Wall clock time and date at job start Tue Mar 31 2020 22:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53005 * 109.46827 * 2 1 4 4 H 1.08998 * 109.47000 * 55.96351 * 3 2 1 5 5 C 1.50702 * 109.46837 * 175.96631 * 3 2 1 6 6 O 1.21269 * 120.00082 * 102.46781 * 5 3 2 7 7 N 1.34777 * 119.99754 * 282.46496 * 5 3 2 8 8 C 1.46931 * 120.63001 * 354.56718 * 7 5 3 9 9 C 1.52755 * 109.00862 * 233.58132 * 8 7 5 10 10 C 1.53038 * 109.38469 * 305.59165 * 9 8 7 11 11 C 1.50702 * 109.46066 * 181.26038 * 10 9 8 12 12 H 1.08001 * 119.99483 * 239.92549 * 11 10 9 13 13 C 1.37876 * 119.99980 * 59.93164 * 11 10 9 14 14 N 1.31514 * 120.00097 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99768 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47124 * 90.00126 * 15 13 11 17 17 H 1.48502 * 109.46672 * 209.99725 * 15 13 11 18 18 H 1.48494 * 109.47193 * 329.99454 * 15 13 11 19 19 C 1.53038 * 109.53879 * 61.23845 * 10 9 8 20 20 C 1.46920 * 120.62922 * 174.84277 * 7 5 3 21 21 N 1.46902 * 109.46854 * 295.96059 * 3 2 1 22 22 C 1.47010 * 111.00477 * 306.93049 * 21 3 2 23 23 C 1.53091 * 109.25997 * 177.61043 * 22 21 3 24 24 O 1.43101 * 109.28744 * 56.84655 * 23 22 21 25 25 C 1.43009 * 113.68620 * 301.36413 * 24 23 22 26 26 H 1.09006 * 109.50804 * 298.68555 * 25 24 23 27 27 C 1.53003 * 109.50704 * 178.60167 * 25 24 23 28 28 C 1.52999 * 109.47057 * 65.08382 * 27 25 24 29 29 C 1.47014 * 110.99692 * 183.28979 * 21 3 2 30 30 H 1.09001 * 109.46996 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46579 * 299.99650 * 1 2 3 32 32 H 1.08995 * 109.47212 * 60.00187 * 1 2 3 33 33 H 1.09000 * 109.46579 * 240.00350 * 2 1 3 34 34 H 1.08995 * 109.47212 * 119.99813 * 2 1 3 35 35 H 1.09000 * 109.58822 * 353.42066 * 8 7 5 36 36 H 1.09001 * 109.58498 * 113.83999 * 8 7 5 37 37 H 1.08997 * 109.56669 * 185.55607 * 9 8 7 38 38 H 1.09006 * 109.38435 * 65.51664 * 9 8 7 39 39 H 1.09002 * 109.45667 * 301.21933 * 10 9 8 40 40 H 0.96998 * 119.99642 * 180.02562 * 14 13 11 41 41 H 1.09000 * 109.49815 * 178.69084 * 19 10 9 42 42 H 1.08992 * 109.52612 * 58.60530 * 19 10 9 43 43 H 1.09000 * 109.59208 * 246.15479 * 20 7 5 44 44 H 1.09000 * 109.58867 * 6.58635 * 20 7 5 45 45 H 1.09004 * 109.50448 * 297.54331 * 22 21 3 46 46 H 1.09004 * 109.50729 * 57.67109 * 22 21 3 47 47 H 1.09003 * 109.50938 * 176.78440 * 23 22 21 48 48 H 1.09004 * 109.50680 * 296.91062 * 23 22 21 49 49 H 1.08996 * 109.47164 * 185.08913 * 27 25 24 50 50 H 1.09001 * 109.46740 * 305.08503 * 27 25 24 51 51 H 1.09000 * 109.46970 * 180.02562 * 28 27 25 52 52 H 1.08999 * 109.47292 * 299.99831 * 28 27 25 53 53 H 1.09001 * 109.47246 * 60.00432 * 28 27 25 54 54 H 1.09000 * 109.50669 * 62.46147 * 29 21 3 55 55 H 1.08995 * 109.54731 * 302.35148 * 29 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6188 1.9768 0.8516 5 6 3.5437 1.4437 0.0999 6 8 4.2169 1.6468 -0.8881 7 7 4.1403 1.2191 1.2874 8 6 3.3415 1.0896 2.5139 9 6 3.8711 2.0703 3.5584 10 6 5.3709 1.8398 3.7574 11 6 5.8890 2.7856 4.8100 12 1 6.6652 3.4950 4.5636 13 6 5.3721 2.7453 6.0876 14 7 4.4266 1.8818 6.3875 15 14 6.0138 3.9182 7.3922 16 1 5.2102 5.1669 7.3736 17 1 5.9052 3.2795 8.7285 18 1 7.4360 4.2404 7.1117 19 6 6.1067 2.0914 2.4393 20 6 5.6021 1.1051 1.3811 21 7 1.6316 2.1063 -1.2453 22 6 2.0425 1.3227 -2.4193 23 6 1.5461 2.0182 -3.6896 24 8 2.0549 3.3552 -3.7259 25 6 1.6733 4.1460 -2.5971 26 1 0.5872 4.2333 -2.5643 27 6 2.2943 5.5393 -2.7159 28 6 1.7036 6.2591 -3.9299 29 6 2.1709 3.4721 -1.3157 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.2981 1.3177 2.2962 36 1 3.4230 0.0725 2.8972 37 1 3.3505 1.9138 4.5032 38 1 3.7023 3.0910 3.2148 39 1 5.5409 0.8119 4.0777 40 1 4.0627 1.8537 7.2862 41 1 7.1772 1.9496 2.5874 42 1 5.9175 3.1115 2.1054 43 1 5.8717 0.0894 1.6703 44 1 6.0498 1.3437 0.4163 45 1 3.1297 1.2494 -2.4456 46 1 1.6111 0.3234 -2.3591 47 1 1.8972 1.4715 -4.5648 48 1 0.4564 2.0436 -3.6885 49 1 2.0785 6.1114 -1.8137 50 1 3.3735 5.4467 -2.8380 51 1 2.1464 7.2515 -4.0148 52 1 1.9195 5.6870 -4.8322 53 1 0.6244 6.3517 -3.8079 54 1 3.2602 3.4332 -1.3243 55 1 1.8340 4.0423 -0.4501 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001417710957.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:04 Heat of formation + Delta-G solvation = -100.693695 kcal Electronic energy + Delta-G solvation = -32205.052775 eV Core-core repulsion = 28240.868683 eV Total energy + Delta-G solvation = -3964.184092 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.02434 -40.25874 -38.62521 -37.12727 -35.45140 -34.91390 -33.89645 -32.89589 -31.81644 -30.92597 -29.32270 -28.01761 -26.41600 -25.21402 -24.63435 -23.91036 -23.12704 -22.25459 -21.60011 -20.95670 -19.76928 -18.70482 -18.09064 -17.67747 -17.51335 -16.78915 -16.51397 -16.39878 -16.13701 -15.77347 -15.48005 -15.32417 -14.93329 -14.79689 -14.65906 -14.50035 -14.25755 -14.21223 -14.12175 -13.81418 -13.40669 -13.23338 -13.04997 -12.94120 -12.86453 -12.82611 -12.57032 -12.48586 -12.20000 -12.18563 -12.10182 -11.97959 -11.90213 -11.81849 -11.62480 -11.50468 -11.29309 -11.23908 -11.03896 -10.81732 -10.53436 -10.41791 -9.58297 -9.20520 -8.09893 -6.22878 1.39847 1.42310 1.50635 1.51619 2.04232 2.42613 2.65894 2.86586 3.16705 3.44124 3.69770 3.86095 3.95163 4.01141 4.07514 4.13537 4.17035 4.21885 4.29153 4.36115 4.39623 4.44875 4.47047 4.47952 4.53563 4.56572 4.59541 4.65715 4.69223 4.76043 4.80855 4.86303 4.93424 4.97170 5.00130 5.08715 5.10067 5.15123 5.17254 5.20077 5.24143 5.26662 5.39985 5.42180 5.49989 5.52482 5.63183 5.77993 5.88253 5.95732 6.10595 6.27642 6.37109 6.47580 6.85712 7.11848 7.44851 8.93496 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013753 B = 0.003108 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.371372 B = 9005.511821 C = 9879.048510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.110 4.110 3 C 0.069 3.931 4 H 0.112 0.888 5 C 0.483 3.517 6 O -0.578 6.578 7 N -0.599 5.599 8 C 0.115 3.885 9 C -0.115 4.115 10 C 0.048 3.952 11 C -0.537 4.537 12 H 0.044 0.956 13 C 0.020 3.980 14 N -0.909 5.909 15 Si 0.947 3.053 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.274 1.274 19 C -0.112 4.112 20 C 0.117 3.883 21 N -0.494 5.494 22 C -0.005 4.005 23 C 0.068 3.932 24 O -0.398 6.398 25 C 0.103 3.897 26 H 0.075 0.925 27 C -0.118 4.118 28 C -0.141 4.141 29 C 0.009 3.991 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.098 0.902 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.024 0.976 39 H 0.005 0.995 40 H 0.262 0.738 41 H 0.060 0.940 42 H 0.037 0.963 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.051 0.949 46 H 0.100 0.900 47 H 0.108 0.892 48 H 0.068 0.932 49 H 0.087 0.913 50 H 0.052 0.948 51 H 0.063 0.937 52 H 0.051 0.949 53 H 0.063 0.937 54 H 0.035 0.965 55 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.554 -1.312 -16.539 20.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.148 4.148 3 C -0.043 4.043 4 H 0.130 0.870 5 C 0.271 3.729 6 O -0.459 6.459 7 N -0.331 5.331 8 C -0.007 4.007 9 C -0.154 4.154 10 C 0.030 3.970 11 C -0.575 4.575 12 H 0.062 0.938 13 C -0.179 4.179 14 N -0.548 5.548 15 Si 0.773 3.227 16 H -0.203 1.203 17 H -0.207 1.207 18 H -0.199 1.199 19 C -0.150 4.150 20 C -0.006 4.006 21 N -0.217 5.217 22 C -0.132 4.132 23 C -0.009 4.009 24 O -0.317 6.317 25 C 0.046 3.954 26 H 0.092 0.908 27 C -0.156 4.156 28 C -0.198 4.198 29 C -0.119 4.119 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.116 0.884 36 H 0.088 0.912 37 H 0.101 0.899 38 H 0.043 0.957 39 H 0.023 0.977 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.055 0.945 43 H 0.089 0.911 44 H 0.093 0.907 45 H 0.069 0.931 46 H 0.118 0.882 47 H 0.126 0.874 48 H 0.086 0.914 49 H 0.105 0.895 50 H 0.071 0.929 51 H 0.082 0.918 52 H 0.070 0.930 53 H 0.082 0.918 54 H 0.053 0.947 55 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.722 -1.171 -17.048 20.723 hybrid contribution 1.695 0.494 1.509 2.323 sum -10.027 -0.677 -15.539 18.506 Atomic orbital electron populations 1.21614 0.92450 1.02261 1.02862 1.21600 0.98765 0.91448 1.03032 1.22100 0.87711 0.99353 0.95157 0.86990 1.22464 0.92794 0.75376 0.82239 1.90573 1.67181 1.51490 1.36665 1.48456 1.07459 1.69295 1.07898 1.21878 0.94986 1.00257 0.83606 1.21714 0.99263 0.96040 0.98349 1.18576 0.92307 0.95273 0.90873 1.21521 1.20661 1.19397 0.95922 0.93768 1.25594 0.95284 0.96932 1.00071 1.69926 1.27700 1.36599 1.20615 0.85731 0.78750 0.79354 0.78850 1.20280 1.20698 1.19940 1.21833 0.99764 0.97520 0.95914 1.21544 0.80309 0.99463 0.99310 1.62786 1.55931 1.01859 1.01082 1.23156 1.00887 0.98508 0.90671 1.22751 0.98816 0.82175 0.97154 1.87967 1.76130 1.24043 1.43606 1.22156 0.98729 0.90756 0.83797 0.90764 1.21557 1.00194 0.93266 1.00576 1.21639 1.01088 0.99913 0.97150 1.22966 0.98696 0.90370 0.99869 0.91487 0.92332 0.91656 0.91272 0.90679 0.88431 0.91165 0.89921 0.95692 0.97719 0.92829 0.92116 0.94459 0.91125 0.90708 0.93094 0.88212 0.87411 0.91360 0.89491 0.92946 0.91808 0.93023 0.91829 0.94688 0.89937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.14 9.79 71.98 0.70 -1.43 16 2 C -0.11 -2.22 4.79 30.60 0.15 -2.07 16 3 C 0.07 1.73 1.47 44.17 0.06 1.79 16 4 H 0.11 2.74 6.44 -2.39 -0.02 2.73 16 5 C 0.48 15.69 6.13 87.66 0.54 16.23 16 6 O -0.58 -22.03 11.31 -3.00 -0.03 -22.07 16 7 N -0.60 -20.34 2.98 -819.74 -2.44 -22.78 16 8 C 0.11 3.79 5.52 86.22 0.48 4.27 16 9 C -0.11 -4.95 5.14 30.53 0.16 -4.80 16 10 C 0.05 2.29 2.07 -11.51 -0.02 2.27 16 11 C -0.54 -28.81 8.56 25.60 0.22 -28.59 16 12 H 0.04 2.39 7.74 -2.91 -0.02 2.37 16 13 C 0.02 1.09 5.30 84.65 0.45 1.54 16 14 N -0.91 -49.25 11.30 21.45 0.24 -49.01 16 15 Si 0.95 42.45 29.54 68.60 2.03 44.48 16 16 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 17 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 18 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 19 C -0.11 -4.64 5.30 30.67 0.16 -4.48 16 20 C 0.12 4.20 6.44 86.37 0.56 4.76 16 21 N -0.49 -12.06 4.19 -874.37 -3.66 -15.72 16 22 C 0.00 -0.11 4.85 86.31 0.42 0.31 16 23 C 0.07 1.41 7.01 72.01 0.50 1.91 16 24 O -0.40 -10.29 10.02 -148.98 -1.49 -11.79 16 25 C 0.10 2.42 2.80 30.63 0.09 2.50 16 26 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 27 C -0.12 -2.50 5.65 30.60 0.17 -2.33 16 28 C -0.14 -2.47 9.81 71.98 0.71 -1.76 16 29 C 0.01 0.25 4.50 86.32 0.39 0.64 16 30 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.06 1.06 7.72 -2.39 -0.02 1.04 16 33 H 0.07 1.41 6.03 -2.39 -0.01 1.39 16 34 H 0.07 1.52 7.31 -2.39 -0.02 1.50 16 35 H 0.10 2.66 5.36 -2.39 -0.01 2.65 16 36 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.08 3.98 6.03 -2.39 -0.01 3.97 16 38 H 0.02 1.10 8.14 -2.38 -0.02 1.08 16 39 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 40 H 0.26 13.56 8.31 -92.71 -0.77 12.79 16 41 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 42 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 44 H 0.07 2.75 7.00 -2.39 -0.02 2.73 16 45 H 0.05 1.60 5.46 -2.38 -0.01 1.59 16 46 H 0.10 1.99 5.98 -2.38 -0.01 1.97 16 47 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 48 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 49 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 50 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 51 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 52 H 0.05 1.01 7.83 -2.39 -0.02 0.99 16 53 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 54 H 0.03 1.21 5.81 -2.39 -0.01 1.20 16 55 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -61.84 403.07 1.21 -60.63 By element: Atomic # 1 Polarization: 24.66 SS G_CDS: 0.85 Total: 25.51 kcal Atomic # 6 Polarization: -14.97 SS G_CDS: 5.73 Total: -9.24 kcal Atomic # 7 Polarization: -81.65 SS G_CDS: -5.86 Total: -87.51 kcal Atomic # 8 Polarization: -32.33 SS G_CDS: -1.53 Total: -33.86 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -61.84 1.21 -60.63 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417710957.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.067 kcal (2) G-P(sol) polarization free energy of solvation -61.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds