Wall clock time and date at job start Tue Mar 31 2020 23:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47227 * 2 1 4 4 H 1.09000 * 109.46984 * 55.00020 * 3 2 1 5 5 C 1.53001 * 109.47300 * 175.00017 * 3 2 1 6 6 O 1.42903 * 109.47068 * 294.99786 * 3 2 1 7 7 C 1.42901 * 113.99888 * 149.99858 * 6 3 2 8 8 C 1.50699 * 109.47218 * 180.02562 * 7 6 3 9 9 O 1.21279 * 120.00110 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99918 * 180.02562 * 8 7 6 11 11 C 1.46920 * 120.64522 * 359.71393 * 10 8 7 12 12 C 1.53626 * 108.54096 * 126.32983 * 11 10 8 13 13 C 1.53046 * 109.25919 * 54.86629 * 12 11 10 14 14 C 1.53031 * 109.43905 * 58.57538 * 13 12 11 15 15 C 1.53190 * 109.33517 * 181.23097 * 14 13 12 16 16 N 1.46934 * 108.77966 * 305.37787 * 15 14 13 17 17 C 1.36939 * 120.63846 * 233.61717 * 16 15 14 18 18 H 1.08000 * 120.00272 * 27.68968 * 17 16 15 19 19 C 1.38814 * 119.99740 * 207.69269 * 17 16 15 20 20 N 1.31621 * 119.99863 * 17.35855 * 19 17 16 21 21 Si 1.86796 * 120.00108 * 197.35399 * 19 17 16 22 22 H 1.48503 * 109.46917 * 60.00103 * 21 19 17 23 23 H 1.48502 * 109.47252 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47237 * 300.00601 * 21 19 17 25 25 C 1.46921 * 118.71749 * 53.63633 * 16 15 14 26 26 C 1.53049 * 109.39355 * 178.60436 * 13 12 11 27 27 C 1.53037 * 109.54744 * 298.56637 * 13 12 11 28 28 C 1.46934 * 120.63984 * 180.02562 * 10 8 7 29 29 H 1.08994 * 109.47554 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47164 * 300.00500 * 1 2 3 31 31 H 1.09002 * 109.47113 * 59.99771 * 1 2 3 32 32 H 1.09000 * 109.46905 * 240.00234 * 2 1 3 33 33 H 1.08997 * 109.47172 * 119.99744 * 2 1 3 34 34 H 1.09000 * 109.47100 * 60.00074 * 5 3 2 35 35 H 1.09001 * 109.47234 * 179.97438 * 5 3 2 36 36 H 1.09001 * 109.47067 * 300.00192 * 5 3 2 37 37 H 1.09001 * 109.47368 * 60.00132 * 7 6 3 38 38 H 1.09005 * 109.47472 * 300.00087 * 7 6 3 39 39 H 1.08995 * 109.59219 * 246.16234 * 11 10 8 40 40 H 1.09002 * 109.58951 * 6.58851 * 11 10 8 41 41 H 1.08994 * 109.62770 * 294.87489 * 12 11 10 42 42 H 1.08988 * 109.43148 * 174.74165 * 12 11 10 43 43 H 1.08998 * 109.49395 * 301.18841 * 14 13 12 44 44 H 1.08995 * 109.48960 * 61.27665 * 14 13 12 45 45 H 1.08995 * 109.58790 * 185.58745 * 15 14 13 46 46 H 1.09002 * 109.70303 * 65.23060 * 15 14 13 47 47 H 0.97001 * 120.00037 * 180.02562 * 20 19 17 48 48 H 1.09003 * 109.58844 * 186.56793 * 25 16 15 49 49 H 1.09001 * 109.70673 * 66.21521 * 25 16 15 50 50 H 1.09001 * 109.48969 * 298.69169 * 26 13 12 51 51 H 1.09002 * 109.49131 * 58.77431 * 26 13 12 52 52 H 1.08995 * 109.49103 * 301.33853 * 27 13 12 53 53 H 1.08995 * 109.49038 * 181.25738 * 27 13 12 54 54 H 1.09004 * 109.58884 * 353.39771 * 28 10 8 55 55 H 1.09000 * 109.58868 * 113.68736 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5649 1.4443 0.1257 6 8 1.6620 2.0814 -1.2211 7 6 1.4560 3.4903 -1.1003 8 6 1.0628 4.0571 -2.4401 9 8 0.9687 3.3266 -3.4037 10 7 0.8166 5.3761 -2.5678 11 6 0.9213 6.2731 -1.4090 12 6 1.8682 7.4280 -1.7691 13 6 1.3713 8.1084 -3.0468 14 6 -0.0533 8.6230 -2.8288 15 6 -0.5595 9.2763 -4.1186 16 7 0.3987 10.3103 -4.5328 17 6 -0.0183 11.5924 -4.7725 18 1 -0.8887 11.9810 -4.2648 19 6 0.6778 12.3927 -5.6680 20 7 1.5078 11.8463 -6.5312 21 14 0.4366 14.2449 -5.6482 22 1 0.8194 14.7796 -4.3167 23 1 1.2883 14.8662 -6.6940 24 1 -0.9890 14.5613 -5.9174 25 6 1.8128 9.9418 -4.6853 26 6 2.2928 9.2814 -3.3892 27 6 1.3788 7.1015 -4.1993 28 6 0.4317 5.9436 -3.8673 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.9995 0.9053 -0.7161 35 1 3.9283 2.4720 0.1253 36 1 3.8532 0.9570 1.0571 37 1 2.3769 3.9644 -0.7610 38 1 0.6618 3.6808 -0.3784 39 1 -0.0641 6.6682 -1.1625 40 1 1.3206 5.7236 -0.5564 41 1 2.8738 7.0400 -1.9311 42 1 1.8839 8.1515 -0.9542 43 1 -0.7043 7.7901 -2.5632 44 1 -0.0553 9.3579 -2.0239 45 1 -1.5336 9.7314 -3.9398 46 1 -0.6463 8.5236 -4.9023 47 1 1.9945 12.4055 -7.1568 48 1 2.4045 10.8363 -4.8805 49 1 1.9232 9.2427 -5.5143 50 1 2.2697 10.0105 -2.5792 51 1 3.3114 8.9169 -3.5222 52 1 2.3889 6.7168 -4.3395 53 1 1.0461 7.5928 -5.1136 54 1 0.5080 5.1766 -4.6381 55 1 -0.5936 6.3102 -3.8168 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328503586.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:41 Heat of formation + Delta-G solvation = -89.952634 kcal Electronic energy + Delta-G solvation = -31236.243647 eV Core-core repulsion = 27272.525323 eV Total energy + Delta-G solvation = -3963.718325 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 9.05 seconds Orbital eigenvalues (eV) -41.71226 -40.22712 -39.05624 -37.34811 -35.13766 -34.71447 -33.02968 -32.33443 -31.61825 -30.77805 -29.82043 -28.44817 -26.63100 -24.85040 -24.57939 -24.09946 -23.48786 -22.19116 -21.92618 -20.57083 -19.20460 -18.57366 -18.04722 -17.76268 -17.12156 -16.80612 -16.69547 -15.89722 -15.75011 -15.63047 -15.24217 -15.15481 -15.08708 -14.84942 -14.75622 -14.53454 -14.32901 -14.27996 -13.85060 -13.67473 -13.28908 -13.15189 -13.01595 -12.92416 -12.88751 -12.72746 -12.53556 -12.51109 -12.28410 -12.24108 -12.13029 -12.06349 -11.89487 -11.75200 -11.65363 -11.44382 -11.19155 -11.06420 -10.90136 -10.69307 -10.55708 -10.46371 -9.60316 -8.61391 -7.84655 -5.29021 1.46469 1.48480 1.55259 1.56014 1.74283 2.52437 2.87893 3.28770 3.52754 3.73915 3.81738 3.83291 3.86981 3.94664 4.08151 4.15385 4.15413 4.22583 4.28215 4.31386 4.35542 4.45841 4.49413 4.56883 4.65146 4.69630 4.72051 4.74640 4.76990 4.81467 4.83836 4.84523 4.92023 5.01298 5.07972 5.08707 5.10958 5.12490 5.20126 5.23895 5.31572 5.31944 5.38026 5.45594 5.45876 5.49455 5.59354 5.63655 5.69301 5.85309 6.20387 6.41561 6.45029 7.15381 7.18012 7.91482 8.42293 9.20642 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.033334 B = 0.002171 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.782816 B =12892.419989 C =13009.596085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C 0.077 3.923 4 H 0.085 0.915 5 C -0.175 4.175 6 O -0.390 6.390 7 C 0.050 3.950 8 C 0.507 3.493 9 O -0.581 6.581 10 N -0.602 5.602 11 C 0.103 3.897 12 C -0.118 4.118 13 C -0.042 4.042 14 C -0.110 4.110 15 C 0.138 3.862 16 N -0.608 5.608 17 C -0.258 4.258 18 H 0.066 0.934 19 C -0.054 4.054 20 N -0.936 5.936 21 Si 0.965 3.035 22 H -0.277 1.277 23 H -0.297 1.297 24 H -0.276 1.276 25 C 0.178 3.822 26 C -0.117 4.117 27 C -0.114 4.114 28 C 0.121 3.879 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.037 0.963 32 H 0.054 0.946 33 H 0.098 0.902 34 H 0.048 0.952 35 H 0.060 0.940 36 H 0.086 0.914 37 H 0.103 0.897 38 H 0.109 0.891 39 H 0.090 0.910 40 H 0.116 0.884 41 H 0.066 0.934 42 H 0.093 0.907 43 H 0.081 0.919 44 H 0.061 0.939 45 H 0.046 0.954 46 H 0.012 0.988 47 H 0.248 0.752 48 H 0.045 0.955 49 H -0.006 1.006 50 H 0.054 0.946 51 H 0.058 0.942 52 H 0.053 0.947 53 H 0.057 0.943 54 H 0.067 0.933 55 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.334 -19.180 20.960 28.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C 0.020 3.980 4 H 0.103 0.897 5 C -0.233 4.233 6 O -0.309 6.309 7 C -0.030 4.030 8 C 0.296 3.704 9 O -0.460 6.460 10 N -0.336 5.336 11 C -0.018 4.018 12 C -0.156 4.156 13 C -0.042 4.042 14 C -0.148 4.148 15 C 0.013 3.987 16 N -0.331 5.331 17 C -0.389 4.389 18 H 0.083 0.917 19 C -0.250 4.250 20 N -0.583 5.583 21 Si 0.793 3.207 22 H -0.203 1.203 23 H -0.223 1.223 24 H -0.202 1.202 25 C 0.052 3.948 26 C -0.156 4.156 27 C -0.153 4.153 28 C -0.002 4.002 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.117 0.883 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.105 0.895 37 H 0.121 0.879 38 H 0.127 0.873 39 H 0.108 0.892 40 H 0.134 0.866 41 H 0.085 0.915 42 H 0.112 0.888 43 H 0.099 0.901 44 H 0.080 0.920 45 H 0.065 0.935 46 H 0.029 0.971 47 H 0.057 0.943 48 H 0.064 0.936 49 H 0.012 0.988 50 H 0.073 0.927 51 H 0.076 0.924 52 H 0.072 0.928 53 H 0.075 0.925 54 H 0.085 0.915 55 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.335 -19.592 20.170 28.150 hybrid contribution 0.124 1.461 -1.059 1.808 sum 1.460 -18.131 19.111 26.384 Atomic orbital electron populations 1.21720 0.95570 1.01932 1.01599 1.21673 0.96486 0.94693 1.03008 1.22457 0.94990 0.94303 0.86224 0.89739 1.22310 0.95333 1.02731 1.02882 1.88043 1.89777 1.18889 1.34185 1.22376 1.03380 0.83560 0.93640 1.20981 0.76469 0.81805 0.91121 1.90690 1.53487 1.59517 1.42310 1.48157 1.67758 1.06620 1.11083 1.22211 1.01481 0.90958 0.87174 1.22033 0.98999 0.97400 0.97121 1.20337 0.95494 0.93471 0.94923 1.21983 0.95626 0.99597 0.97636 1.21096 0.92442 0.90473 0.94669 1.44281 1.03233 1.06161 1.79465 1.19478 1.12350 0.89323 1.17723 0.91667 1.25781 1.00951 1.02552 0.95671 1.70194 1.32277 1.35007 1.20776 0.85374 0.77468 0.80824 0.76993 1.20326 1.22337 1.20215 1.20557 0.84929 0.96533 0.92754 1.22032 0.97955 0.97069 0.98560 1.21875 0.99083 0.95319 0.98981 1.21475 0.98477 0.95056 0.85179 0.92128 0.91653 0.94388 0.92729 0.88330 0.93299 0.92076 0.89485 0.87896 0.87299 0.89196 0.86635 0.91493 0.88818 0.90103 0.92010 0.93509 0.97052 0.94318 0.93637 0.98767 0.92677 0.92374 0.92844 0.92485 0.91496 0.90413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.81 71.98 0.71 -1.34 16 2 C -0.12 -1.56 5.64 30.59 0.17 -1.38 16 3 C 0.08 1.03 2.72 30.59 0.08 1.11 16 4 H 0.08 0.72 7.79 -2.39 -0.02 0.70 16 5 C -0.18 -2.00 9.53 71.98 0.69 -1.32 16 6 O -0.39 -8.38 9.06 -129.94 -1.18 -9.56 16 7 C 0.05 0.82 4.57 71.24 0.33 1.15 16 8 C 0.51 13.07 7.78 87.66 0.68 13.76 16 9 O -0.58 -21.29 15.91 16.01 0.25 -21.04 16 10 N -0.60 -13.57 2.97 -817.98 -2.43 -16.00 16 11 C 0.10 1.53 5.90 86.51 0.51 2.04 16 12 C -0.12 -2.23 4.92 30.82 0.15 -2.07 16 13 C -0.04 -1.18 0.51 -52.13 -0.03 -1.20 16 14 C -0.11 -3.19 4.15 30.67 0.13 -3.07 16 15 C 0.14 5.49 6.04 86.36 0.52 6.01 16 16 N -0.61 -29.96 2.99 -699.11 -2.09 -32.05 16 17 C -0.26 -14.15 9.59 84.03 0.81 -13.35 16 18 H 0.07 3.47 7.89 -2.91 -0.02 3.45 16 19 C -0.05 -3.06 4.91 84.86 0.42 -2.65 16 20 N -0.94 -56.07 11.19 21.65 0.24 -55.83 16 21 Si 0.97 45.08 29.59 68.60 2.03 47.11 16 22 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 23 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 24 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 25 C 0.18 8.47 4.84 86.36 0.42 8.89 16 26 C -0.12 -4.13 4.90 30.67 0.15 -3.98 16 27 C -0.11 -3.51 4.15 30.68 0.13 -3.39 16 28 C 0.12 3.34 5.96 86.37 0.51 3.86 16 29 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.04 0.71 7.82 -2.39 -0.02 0.70 16 32 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.06 0.65 7.87 -2.39 -0.02 0.63 16 36 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.10 1.17 7.43 -2.39 -0.02 1.15 16 38 H 0.11 1.09 7.88 -2.38 -0.02 1.08 16 39 H 0.09 1.17 6.66 -2.39 -0.02 1.16 16 40 H 0.12 0.88 5.94 -2.39 -0.01 0.87 16 41 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.08 1.91 4.97 -2.39 -0.01 1.90 16 44 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.05 1.85 7.93 -2.39 -0.02 1.83 16 46 H 0.01 0.47 6.74 -2.39 -0.02 0.46 16 47 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 48 H 0.05 2.50 6.04 -2.39 -0.01 2.49 16 49 H -0.01 -0.29 6.67 -2.39 -0.02 -0.31 16 50 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 51 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 52 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 53 H 0.06 2.14 4.99 -2.39 -0.01 2.13 16 54 H 0.07 2.15 7.01 -2.39 -0.02 2.13 16 55 H 0.08 2.05 6.73 -2.39 -0.02 2.03 16 Total: -1.00 -74.89 405.30 4.05 -70.83 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 0.85 Total: 13.48 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: 6.37 Total: 3.06 kcal Atomic # 7 Polarization: -99.60 SS G_CDS: -4.28 Total: -103.88 kcal Atomic # 8 Polarization: -29.68 SS G_CDS: -0.92 Total: -30.60 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -74.89 4.05 -70.83 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328503586.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.118 kcal (2) G-P(sol) polarization free energy of solvation -74.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.05 seconds