Wall clock time and date at job start Wed Apr 1 2020 00:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47236 * 2 1 4 4 H 1.09008 * 109.46982 * 304.99787 * 3 2 1 5 5 O 1.42896 * 109.47362 * 64.99419 * 3 2 1 6 6 C 1.42904 * 114.00304 * 270.00555 * 5 3 2 7 7 C 1.52995 * 109.46689 * 269.99615 * 6 5 3 8 8 C 1.53006 * 109.46600 * 179.97438 * 7 6 5 9 9 C 1.52992 * 109.47414 * 60.00122 * 8 7 6 10 10 C 1.53001 * 109.47318 * 300.00006 * 9 8 7 11 11 C 1.52999 * 109.46910 * 149.99777 * 6 5 3 12 12 C 1.50695 * 109.47219 * 184.99864 * 3 2 1 13 13 O 1.21283 * 120.00233 * 244.99330 * 12 3 2 14 14 N 1.34777 * 120.00068 * 65.00146 * 12 3 2 15 15 C 1.46495 * 119.99981 * 359.97438 * 14 12 3 16 16 C 1.46509 * 120.00012 * 180.02562 * 14 12 3 17 17 C 1.53773 * 113.61526 * 63.55394 * 16 14 12 18 18 C 1.53786 * 87.07922 * 89.20109 * 17 16 14 19 19 N 1.46498 * 113.61312 * 270.79796 * 18 17 16 20 20 C 1.36942 * 119.99640 * 200.74953 * 19 18 17 21 21 H 1.08001 * 120.00072 * 359.97438 * 20 19 18 22 22 C 1.38817 * 119.99698 * 180.02562 * 20 19 18 23 23 N 1.31616 * 120.00313 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99833 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47391 * 59.99682 * 24 22 20 26 26 H 1.48502 * 109.47212 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.47100 * 299.99695 * 24 22 20 28 28 C 1.53779 * 87.17296 * 25.38905 * 18 17 16 29 29 H 1.08995 * 109.47304 * 300.00481 * 1 2 3 30 30 H 1.09001 * 109.47126 * 60.00507 * 1 2 3 31 31 H 1.09005 * 109.47089 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47520 * 240.00172 * 2 1 3 33 33 H 1.09001 * 109.47126 * 119.99493 * 2 1 3 34 34 H 1.09003 * 109.47027 * 29.99569 * 6 5 3 35 35 H 1.08993 * 109.47378 * 299.99759 * 7 6 5 36 36 H 1.09001 * 109.47214 * 60.00564 * 7 6 5 37 37 H 1.09003 * 109.47072 * 299.99927 * 8 7 6 38 38 H 1.09008 * 109.46849 * 180.02562 * 8 7 6 39 39 H 1.09001 * 109.47299 * 179.97438 * 9 8 7 40 40 H 1.09003 * 109.47160 * 59.99859 * 9 8 7 41 41 H 1.09003 * 109.46885 * 300.00021 * 10 9 8 42 42 H 1.08994 * 109.47149 * 180.02562 * 10 9 8 43 43 H 1.08999 * 109.47406 * 299.99640 * 11 6 5 44 44 H 1.08993 * 109.47428 * 60.00074 * 11 6 5 45 45 H 1.09000 * 109.47416 * 264.81593 * 15 14 12 46 46 H 1.09003 * 109.47432 * 24.82408 * 15 14 12 47 47 H 1.09009 * 109.47011 * 144.81810 * 15 14 12 48 48 H 1.09001 * 112.84725 * 292.36026 * 16 14 12 49 49 H 1.09003 * 113.61757 * 334.65837 * 17 16 14 50 50 H 1.08996 * 113.61696 * 203.74532 * 17 16 14 51 51 H 1.09001 * 113.61495 * 139.97920 * 18 17 16 52 52 H 0.96997 * 120.00745 * 20.75256 * 19 18 17 53 53 H 0.96995 * 120.00408 * 180.02562 * 23 22 20 54 54 H 1.09002 * 113.61455 * 89.15352 * 28 18 17 55 55 H 1.08993 * 113.61822 * 220.06130 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8419 5 8 1.6619 2.0815 1.2209 6 6 0.3926 2.7357 1.1658 7 6 0.5846 4.1836 0.7104 8 6 -0.7745 4.8839 0.6508 9 6 -1.4183 4.8669 2.0385 10 6 -1.6102 3.4189 2.4941 11 6 -0.2506 2.7187 2.5540 12 6 3.5419 1.4443 -0.1238 13 8 4.2250 1.8612 0.7875 14 7 4.1260 0.9828 -1.2473 15 6 3.3009 0.4789 -2.3479 16 6 5.5861 0.9840 -1.3674 17 6 6.2890 0.0745 -0.3460 18 6 6.1539 -1.0571 -1.3785 19 7 4.9032 -1.8111 -1.2624 20 6 4.8115 -3.0707 -1.7920 21 1 5.6609 -3.5079 -2.2956 22 6 3.6262 -3.7849 -1.6825 23 7 2.5908 -3.2519 -1.0692 24 14 3.5008 -5.5028 -2.4054 25 1 4.5110 -6.3838 -1.7663 26 1 2.1417 -6.0468 -2.1561 27 1 3.7501 -5.4436 -3.8682 28 6 6.1158 0.0365 -2.4591 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 -0.2540 2.2152 0.4593 35 1 1.2312 4.7040 1.4168 36 1 1.0428 4.1957 -0.2786 37 1 -1.4208 4.3633 -0.0560 38 1 -0.6378 5.9154 0.3258 39 1 -2.3863 5.3662 1.9961 40 1 -0.7720 5.3875 2.7453 41 1 -2.2565 2.8984 1.7873 42 1 -2.0693 3.4069 3.4826 43 1 -0.3873 1.6872 2.8785 44 1 0.3960 3.2391 3.2604 45 1 3.2078 -0.6040 -2.2660 46 1 2.3115 0.9336 -2.2981 47 1 3.7697 0.7323 -3.2989 48 1 6.0057 1.9887 -1.4188 49 1 5.7096 -0.0917 0.5622 50 1 7.3213 0.3605 -0.1443 51 1 7.0318 -1.7003 -1.4389 52 1 4.1401 -1.4183 -0.8106 53 1 1.7627 -3.7511 -0.9924 54 1 7.1007 0.3122 -2.8361 55 1 5.3969 -0.1602 -3.2543 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333070762.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:06 Heat of formation + Delta-G solvation = -67.558245 kcal Electronic energy + Delta-G solvation = -32520.972994 eV Core-core repulsion = 28558.225763 eV Total energy + Delta-G solvation = -3962.747231 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.79272 -40.41629 -39.08002 -37.47239 -35.86232 -35.16164 -33.67959 -31.82967 -31.71886 -30.80665 -28.35681 -28.11224 -26.47718 -25.71135 -24.41268 -23.57288 -23.10780 -22.69305 -21.27068 -20.65687 -19.43298 -19.15088 -18.42376 -17.67192 -17.16894 -16.74444 -16.62043 -16.46642 -15.98557 -15.48965 -15.40134 -15.15402 -14.89652 -14.82385 -14.78330 -14.60765 -13.96358 -13.88817 -13.62018 -13.46676 -13.32830 -13.19268 -13.10163 -13.05219 -12.91858 -12.74214 -12.65621 -12.50696 -12.44696 -12.15473 -12.07695 -11.98551 -11.74373 -11.67451 -11.61878 -11.46297 -11.44862 -11.11816 -11.01397 -10.79222 -10.60339 -10.22015 -9.48975 -8.90095 -7.83661 -5.11764 1.52135 1.53798 1.55362 1.58792 1.83822 2.61036 2.80448 3.43341 3.45962 3.71624 3.76705 3.78166 3.83703 3.86147 3.94947 3.98232 4.06132 4.25402 4.27364 4.28752 4.30077 4.36957 4.38027 4.42713 4.55854 4.56839 4.58811 4.63848 4.68195 4.78582 4.85136 4.90525 4.94216 5.02093 5.02942 5.10587 5.12069 5.16958 5.22583 5.23068 5.24794 5.28626 5.29401 5.31943 5.40771 5.44055 5.48020 5.52531 5.59649 5.75558 6.22083 6.37130 6.45956 7.19955 7.44306 8.17525 8.45923 9.36518 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013558 B = 0.003588 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.716196 B = 7801.891813 C = 9217.479411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.135 4.135 3 C 0.088 3.912 4 H 0.104 0.896 5 O -0.378 6.378 6 C 0.073 3.927 7 C -0.141 4.141 8 C -0.112 4.112 9 C -0.121 4.121 10 C -0.111 4.111 11 C -0.116 4.116 12 C 0.508 3.492 13 O -0.570 6.570 14 N -0.582 5.582 15 C 0.066 3.934 16 C 0.126 3.874 17 C -0.158 4.158 18 C 0.146 3.854 19 N -0.716 5.716 20 C -0.248 4.248 21 H 0.070 0.930 22 C -0.056 4.056 23 N -0.945 5.945 24 Si 0.963 3.037 25 H -0.291 1.291 26 H -0.298 1.298 27 H -0.280 1.280 28 C -0.155 4.155 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.054 0.946 32 H 0.091 0.909 33 H 0.034 0.966 34 H 0.084 0.916 35 H 0.053 0.947 36 H 0.057 0.943 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.057 0.943 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.061 0.939 44 H 0.056 0.944 45 H 0.069 0.931 46 H 0.082 0.918 47 H 0.085 0.915 48 H 0.086 0.914 49 H 0.033 0.967 50 H 0.110 0.890 51 H 0.060 0.940 52 H 0.381 0.619 53 H 0.250 0.750 54 H 0.116 0.884 55 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.979 16.019 -1.429 17.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C 0.027 3.973 4 H 0.121 0.879 5 O -0.296 6.296 6 C 0.016 3.984 7 C -0.179 4.179 8 C -0.149 4.149 9 C -0.158 4.158 10 C -0.148 4.148 11 C -0.154 4.154 12 C 0.296 3.704 13 O -0.449 6.449 14 N -0.315 5.315 15 C -0.076 4.076 16 C 0.023 3.977 17 C -0.197 4.197 18 C 0.036 3.964 19 N -0.356 5.356 20 C -0.380 4.380 21 H 0.088 0.912 22 C -0.250 4.250 23 N -0.594 5.594 24 Si 0.793 3.207 25 H -0.218 1.218 26 H -0.224 1.224 27 H -0.206 1.206 28 C -0.195 4.195 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.110 0.890 33 H 0.053 0.947 34 H 0.101 0.899 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.099 0.901 40 H 0.076 0.924 41 H 0.091 0.909 42 H 0.096 0.904 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.087 0.913 46 H 0.101 0.899 47 H 0.104 0.896 48 H 0.104 0.896 49 H 0.052 0.948 50 H 0.128 0.872 51 H 0.078 0.922 52 H 0.216 0.784 53 H 0.059 0.941 54 H 0.134 0.866 55 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.491 16.049 -0.871 17.733 hybrid contribution -0.102 -1.263 0.012 1.267 sum -7.593 14.787 -0.858 16.644 Atomic orbital electron populations 1.21816 0.93379 1.02384 1.02360 1.21977 0.98288 0.93549 1.03504 1.21907 0.90713 0.95355 0.89289 0.87862 1.88037 1.37951 1.70938 1.32711 1.22645 0.84122 0.92509 0.99086 1.22055 0.98966 0.95789 1.01041 1.21493 0.94660 1.00790 0.97985 1.21581 1.01362 0.96426 0.96441 1.21511 0.94928 0.95808 1.02590 1.21607 0.97260 1.01239 0.95270 1.20853 0.90800 0.77068 0.81641 1.90621 1.66071 1.48471 1.39734 1.47483 1.06415 1.61292 1.16347 1.22246 0.94736 1.01212 0.89429 1.21923 0.79253 0.98174 0.98338 1.23698 1.01182 0.97711 0.97130 1.21429 0.89502 0.91122 0.94376 1.42438 1.10987 1.15047 1.67174 1.19495 0.97250 0.92602 1.28621 0.91155 1.25299 0.96293 1.01270 1.02178 1.69744 1.02816 1.38321 1.48516 0.85397 0.75841 0.81164 0.78263 1.21826 1.22394 1.20578 1.24026 1.02201 0.96266 0.97041 0.91723 0.90765 0.92716 0.89036 0.94687 0.89870 0.92770 0.92386 0.90862 0.90766 0.90055 0.92399 0.90857 0.90432 0.92066 0.92469 0.91252 0.89924 0.89598 0.89606 0.94832 0.87197 0.92185 0.78446 0.94106 0.86613 0.90737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.01 8.58 71.98 0.62 -3.39 16 2 C -0.14 -4.85 5.32 30.59 0.16 -4.68 16 3 C 0.09 2.95 1.82 29.85 0.05 3.00 16 4 H 0.10 2.79 6.63 -2.38 -0.02 2.78 16 5 O -0.38 -13.00 9.10 -129.99 -1.18 -14.18 16 6 C 0.07 1.82 1.37 30.59 0.04 1.86 16 7 C -0.14 -3.07 5.53 30.59 0.17 -2.90 16 8 C -0.11 -1.71 5.92 30.59 0.18 -1.53 16 9 C -0.12 -1.71 5.92 30.59 0.18 -1.53 16 10 C -0.11 -1.74 5.93 30.61 0.18 -1.55 16 11 C -0.12 -2.61 5.45 30.61 0.17 -2.44 16 12 C 0.51 20.03 6.79 87.66 0.60 20.62 16 13 O -0.57 -26.62 15.49 15.95 0.25 -26.38 16 14 N -0.58 -20.60 2.10 -819.31 -1.72 -22.32 16 15 C 0.07 2.09 7.22 127.77 0.92 3.02 16 16 C 0.13 4.25 4.13 45.57 0.19 4.44 16 17 C -0.16 -5.89 7.12 31.12 0.22 -5.67 16 18 C 0.15 5.75 4.54 45.52 0.21 5.96 16 19 N -0.72 -34.54 3.91 -320.43 -1.25 -35.80 16 20 C -0.25 -13.02 9.98 84.03 0.84 -12.18 16 21 H 0.07 3.60 7.83 -2.91 -0.02 3.58 16 22 C -0.06 -3.01 5.50 84.86 0.47 -2.54 16 23 N -0.94 -52.12 13.06 21.65 0.28 -51.84 16 24 Si 0.96 44.08 29.55 68.60 2.03 46.11 16 25 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 26 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 27 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 28 C -0.15 -4.80 7.18 31.18 0.22 -4.57 16 29 H 0.06 1.67 5.54 -2.39 -0.01 1.66 16 30 H 0.07 1.67 8.01 -2.39 -0.02 1.66 16 31 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 32 H 0.09 3.62 5.17 -2.39 -0.01 3.61 16 33 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.08 1.83 5.23 -2.39 -0.01 1.82 16 35 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.06 1.27 7.96 -2.39 -0.02 1.25 16 37 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 39 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.06 1.46 7.88 -2.39 -0.02 1.45 16 44 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 45 H 0.07 2.80 5.16 -2.39 -0.01 2.79 16 46 H 0.08 2.20 5.76 -2.39 -0.01 2.18 16 47 H 0.09 2.33 6.80 -2.38 -0.02 2.32 16 48 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 49 H 0.03 1.52 7.21 -2.39 -0.02 1.51 16 50 H 0.11 3.42 8.14 -2.39 -0.02 3.40 16 51 H 0.06 2.34 8.12 -2.39 -0.02 2.32 16 52 H 0.38 19.48 5.66 -92.71 -0.52 18.95 16 53 H 0.25 13.61 8.31 -92.71 -0.77 12.84 16 54 H 0.12 2.80 8.14 -2.39 -0.02 2.78 16 55 H 0.07 2.41 6.00 -2.39 -0.01 2.39 16 Total: -1.00 -66.61 405.94 4.16 -62.45 By element: Atomic # 1 Polarization: 45.71 SS G_CDS: 0.35 Total: 46.06 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: 5.42 Total: -4.10 kcal Atomic # 7 Polarization: -107.26 SS G_CDS: -2.69 Total: -109.96 kcal Atomic # 8 Polarization: -39.62 SS G_CDS: -0.94 Total: -40.56 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -66.61 4.16 -62.45 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333070762.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.110 kcal (2) G-P(sol) polarization free energy of solvation -66.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds