Wall clock time and date at job start Tue Mar 31 2020 22:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47421 * 2 1 4 4 H 1.09001 * 109.47227 * 304.99949 * 3 2 1 5 5 C 1.53001 * 109.47530 * 64.99754 * 3 2 1 6 6 C 1.52994 * 109.47530 * 179.97438 * 5 3 2 7 7 C 1.52995 * 109.47530 * 300.00226 * 6 5 3 8 8 C 1.53006 * 109.47222 * 59.99476 * 7 6 5 9 9 C 1.52995 * 109.47530 * 184.99980 * 3 2 1 10 10 H 1.08999 * 109.47339 * 59.99679 * 9 3 2 11 11 O 1.42901 * 109.47000 * 299.99958 * 9 3 2 12 12 C 1.42903 * 114.00267 * 149.99588 * 11 9 3 13 13 C 1.50696 * 109.47284 * 179.97438 * 12 11 9 14 14 O 1.21284 * 120.00096 * 0.02562 * 13 12 11 15 15 N 1.34774 * 119.99838 * 180.02562 * 13 12 11 16 16 C 1.46506 * 120.00072 * 180.02562 * 15 13 12 17 17 C 1.52997 * 109.47289 * 180.02562 * 16 15 13 18 18 H 1.08998 * 112.85254 * 43.80385 * 17 16 15 19 19 C 1.53781 * 113.61399 * 174.99933 * 17 16 15 20 20 C 1.53785 * 87.08078 * 139.97945 * 19 17 16 21 21 H 1.09001 * 113.61294 * 89.11719 * 20 19 17 22 22 N 1.46499 * 113.61514 * 220.01923 * 20 19 17 23 23 C 1.36933 * 120.00214 * 205.00234 * 22 20 19 24 24 H 1.08003 * 119.99908 * 359.97438 * 23 22 20 25 25 C 1.38817 * 120.00394 * 180.02562 * 23 22 20 26 26 N 1.31614 * 119.99624 * 359.97438 * 25 23 22 27 27 Si 1.86792 * 120.00154 * 179.97438 * 25 23 22 28 28 H 1.48508 * 109.47390 * 359.97438 * 27 25 23 29 29 H 1.48493 * 109.47341 * 119.99763 * 27 25 23 30 30 H 1.48508 * 109.47101 * 239.99665 * 27 25 23 31 31 C 1.53785 * 113.61053 * 272.49703 * 17 16 15 32 32 H 1.09000 * 109.46983 * 60.00045 * 1 2 3 33 33 H 1.08999 * 109.47480 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.47428 * 300.00488 * 1 2 3 35 35 H 1.09002 * 109.47179 * 239.99963 * 2 1 3 36 36 H 1.09000 * 109.46983 * 119.99955 * 2 1 3 37 37 H 1.09001 * 109.46707 * 59.99876 * 5 3 2 38 38 H 1.09004 * 109.47030 * 300.00210 * 5 3 2 39 39 H 1.08999 * 109.47071 * 179.97438 * 6 5 3 40 40 H 1.09001 * 109.47227 * 60.00195 * 6 5 3 41 41 H 1.09001 * 109.46840 * 300.00205 * 7 6 5 42 42 H 1.08994 * 109.47519 * 179.97438 * 7 6 5 43 43 H 1.08992 * 109.47558 * 180.02562 * 8 7 6 44 44 H 1.09001 * 109.46352 * 60.00114 * 8 7 6 45 45 H 1.09004 * 109.46926 * 60.00001 * 12 11 9 46 46 H 1.09001 * 109.47395 * 300.00397 * 12 11 9 47 47 H 0.97001 * 120.00676 * 359.97438 * 15 13 12 48 48 H 1.09001 * 109.47060 * 300.00359 * 16 15 13 49 49 H 1.09004 * 109.47073 * 59.99848 * 16 15 13 50 50 H 1.08996 * 113.61569 * 254.53055 * 19 17 16 51 51 H 1.09004 * 113.60977 * 25.34912 * 19 17 16 52 52 H 0.97002 * 120.00008 * 24.99739 * 22 20 19 53 53 H 0.97003 * 120.00357 * 180.02562 * 26 25 23 54 54 H 1.08995 * 113.61917 * 334.56530 * 31 17 16 55 55 H 1.08995 * 113.61487 * 105.47453 * 31 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 1.6353 2.1266 1.3073 6 6 2.1459 3.5688 1.3076 7 6 3.6707 3.5701 1.1822 8 6 4.0755 2.8859 -0.1252 9 6 3.5648 1.4443 -0.1257 10 1 3.8532 0.9569 -1.0570 11 8 4.1346 0.7376 0.9779 12 6 5.3746 0.0936 0.6781 13 6 5.8819 -0.6163 1.9068 14 8 5.2443 -0.5752 2.9376 15 7 7.0443 -1.2968 1.8600 16 6 7.5374 -1.9874 3.0544 17 6 8.8656 -2.6757 2.7337 18 1 9.5402 -2.0451 2.1546 19 6 9.5312 -3.3300 3.9559 20 6 9.9076 -4.4969 3.0276 21 1 10.8675 -4.3652 2.5281 22 7 9.7665 -5.8138 3.6537 23 6 10.5071 -6.8715 3.1979 24 1 11.1950 -6.7350 2.3765 25 6 10.3729 -8.1196 3.7907 26 7 9.5342 -8.2860 4.7912 27 14 11.3827 -9.5626 3.1684 28 1 12.2431 -9.1162 2.0433 29 1 12.2349 -10.0813 4.2682 30 1 10.4723 -10.6377 2.6984 31 6 8.7021 -4.0939 2.1619 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 -0.3634 0.5139 0.8899 35 1 1.8933 -0.5138 -0.8900 36 1 1.8933 -0.5138 0.8900 37 1 2.0699 1.5875 2.1491 38 1 0.5490 2.1253 1.3968 39 1 1.8571 4.0563 2.2387 40 1 1.7117 4.1081 0.4657 41 1 4.1049 3.0308 2.0240 42 1 4.0344 4.5976 1.1819 43 1 5.1618 2.8864 -0.2143 44 1 3.6412 3.4253 -0.9670 45 1 6.1042 0.8393 0.3624 46 1 5.2240 -0.6294 -0.1236 47 1 7.5542 -1.3300 1.0355 48 1 7.6875 -1.2644 3.8562 49 1 6.8079 -2.7334 3.3698 50 1 10.3914 -2.7769 4.3329 51 1 8.8272 -3.6048 4.7414 52 1 9.1484 -5.9365 4.3911 53 1 9.4407 -9.1580 5.2058 54 1 7.7715 -4.5789 2.4565 55 1 8.8932 -4.1575 1.0907 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479294062.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:21 Heat of formation + Delta-G solvation = -103.603956 kcal Electronic energy + Delta-G solvation = -29440.303278 eV Core-core repulsion = 25475.992988 eV Total energy + Delta-G solvation = -3964.310290 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.08462 -40.41254 -39.67205 -37.07555 -36.02276 -35.00726 -34.79327 -32.26025 -31.19599 -30.19066 -29.42357 -27.43700 -26.45272 -25.66771 -24.77274 -23.27946 -22.48807 -21.84067 -21.48170 -20.54521 -20.46815 -19.06251 -18.26625 -17.63120 -17.19115 -16.84924 -16.46261 -16.39243 -16.21918 -15.83662 -15.52546 -15.32660 -15.15792 -14.98439 -14.71784 -14.47340 -14.17733 -13.99932 -13.68704 -13.49861 -13.39314 -13.23494 -13.06231 -12.94075 -12.92060 -12.72175 -12.66129 -12.39449 -12.20335 -12.15767 -12.05617 -11.92188 -11.59405 -11.57263 -11.54944 -11.40560 -11.26933 -11.09836 -10.85111 -10.77622 -10.72808 -10.31374 -10.07240 -8.97646 -7.94619 -5.22993 1.47318 1.48116 1.58186 1.60668 1.87742 2.56674 3.05877 3.37541 3.64736 3.72377 3.75677 3.79874 3.85371 3.91639 3.96494 4.19148 4.23090 4.25374 4.25909 4.30727 4.35856 4.37024 4.43293 4.49019 4.53479 4.56553 4.58773 4.64275 4.77008 4.78553 4.87757 4.91543 4.97109 4.98107 4.99394 5.05627 5.07426 5.17243 5.23030 5.26287 5.31073 5.34342 5.35921 5.36404 5.43447 5.47301 5.52426 5.53522 5.64310 5.74233 6.24139 6.27769 6.61321 7.27362 7.32999 8.11710 8.33149 9.29183 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.020370 B = 0.001688 C = 0.001621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.240456 B =16587.353562 C =17266.087174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.078 4.078 4 H 0.100 0.900 5 C -0.111 4.111 6 C -0.116 4.116 7 C -0.116 4.116 8 C -0.137 4.137 9 C 0.086 3.914 10 H 0.081 0.919 11 O -0.376 6.376 12 C 0.046 3.954 13 C 0.505 3.495 14 O -0.579 6.579 15 N -0.710 5.710 16 C 0.140 3.860 17 C -0.093 4.093 18 H 0.126 0.874 19 C -0.139 4.139 20 C 0.143 3.857 21 H 0.083 0.917 22 N -0.731 5.731 23 C -0.240 4.240 24 H 0.081 0.919 25 C -0.082 4.082 26 N -0.973 5.973 27 Si 0.974 3.026 28 H -0.262 1.262 29 H -0.295 1.295 30 H -0.296 1.296 31 C -0.153 4.153 32 H 0.066 0.934 33 H 0.049 0.951 34 H 0.052 0.948 35 H 0.065 0.935 36 H 0.041 0.959 37 H 0.039 0.961 38 H 0.066 0.934 39 H 0.055 0.945 40 H 0.075 0.925 41 H 0.041 0.959 42 H 0.066 0.934 43 H 0.069 0.931 44 H 0.090 0.910 45 H 0.107 0.893 46 H 0.103 0.897 47 H 0.419 0.581 48 H 0.062 0.938 49 H 0.042 0.958 50 H 0.079 0.921 51 H 0.064 0.936 52 H 0.371 0.629 53 H 0.250 0.750 54 H 0.053 0.947 55 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.889 28.007 -16.869 35.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.096 4.096 4 H 0.118 0.882 5 C -0.149 4.149 6 C -0.153 4.153 7 C -0.154 4.154 8 C -0.175 4.175 9 C 0.029 3.971 10 H 0.099 0.901 11 O -0.295 6.295 12 C -0.033 4.033 13 C 0.292 3.708 14 O -0.458 6.458 15 N -0.365 5.365 16 C 0.016 3.984 17 C -0.112 4.112 18 H 0.144 0.856 19 C -0.178 4.178 20 C 0.033 3.967 21 H 0.101 0.899 22 N -0.368 5.368 23 C -0.372 4.372 24 H 0.099 0.901 25 C -0.274 4.274 26 N -0.624 5.624 27 Si 0.803 3.197 28 H -0.186 1.186 29 H -0.222 1.222 30 H -0.224 1.224 31 C -0.193 4.193 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.094 0.906 41 H 0.060 0.940 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.108 0.892 45 H 0.124 0.876 46 H 0.121 0.879 47 H 0.256 0.744 48 H 0.080 0.920 49 H 0.061 0.939 50 H 0.097 0.903 51 H 0.082 0.918 52 H 0.203 0.797 53 H 0.058 0.942 54 H 0.071 0.929 55 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.280 27.919 -16.061 34.839 hybrid contribution 0.451 -1.458 0.245 1.546 sum -12.829 26.461 -15.816 33.390 Atomic orbital electron populations 1.21800 0.95276 1.01601 1.02159 1.21486 0.96310 0.96349 1.01400 1.21299 0.93043 0.96286 0.98947 0.88178 1.21514 1.00291 0.95766 0.97310 1.21509 0.95613 0.96268 1.01928 1.21408 0.96125 1.00047 0.97806 1.22026 1.01424 0.95468 0.98577 1.22394 0.93513 0.92109 0.89077 0.90111 1.88066 1.35584 1.68934 1.36950 1.22327 0.88902 0.97995 0.94075 1.21013 0.80714 0.78837 0.90279 1.90720 1.58083 1.62474 1.34557 1.45773 1.23022 1.52228 1.15428 1.21192 0.94593 0.95098 0.87537 1.22468 0.95366 0.95044 0.98308 0.85648 1.23342 1.00364 0.97254 0.96872 1.21976 0.96785 0.83713 0.94188 0.89896 1.42658 1.48708 1.05658 1.39785 1.19790 1.16045 0.89111 1.12264 0.90114 1.25622 1.01690 1.00733 0.99360 1.69836 1.41578 1.23295 1.27694 0.85058 0.77803 0.79300 0.77519 1.18625 1.22245 1.22364 1.23720 0.99835 0.95475 1.00313 0.91510 0.93156 0.92893 0.91598 0.93998 0.94205 0.91558 0.92636 0.90642 0.94001 0.91524 0.91244 0.89169 0.87551 0.87922 0.74417 0.91961 0.93936 0.90258 0.91774 0.79745 0.94161 0.92858 0.91063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.67 71.98 0.70 -1.31 16 2 C -0.12 -1.82 5.19 30.59 0.16 -1.66 16 3 C -0.08 -1.02 2.02 -10.80 -0.02 -1.04 16 4 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 5 C -0.11 -1.80 4.81 30.59 0.15 -1.65 16 6 C -0.12 -1.57 5.92 30.59 0.18 -1.38 16 7 C -0.12 -1.67 5.78 30.59 0.18 -1.50 16 8 C -0.14 -1.47 5.63 30.58 0.17 -1.29 16 9 C 0.09 1.12 2.35 30.57 0.07 1.19 16 10 H 0.08 0.72 7.79 -2.39 -0.02 0.70 16 11 O -0.38 -7.61 7.59 -129.94 -0.99 -8.60 16 12 C 0.05 0.72 6.23 71.23 0.44 1.16 16 13 C 0.50 12.25 7.91 87.66 0.69 12.94 16 14 O -0.58 -20.83 16.50 16.00 0.26 -20.57 16 15 N -0.71 -13.99 5.56 -463.05 -2.57 -16.56 16 16 C 0.14 3.50 5.51 86.38 0.48 3.98 16 17 C -0.09 -2.19 3.75 -10.27 -0.04 -2.22 16 18 H 0.13 2.15 8.14 -2.39 -0.02 2.13 16 19 C -0.14 -4.21 7.39 31.12 0.23 -3.98 16 20 C 0.14 5.31 4.48 45.52 0.20 5.51 16 21 H 0.08 2.95 8.10 -2.39 -0.02 2.93 16 22 N -0.73 -36.80 5.40 -320.43 -1.73 -38.53 16 23 C -0.24 -13.26 9.97 84.04 0.84 -12.42 16 24 H 0.08 4.21 7.83 -2.91 -0.02 4.18 16 25 C -0.08 -4.76 5.50 84.86 0.47 -4.29 16 26 N -0.97 -60.55 13.06 21.65 0.28 -60.27 16 27 Si 0.97 46.20 29.55 68.60 2.03 48.23 16 28 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 29 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 30 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 31 C -0.15 -4.72 7.43 31.12 0.23 -4.49 16 32 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.05 0.73 6.57 -2.39 -0.02 0.72 16 35 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.04 0.91 7.84 -2.39 -0.02 0.89 16 37 H 0.04 0.92 7.68 -2.39 -0.02 0.91 16 38 H 0.07 0.96 6.57 -2.38 -0.02 0.95 16 39 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.04 0.86 7.68 -2.39 -0.02 0.84 16 42 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.07 0.65 7.86 -2.39 -0.02 0.64 16 44 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 45 H 0.11 0.98 7.86 -2.38 -0.02 0.96 16 46 H 0.10 1.06 8.09 -2.39 -0.02 1.04 16 47 H 0.42 5.04 8.47 -92.71 -0.79 4.26 16 48 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 49 H 0.04 1.32 7.85 -2.38 -0.02 1.30 16 50 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 51 H 0.06 2.18 8.08 -2.39 -0.02 2.16 16 52 H 0.37 20.45 7.93 -92.71 -0.73 19.71 16 53 H 0.25 15.07 8.31 -92.71 -0.77 14.29 16 54 H 0.05 1.94 7.90 -2.39 -0.02 1.92 16 55 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -75.85 428.60 1.75 -74.11 By element: Atomic # 1 Polarization: 35.31 SS G_CDS: -0.66 Total: 34.64 kcal Atomic # 6 Polarization: -17.58 SS G_CDS: 5.13 Total: -12.45 kcal Atomic # 7 Polarization: -111.34 SS G_CDS: -4.02 Total: -115.36 kcal Atomic # 8 Polarization: -28.45 SS G_CDS: -0.72 Total: -29.17 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Total: -75.85 1.75 -74.11 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479294062.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.496 kcal (2) G-P(sol) polarization free energy of solvation -75.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds