Wall clock time and date at job start Wed Apr 1 2020 00:07:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 C 1.53009 * 109.46822 * 2 1
4 4 H 1.08997 * 109.47008 * 57.43015 * 3 2 1
5 5 O 1.42903 * 109.46849 * 297.42426 * 3 2 1
6 6 C 1.42903 * 113.99386 * 154.41779 * 5 3 2
7 7 C 1.53006 * 109.47046 * 274.53684 * 6 5 3
8 8 C 1.52994 * 109.47111 * 180.02562 * 7 6 5
9 9 C 1.53003 * 109.47492 * 59.99850 * 8 7 6
10 10 C 1.53001 * 109.46788 * 300.00373 * 9 8 7
11 11 C 1.52995 * 109.47255 * 59.99935 * 10 9 8
12 12 C 1.50704 * 109.47176 * 177.42649 * 3 2 1
13 13 O 1.21282 * 119.99567 * 104.23798 * 12 3 2
14 14 N 1.34776 * 119.99963 * 284.24390 * 12 3 2
15 15 C 1.46497 * 119.99735 * 182.00182 * 14 12 3
16 16 C 1.46501 * 120.00135 * 1.99750 * 14 12 3
17 17 C 1.53776 * 113.69217 * 194.55094 * 16 14 12
18 18 C 1.53784 * 87.08133 * 89.12795 * 17 16 14
19 19 N 1.46503 * 113.61386 * 270.88603 * 18 17 16
20 20 C 1.36933 * 119.99693 * 257.15016 * 19 18 17
21 21 H 1.08000 * 120.00542 * 0.02562 * 20 19 18
22 22 C 1.38819 * 119.99688 * 180.02562 * 20 19 18
23 23 N 1.31615 * 119.99935 * 0.02562 * 22 20 19
24 24 Si 1.86798 * 119.99766 * 180.02562 * 22 20 19
25 25 H 1.48504 * 109.47370 * 359.97438 * 24 22 20
26 26 H 1.48500 * 109.47158 * 119.99950 * 24 22 20
27 27 H 1.48506 * 109.47160 * 239.99865 * 24 22 20
28 28 C 1.53781 * 113.61536 * 292.08902 * 16 14 12
29 29 H 1.09000 * 109.46913 * 185.05654 * 1 2 3
30 30 H 1.08998 * 109.47723 * 305.05353 * 1 2 3
31 31 H 1.09000 * 109.47457 * 65.06285 * 1 2 3
32 32 H 1.09002 * 109.47636 * 240.00382 * 2 1 3
33 33 H 1.09000 * 109.47421 * 119.99814 * 2 1 3
34 34 H 1.08993 * 109.47418 * 34.54005 * 6 5 3
35 35 H 1.09003 * 109.47287 * 300.00275 * 7 6 5
36 36 H 1.09001 * 109.47040 * 60.00600 * 7 6 5
37 37 H 1.09003 * 109.46884 * 300.00050 * 8 7 6
38 38 H 1.09001 * 109.47582 * 180.02562 * 8 7 6
39 39 H 1.08991 * 109.47333 * 180.02562 * 9 8 7
40 40 H 1.09003 * 109.46893 * 60.00205 * 9 8 7
41 41 H 1.08993 * 109.47253 * 299.99471 * 10 9 8
42 42 H 1.09010 * 109.46863 * 179.97438 * 10 9 8
43 43 H 1.09006 * 109.47011 * 179.97438 * 11 10 9
44 44 H 1.08994 * 109.47791 * 59.99934 * 11 10 9
45 45 H 1.09002 * 109.47181 * 265.00472 * 15 14 12
46 46 H 1.09000 * 109.47223 * 25.01291 * 15 14 12
47 47 H 1.09007 * 109.46938 * 145.00759 * 15 14 12
48 48 H 1.08997 * 112.84842 * 63.28162 * 16 14 12
49 49 H 1.08999 * 113.61574 * 203.67139 * 17 16 14
50 50 H 1.08999 * 113.61564 * 334.58663 * 17 16 14
51 51 H 1.08998 * 113.69688 * 139.99006 * 18 17 16
52 52 H 0.96999 * 120.00106 * 77.15578 * 19 18 17
53 53 H 0.97001 * 119.99644 * 179.97438 * 23 22 20
54 54 H 1.09004 * 113.61235 * 25.34437 * 28 16 14
55 55 H 1.08997 * 113.61804 * 156.24835 * 28 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 1 1.6394 1.9695 0.8660
5 8 1.6136 2.0985 -1.1959
6 6 1.5089 3.5185 -1.0742
7 6 0.1346 3.8819 -0.5082
8 6 0.0222 5.4022 -0.3785
9 6 0.1929 6.0456 -1.7561
10 6 1.5671 5.6822 -2.3221
11 6 1.6794 4.1619 -2.4518
12 6 3.5456 1.4432 0.0638
13 8 4.1945 1.6865 -0.9315
14 7 4.1709 1.1732 1.2268
15 6 5.6334 1.2168 1.2994
16 6 3.3880 0.8363 2.4184
17 6 4.1941 0.9024 3.7263
18 6 3.7853 2.3825 3.8113
19 7 4.7157 3.2881 3.1326
20 6 5.6064 4.0282 3.8634
21 1 5.6234 3.9440 4.9400
22 6 6.4876 4.8868 3.2204
23 7 6.4665 4.9898 1.9085
24 14 7.7031 5.8958 4.2172
25 1 7.5246 5.6004 5.6616
26 1 9.0877 5.5485 3.8079
27 1 7.4630 7.3411 3.9747
28 6 2.5579 2.0109 2.9626
29 1 -0.3633 -1.0237 0.0906
30 1 -0.3634 0.5902 0.8412
31 1 -0.3634 0.4333 -0.9318
32 1 1.8934 -0.5138 -0.8900
33 1 1.8933 -0.5138 0.8900
34 1 2.2863 3.8840 -0.4034
35 1 -0.6429 3.5164 -1.1791
36 1 0.0129 3.4232 0.4731
37 1 0.7997 5.7680 0.2921
38 1 -0.9566 5.6611 0.0251
39 1 0.1133 7.1287 -1.6636
40 1 -0.5847 5.6798 -2.4268
41 1 2.3445 6.0480 -1.6515
42 1 1.6885 6.1402 -3.3038
43 1 2.6583 3.9030 -2.8555
44 1 0.9020 3.7960 -3.1225
45 1 6.0346 0.2142 1.1512
46 1 6.0161 1.8797 0.5233
47 1 5.9377 1.5890 2.2777
48 1 2.8174 -0.0853 2.3033
49 1 3.7798 0.2885 4.5260
50 1 5.2647 0.7525 3.5875
51 1 3.5353 2.7107 4.8202
52 1 4.7006 3.3636 2.1657
53 1 7.0820 5.5900 1.4592
54 1 2.3078 2.7557 2.2071
55 1 1.6964 1.7000 3.5534
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001333070761.mol2 55
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 00:07:03
Heat of formation + Delta-G solvation = -72.396625 kcal
Electronic energy + Delta-G solvation = -32977.907993 eV
Core-core repulsion = 29014.950954 eV
Total energy + Delta-G solvation = -3962.957039 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 338.236 amu
Computer time = 1.27 seconds
Orbital eigenvalues (eV)
-41.92379 -40.25950 -39.24599 -37.52378 -35.76684 -34.64798 -34.30491 -31.88010
-31.75254 -30.59528 -29.65375 -26.91226 -26.59060 -25.79057 -24.53654 -23.67525
-23.25582 -22.77314 -21.04201 -20.78677 -19.60212 -19.36439 -18.34570 -17.87456
-17.00117 -16.85626 -16.64349 -16.41685 -15.88424 -15.78434 -15.37185 -15.28920
-15.03485 -14.83194 -14.80019 -14.57929 -14.06366 -13.84896 -13.67467 -13.64287
-13.41627 -13.29312 -13.17073 -13.03234 -12.86002 -12.82900 -12.59499 -12.47851
-12.23112 -12.13657 -12.08300 -11.97995 -11.92249 -11.74811 -11.70414 -11.62795
-11.46236 -11.29669 -11.09546 -10.86642 -10.81727 -10.18399 -9.53156 -8.97355
-7.93693 -5.22892 1.44812 1.45322 1.54967 1.55227 1.96151 2.54119
2.59666 3.37693 3.38443 3.61499 3.66202 3.70461 3.75498 3.86867
3.91808 3.98392 4.07081 4.19073 4.20933 4.25459 4.26145 4.33443
4.45645 4.50005 4.51700 4.53449 4.58071 4.66142 4.66232 4.80918
4.86309 4.90401 4.94974 4.97285 5.01051 5.04980 5.07362 5.11865
5.15203 5.16580 5.19534 5.21362 5.28575 5.33800 5.34183 5.45928
5.46676 5.48967 5.52505 5.60269 6.08562 6.26557 6.50017 7.18968
7.33399 8.12790 8.32922 9.28062
Molecular weight = 338.24amu
Principal moments of inertia in cm(-1)
A = 0.009545 B = 0.004694 C = 0.003720
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2932.781963 B = 5963.452775 C = 7525.212918
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C -0.111 4.111
3 C 0.078 3.922
4 H 0.103 0.897
5 O -0.363 6.363
6 C 0.089 3.911
7 C -0.129 4.129
8 C -0.119 4.119
9 C -0.114 4.114
10 C -0.118 4.118
11 C -0.109 4.109
12 C 0.478 3.522
13 O -0.584 6.584
14 N -0.583 5.583
15 C 0.090 3.910
16 C 0.108 3.892
17 C -0.167 4.167
18 C 0.139 3.861
19 N -0.720 5.720
20 C -0.235 4.235
21 H 0.081 0.919
22 C -0.073 4.073
23 N -0.966 5.966
24 Si 0.967 3.033
25 H -0.262 1.262
26 H -0.299 1.299
27 H -0.300 1.300
28 C -0.160 4.160
29 H 0.077 0.923
30 H 0.068 0.932
31 H 0.052 0.948
32 H 0.059 0.941
33 H 0.101 0.899
34 H 0.017 0.983
35 H 0.087 0.913
36 H 0.068 0.932
37 H 0.041 0.959
38 H 0.089 0.911
39 H 0.073 0.927
40 H 0.082 0.918
41 H 0.038 0.962
42 H 0.081 0.919
43 H 0.039 0.961
44 H 0.085 0.915
45 H 0.057 0.943
46 H 0.032 0.968
47 H 0.090 0.910
48 H 0.121 0.879
49 H 0.127 0.873
50 H 0.059 0.941
51 H 0.068 0.932
52 H 0.375 0.625
53 H 0.246 0.754
54 H 0.046 0.954
55 H 0.140 0.860
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.535 -8.910 -0.733 20.578
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.149 4.149
3 C 0.017 3.983
4 H 0.121 0.879
5 O -0.280 6.280
6 C 0.032 3.968
7 C -0.166 4.166
8 C -0.157 4.157
9 C -0.151 4.151
10 C -0.156 4.156
11 C -0.146 4.146
12 C 0.267 3.733
13 O -0.464 6.464
14 N -0.316 5.316
15 C -0.053 4.053
16 C 0.006 3.994
17 C -0.207 4.207
18 C 0.029 3.971
19 N -0.359 5.359
20 C -0.367 4.367
21 H 0.099 0.901
22 C -0.265 4.265
23 N -0.616 5.616
24 Si 0.797 3.203
25 H -0.186 1.186
26 H -0.227 1.227
27 H -0.228 1.228
28 C -0.199 4.199
29 H 0.096 0.904
30 H 0.087 0.913
31 H 0.071 0.929
32 H 0.078 0.922
33 H 0.119 0.881
34 H 0.035 0.965
35 H 0.106 0.894
36 H 0.087 0.913
37 H 0.060 0.940
38 H 0.107 0.893
39 H 0.092 0.908
40 H 0.100 0.900
41 H 0.057 0.943
42 H 0.099 0.901
43 H 0.058 0.942
44 H 0.104 0.896
45 H 0.076 0.924
46 H 0.051 0.949
47 H 0.108 0.892
48 H 0.138 0.862
49 H 0.145 0.855
50 H 0.078 0.922
51 H 0.086 0.914
52 H 0.208 0.792
53 H 0.055 0.945
54 H 0.065 0.935
55 H 0.158 0.842
Dipole moment (debyes) X Y Z Total
from point charges -18.143 -8.784 -1.258 20.196
hybrid contribution 2.022 1.206 -0.075 2.355
sum -16.121 -7.578 -1.333 17.863
Atomic orbital electron populations
1.21662 0.92212 1.03114 1.02605 1.21642 0.98970 0.90692 1.03589
1.22470 0.87617 0.98053 0.90165 0.87927 1.87934 1.86238 1.19495
1.34372 1.22180 0.96736 0.80335 0.97588 1.21987 0.96051 0.96938
1.01643 1.21529 1.02394 0.94177 0.97583 1.21546 0.96229 1.00902
0.96457 1.21526 0.98329 0.93980 1.01721 1.21492 1.01669 0.95797
0.95684 1.22194 0.92788 0.75920 0.82437 1.90646 1.68862 1.50353
1.36551 1.47646 1.06715 1.67652 1.09575 1.21623 0.80092 1.00049
1.03547 1.22374 0.94160 0.98497 0.84402 1.24082 1.00346 1.00130
0.96152 1.21525 0.90064 0.89715 0.95771 1.42545 1.39725 1.47651
1.06010 1.19673 1.09829 1.15723 0.91508 0.90114 1.25500 1.02432
1.02286 0.96314 1.69876 1.41205 1.42235 1.08292 0.85167 0.78562
0.77930 0.78653 1.18568 1.22661 1.22769 1.24025 0.98781 0.97201
0.99917 0.90377 0.91338 0.92855 0.92217 0.88126 0.96456 0.89429
0.91342 0.94024 0.89255 0.90817 0.89985 0.94329 0.90051 0.94250
0.89614 0.92444 0.94939 0.89151 0.86201 0.85491 0.92195 0.91375
0.79217 0.94547 0.93495 0.84223
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.21 9.73 71.98 0.70 -1.51 16
2 C -0.11 -2.43 5.54 30.60 0.17 -2.26 16
3 C 0.08 2.33 1.60 29.85 0.05 2.38 16
4 H 0.10 2.80 3.96 -2.39 -0.01 2.79 16
5 O -0.36 -11.94 8.77 -130.43 -1.14 -13.09 16
6 C 0.09 2.83 2.41 30.60 0.07 2.90 16
7 C -0.13 -2.98 5.45 30.59 0.17 -2.81 16
8 C -0.12 -2.61 5.92 30.59 0.18 -2.42 16
9 C -0.11 -2.32 5.92 30.60 0.18 -2.14 16
10 C -0.12 -3.08 5.92 30.59 0.18 -2.90 16
11 C -0.11 -3.26 5.57 30.59 0.17 -3.09 16
12 C 0.48 18.91 6.51 87.66 0.57 19.48 16
13 O -0.58 -29.28 16.10 15.51 0.25 -29.03 16
14 N -0.58 -21.08 2.22 -819.64 -1.82 -22.90 16
15 C 0.09 3.75 8.58 127.77 1.10 4.85 16
16 C 0.11 2.86 3.55 45.52 0.16 3.02 16
17 C -0.17 -4.56 7.16 31.12 0.22 -4.33 16
18 C 0.14 4.80 4.55 45.52 0.21 5.01 16
19 N -0.72 -34.44 3.58 -320.43 -1.15 -35.59 16
20 C -0.24 -12.56 9.98 84.04 0.84 -11.72 16
21 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16
22 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16
23 N -0.97 -60.23 13.06 21.65 0.28 -59.95 16
24 Si 0.97 46.24 29.55 68.60 2.03 48.26 16
25 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16
26 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16
27 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16
28 C -0.16 -4.23 6.42 31.12 0.20 -4.03 16
29 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16
30 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16
31 H 0.05 0.97 7.90 -2.39 -0.02 0.95 16
32 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16
33 H 0.10 1.76 5.64 -2.39 -0.01 1.75 16
34 H 0.02 0.69 7.72 -2.39 -0.02 0.67 16
35 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16
36 H 0.07 1.48 7.53 -2.39 -0.02 1.46 16
37 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16
38 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16
39 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16
40 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16
41 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16
42 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16
43 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16
44 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16
45 H 0.06 2.07 8.14 -2.39 -0.02 2.06 16
46 H 0.03 1.63 7.30 -2.39 -0.02 1.61 16
47 H 0.09 4.02 4.45 -2.38 -0.01 4.01 16
48 H 0.12 2.23 5.96 -2.39 -0.01 2.22 16
49 H 0.13 2.40 8.14 -2.39 -0.02 2.38 16
50 H 0.06 1.96 5.87 -2.39 -0.01 1.94 16
51 H 0.07 2.27 8.12 -2.39 -0.02 2.25 16
52 H 0.37 20.14 5.98 -92.71 -0.55 19.58 16
53 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16
54 H 0.05 1.49 6.23 -2.39 -0.01 1.48 16
55 H 0.14 2.36 8.14 -2.39 -0.02 2.34 16
Total: -1.00 -75.70 409.84 4.39 -71.30
By element:
Atomic # 1 Polarization: 43.94 SS G_CDS: 0.31 Total: 44.25 kcal
Atomic # 6 Polarization: -8.90 SS G_CDS: 5.64 Total: -3.26 kcal
Atomic # 7 Polarization: -115.75 SS G_CDS: -2.69 Total: -118.44 kcal
Atomic # 8 Polarization: -41.22 SS G_CDS: -0.89 Total: -42.12 kcal
Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.26 kcal
Total: -75.70 4.39 -71.30 kcal
The number of atoms in the molecule is 55
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001333070761.mol2 55
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -1.094 kcal
(2) G-P(sol) polarization free energy of solvation -75.696 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.790 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.394 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.303 kcal
(6) G-S(sol) free energy of system = (1) + (5) -72.397 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.27 seconds