 23 H -0.221 1.221 24 H -0.196 1.196 25 C 0.017 3.983 26 C -0.152 4.152 27 C -0.178 4.178 28 C -0.022 4.022 29 O -0.311 6.311 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.112 0.888 36 H 0.090 0.910 37 H 0.247 0.753 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.084 0.916 43 H 0.059 0.941 44 H 0.089 0.911 45 H 0.027 0.973 46 H 0.065 0.935 47 H 0.058 0.942 48 H 0.041 0.959 49 H 0.065 0.935 50 H 0.098 0.902 51 H 0.069 0.931 52 H 0.112 0.888 53 H 0.119 0.881 54 H 0.130 0.870 55 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -10.396 -19.126 -9.734 23.846 hybrid contribution 1.349 1.195 0.863 1.998 sum -9.047 -17.931 -8.870 21.955 Atomic orbital electron populations 1.21685 0.95435 1.01956 1.01366 1.21538 0.96688 0.93830 1.03010 1.22372 0.94145 0.94676 0.86693 0.92645 1.21982 0.96194 0.94771 1.03443 1.21507 1.03229 0.95571 0.92947 0.85943 1.21104 0.80002 0.82043 0.86943 1.90639 1.39009 1.69743 1.46303 1.46058 1.51377 1.10575 1.28564 1.21243 0.98056 0.90273 0.88581 1.20551 0.95088 0.93064 0.96659 1.21856 1.01099 1.00610 0.95666 1.22037 0.94903 0.98007 1.00481 1.20605 0.96792 0.87892 0.89399 1.44297 1.00926 1.52267 1.35871 1.19478 0.99660 1.26493 0.93439 0.92111 1.25695 1.01548 0.99926 0.97313 1.70163 1.21577 1.50975 1.15004 0.85354 0.79245 0.77256 0.79128 1.21413 1.22122 1.19640 1.21036 0.83921 0.94882 0.98419 1.21880 1.00101 0.96128 0.97062 1.22235 0.96447 1.02811 0.96332 1.22705 0.94374 0.82831 1.02325 1.87869 1.79174 1.25002 1.39022 0.93859 0.92920 0.91429 0.90605 0.90146 0.88841 0.90982 0.75253 0.91695 0.93136 0.91750 0.93490 0.91601 0.94108 0.91148 0.97312 0.93467 0.94171 0.95932 0.93514 0.90174 0.93107 0.88782 0.88137 0.87021 0.95117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 9.81 71.98 0.71 -1.83 16 2 C -0.11 -1.96 5.64 30.59 0.17 -1.78 16 3 C 0.08 1.63 2.35 30.62 0.07 1.70 16 4 H 0.06 1.50 5.81 -2.39 -0.01 1.48 16 5 C -0.13 -2.20 4.56 30.68 0.14 -2.06 16 6 C -0.11 -1.82 3.04 -11.42 -0.03 -1.86 16 7 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 8 C 0.51 11.79 5.81 87.66 0.51 12.30 16 9 O -0.58 -17.62 13.85 -3.02 -0.04 -17.66 16 10 N -0.71 -15.29 4.83 -463.05 -2.24 -17.53 16 11 C 0.14 3.62 4.56 86.38 0.39 4.02 16 12 C -0.05 -1.50 0.53 -52.16 -0.03 -1.52 16 13 C -0.14 -3.47 7.54 71.98 0.54 -2.93 16 14 C -0.12 -3.90 4.75 30.67 0.15 -3.75 16 15 C 0.18 8.06 4.84 86.36 0.42 8.48 16 16 N -0.61 -29.62 2.99 -699.11 -2.09 -31.71 16 17 C -0.26 -14.19 9.59 84.03 0.81 -13.38 16 18 H 0.06 3.28 7.89 -2.91 -0.02 3.26 16 19 C -0.05 -2.73 4.91 84.86 0.42 -2.31 16 20 N -0.93 -53.91 11.19 21.65 0.24 -53.67 16 21 Si 0.96 44.71 29.59 68.60 2.03 46.74 16 22 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 23 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 24 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 25 C 0.14 5.66 6.04 86.36 0.52 6.18 16 26 C -0.11 -3.52 4.91 30.67 0.15 -3.37 16 27 C -0.14 -1.84 5.59 30.75 0.17 -1.67 16 28 C 0.05 0.94 6.62 72.08 0.48 1.41 16 29 O -0.39 -8.27 9.95 -148.98 -1.48 -9.75 16 30 H 0.04 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.05 0.98 7.82 -2.39 -0.02 0.96 16 32 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 33 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.07 1.37 8.03 -2.38 -0.02 1.35 16 37 H 0.41 7.29 5.57 -92.71 -0.52 6.78 16 38 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.05 1.45 8.14 -2.39 -0.02 1.44 16 40 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.05 1.50 4.98 -2.39 -0.01 1.49 16 42 H 0.07 1.39 6.86 -2.39 -0.02 1.38 16 43 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.07 1.99 6.82 -2.38 -0.02 1.98 16 45 H 0.01 0.42 6.69 -2.38 -0.02 0.40 16 46 H 0.05 2.49 6.04 -2.38 -0.01 2.47 16 47 H 0.25 14.01 8.31 -92.70 -0.77 13.24 16 48 H 0.02 0.89 6.69 -2.38 -0.02 0.88 16 49 H 0.05 1.86 7.94 -2.39 -0.02 1.85 16 50 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 51 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 52 H 0.09 0.97 7.52 -2.39 -0.02 0.96 16 53 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 54 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 55 H 0.03 0.64 7.38 -2.38 -0.02 0.62 16 Total: -1.00 -67.05 403.13 2.34 -64.71 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: 0.34 Total: 21.25 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: 5.58 Total: -2.38 kcal Atomic # 7 Polarization: -98.82 SS G_CDS: -4.09 Total: -102.91 kcal Atomic # 8 Polarization: -25.89 SS G_CDS: -1.52 Total: -27.42 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -67.05 2.34 -64.71 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324897625.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.164 kcal (2) G-P(sol) polarization free energy of solvation -67.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.05 seconds