Wall clock time and date at job start Tue Mar 31 2020 22:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.52997 * 109.46817 * 240.00194 * 2 1 3 5 5 H 1.09001 * 109.48330 * 304.97814 * 4 2 1 6 6 C 1.53092 * 109.48191 * 184.94136 * 4 2 1 7 7 C 1.53177 * 109.16737 * 182.41214 * 6 4 2 8 8 H 1.08998 * 109.61914 * 176.89672 * 7 6 4 9 9 C 1.53004 * 109.54148 * 297.11488 * 7 6 4 10 10 C 1.50696 * 109.47687 * 184.55687 * 9 7 6 11 11 O 1.21288 * 119.99170 * 359.97438 * 10 9 7 12 12 N 1.34768 * 120.00623 * 179.97438 * 10 9 7 13 13 C 1.46501 * 120.00183 * 179.97438 * 12 10 9 14 14 C 1.52996 * 109.47037 * 180.02562 * 13 12 10 15 15 H 1.09003 * 112.85311 * 45.33557 * 14 13 12 16 16 C 1.53781 * 113.61369 * 176.53238 * 14 13 12 17 17 C 1.53789 * 87.08366 * 139.98113 * 16 14 13 18 18 H 1.08994 * 113.61289 * 89.19920 * 17 16 14 19 19 N 1.46494 * 113.61484 * 220.02088 * 17 16 14 20 20 C 1.36944 * 120.00068 * 204.99743 * 19 17 16 21 21 H 1.08000 * 119.99368 * 359.97438 * 20 19 17 22 22 C 1.38805 * 120.00056 * 179.97438 * 20 19 17 23 23 N 1.31621 * 120.00094 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99940 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46788 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47347 * 119.99753 * 24 22 20 27 27 H 1.48501 * 109.47150 * 240.00174 * 24 22 20 28 28 C 1.53779 * 113.61642 * 274.13972 * 14 13 12 29 29 C 1.53171 * 109.03947 * 56.97779 * 7 6 4 30 30 C 1.53091 * 109.16460 * 303.02510 * 29 7 6 31 31 O 1.42908 * 109.48067 * 65.00091 * 4 2 1 32 32 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 33 33 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 35 35 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 36 36 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 37 37 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 38 38 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 39 39 H 1.08994 * 109.52374 * 302.31898 * 6 4 2 40 40 H 1.08999 * 109.52083 * 62.50230 * 6 4 2 41 41 H 1.09005 * 109.46998 * 304.55539 * 9 7 6 42 42 H 1.09001 * 109.46959 * 64.55351 * 9 7 6 43 43 H 0.96999 * 119.99710 * 0.02562 * 12 10 9 44 44 H 1.08995 * 109.47427 * 300.00433 * 13 12 10 45 45 H 1.09001 * 109.47011 * 60.00471 * 13 12 10 46 46 H 1.08995 * 113.61785 * 254.52815 * 16 14 13 47 47 H 1.09003 * 113.61353 * 25.34980 * 16 14 13 48 48 H 0.96999 * 120.00373 * 24.99896 * 19 17 16 49 49 H 0.97009 * 119.99771 * 180.02562 * 23 22 20 50 50 H 1.09004 * 113.61268 * 334.56846 * 28 14 13 51 51 H 1.08999 * 113.61676 * 105.47146 * 28 14 13 52 52 H 1.09000 * 109.52321 * 183.11587 * 29 7 6 53 53 H 1.08999 * 109.51756 * 62.92564 * 29 7 6 54 54 H 1.08998 * 109.48521 * 297.62250 * 30 29 7 55 55 H 1.09004 * 109.48120 * 177.58497 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 1 1.6057 -1.7199 -1.2952 6 6 3.5658 -0.8299 -1.1890 7 6 4.0733 -1.4987 -2.4702 8 1 5.1628 -1.5302 -2.4597 9 6 3.5211 -2.9230 -2.5574 10 6 4.1094 -3.6173 -3.7585 11 8 4.8929 -3.0305 -4.4746 12 7 3.7649 -4.8901 -4.0370 13 6 4.3365 -5.5649 -5.2050 14 6 3.7843 -6.9891 -5.2921 15 1 2.7067 -7.0357 -5.1344 16 6 4.2587 -7.7587 -6.5361 17 6 4.3936 -8.9908 -5.6257 18 1 3.4832 -9.5865 -5.5596 19 7 5.5833 -9.7988 -5.9042 20 6 5.5987 -11.1293 -5.5800 21 1 4.7339 -11.5826 -5.1186 22 6 6.7259 -11.8950 -5.8444 23 7 7.7800 -11.3423 -6.4062 24 14 6.7466 -13.7100 -5.4028 25 1 5.4485 -14.0842 -4.7862 26 1 6.9622 -14.5160 -6.6312 27 1 7.8456 -13.9725 -4.4392 28 6 4.5740 -8.0083 -4.4541 29 6 3.5956 -0.6891 -3.6795 30 6 2.0686 -0.5858 -3.6436 31 8 1.6620 0.0167 -2.4132 32 1 -0.3633 0.5140 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 -0.3633 0.5138 0.8900 35 1 1.8934 -0.5139 0.8900 36 1 3.1301 1.4425 0.0005 37 1 1.6768 1.9563 -0.8899 38 1 1.6768 1.9562 0.8901 39 1 3.9988 0.1665 -1.1021 40 1 3.8544 -1.4299 -0.3259 41 1 3.7872 -3.4718 -1.6540 42 1 2.4360 -2.8866 -2.6540 43 1 3.1380 -5.3592 -3.4644 44 1 4.0697 -5.0163 -6.1082 45 1 5.4216 -5.6008 -5.1089 46 1 3.4915 -7.8645 -7.3030 47 1 5.2088 -7.4022 -6.9341 48 1 6.3602 -9.3916 -6.3182 49 1 8.5676 -11.8777 -6.5913 50 1 5.6112 -7.7211 -4.2810 51 1 4.0610 -8.3153 -3.5427 52 1 3.9055 -1.1883 -4.5975 53 1 4.0293 0.3103 -3.6429 54 1 1.6349 -1.5827 -3.7209 55 1 1.7260 0.0257 -4.4784 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479334263.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:19 Heat of formation + Delta-G solvation = -101.397109 kcal Electronic energy + Delta-G solvation = -29658.997806 eV Core-core repulsion = 25694.783212 eV Total energy + Delta-G solvation = -3964.214594 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 2.49 seconds Orbital eigenvalues (eV) -41.51334 -40.41696 -39.63013 -36.35246 -35.97299 -35.32492 -34.97423 -32.23898 -30.99977 -30.23602 -28.16444 -27.79336 -26.46090 -25.90454 -25.35506 -24.46624 -22.52011 -21.81899 -21.08253 -20.54691 -19.78232 -19.03941 -18.00179 -17.29295 -17.19657 -16.93266 -16.62645 -16.54708 -16.14632 -15.75918 -15.54112 -15.24359 -15.12495 -15.03137 -14.75602 -14.59358 -14.29417 -13.96514 -13.82260 -13.41827 -13.24089 -13.11057 -13.04522 -12.92256 -12.75485 -12.68574 -12.62582 -12.44913 -12.37003 -12.16172 -12.09069 -12.05933 -11.70879 -11.58550 -11.55129 -11.54024 -11.33674 -11.09434 -10.98770 -10.84216 -10.65554 -10.18933 -9.98940 -8.97948 -7.95137 -5.23526 1.47247 1.47875 1.57964 1.68506 2.25111 2.56402 2.91617 3.37052 3.60295 3.68947 3.75332 3.76584 3.82027 3.92396 3.97696 4.03077 4.17302 4.23913 4.25992 4.29541 4.32215 4.36203 4.42993 4.46190 4.55877 4.57360 4.64668 4.74726 4.76902 4.80321 4.84381 4.91159 4.97383 4.97666 4.98929 5.05589 5.09097 5.10229 5.16011 5.20073 5.23578 5.27623 5.32249 5.35893 5.38555 5.47941 5.51801 5.54750 5.59952 5.73994 6.27316 6.39293 6.62323 7.32367 7.32702 8.11221 8.32663 9.28576 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.025071 B = 0.001651 C = 0.001622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.562699 B =16950.701629 C =17261.346028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.089 4.089 3 C -0.143 4.143 4 C 0.090 3.910 5 H 0.068 0.932 6 C -0.141 4.141 7 C -0.072 4.072 8 H 0.063 0.937 9 C -0.135 4.135 10 C 0.505 3.495 11 O -0.582 6.582 12 N -0.716 5.716 13 C 0.139 3.861 14 C -0.094 4.094 15 H 0.122 0.878 16 C -0.138 4.138 17 C 0.142 3.858 18 H 0.081 0.919 19 N -0.730 5.730 20 C -0.241 4.241 21 H 0.080 0.920 22 C -0.081 4.081 23 N -0.973 5.973 24 Si 0.973 3.027 25 H -0.263 1.263 26 H -0.295 1.295 27 H -0.296 1.296 28 C -0.152 4.152 29 C -0.152 4.152 30 C 0.063 3.937 31 O -0.387 6.387 32 H 0.048 0.952 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.095 0.905 36 H 0.054 0.946 37 H 0.048 0.952 38 H 0.058 0.942 39 H 0.072 0.928 40 H 0.090 0.910 41 H 0.118 0.882 42 H 0.112 0.888 43 H 0.416 0.584 44 H 0.062 0.938 45 H 0.042 0.958 46 H 0.078 0.922 47 H 0.064 0.936 48 H 0.371 0.629 49 H 0.250 0.750 50 H 0.053 0.947 51 H 0.069 0.931 52 H 0.070 0.930 53 H 0.060 0.940 54 H 0.055 0.945 55 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.700 25.111 14.046 33.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.107 4.107 3 C -0.200 4.200 4 C 0.033 3.967 5 H 0.086 0.914 6 C -0.178 4.178 7 C -0.091 4.091 8 H 0.081 0.919 9 C -0.174 4.174 10 C 0.293 3.707 11 O -0.463 6.463 12 N -0.369 5.369 13 C 0.014 3.986 14 C -0.113 4.113 15 H 0.140 0.860 16 C -0.178 4.178 17 C 0.033 3.967 18 H 0.099 0.901 19 N -0.368 5.368 20 C -0.373 4.373 21 H 0.098 0.902 22 C -0.272 4.272 23 N -0.623 5.623 24 Si 0.803 3.197 25 H -0.187 1.187 26 H -0.222 1.222 27 H -0.223 1.223 28 C -0.193 4.193 29 C -0.190 4.190 30 C -0.014 4.014 31 O -0.307 6.307 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.113 0.887 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.090 0.910 40 H 0.109 0.891 41 H 0.136 0.864 42 H 0.130 0.870 43 H 0.252 0.748 44 H 0.081 0.919 45 H 0.060 0.940 46 H 0.096 0.904 47 H 0.083 0.917 48 H 0.203 0.797 49 H 0.058 0.942 50 H 0.072 0.928 51 H 0.088 0.912 52 H 0.089 0.911 53 H 0.079 0.921 54 H 0.073 0.927 55 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -17.325 25.492 13.606 33.691 hybrid contribution 1.056 -1.352 -0.264 1.735 sum -16.269 24.140 13.342 32.022 Atomic orbital electron populations 1.21776 0.94644 1.01946 1.01752 1.21215 0.96476 0.96915 0.96083 1.21765 1.00846 0.95887 1.01522 1.22292 0.93438 0.95176 0.85816 0.91375 1.22282 0.96350 1.01821 0.97382 1.20875 1.00161 0.92829 0.95192 0.91862 1.21898 1.02819 0.96212 0.96489 1.21271 0.80918 0.81572 0.86926 1.90672 1.36934 1.66102 1.52576 1.45975 1.47754 1.13523 1.29602 1.21160 0.96995 0.92027 0.88370 1.22458 1.00879 0.91030 0.96918 0.85987 1.23328 1.01067 0.96337 0.97025 1.22010 0.89961 0.89917 0.94854 0.90055 1.42648 1.14585 1.06998 1.72539 1.19789 0.99108 0.86986 1.31449 0.90178 1.25604 0.96391 1.02600 1.02638 1.69839 1.05339 1.36642 1.50529 0.85068 0.77633 0.80172 0.76867 1.18686 1.22222 1.22320 1.23730 0.99018 0.97604 0.98919 1.22229 0.96878 1.00385 0.99504 1.22596 0.93432 0.98503 0.86869 1.87910 1.78605 1.50247 1.13898 0.93290 0.92320 0.92146 0.88685 0.92671 0.93330 0.92326 0.90987 0.89125 0.86367 0.86967 0.74772 0.91939 0.93960 0.90364 0.91713 0.79729 0.94152 0.92817 0.91211 0.91117 0.92086 0.92660 0.88809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.09 71.98 0.65 -0.79 16 2 C -0.09 -0.89 2.76 -10.79 -0.03 -0.92 16 3 C -0.14 -1.62 8.75 71.98 0.63 -0.99 16 4 C 0.09 1.04 2.05 30.62 0.06 1.11 16 5 H 0.07 0.65 6.71 -2.39 -0.02 0.64 16 6 C -0.14 -1.65 4.72 30.68 0.14 -1.50 16 7 C -0.07 -1.12 2.34 -10.68 -0.02 -1.15 16 8 H 0.06 1.25 7.96 -2.39 -0.02 1.24 16 9 C -0.13 -1.75 4.61 29.85 0.14 -1.62 16 10 C 0.50 10.64 7.53 87.66 0.66 11.30 16 11 O -0.58 -17.59 13.99 -3.06 -0.04 -17.63 16 12 N -0.72 -13.26 5.56 -463.08 -2.57 -15.83 16 13 C 0.14 3.31 5.50 86.38 0.47 3.79 16 14 C -0.09 -2.17 3.75 -10.27 -0.04 -2.21 16 15 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 16 C -0.14 -4.14 7.40 31.12 0.23 -3.91 16 17 C 0.14 5.25 4.48 45.58 0.20 5.46 16 18 H 0.08 2.90 8.10 -2.39 -0.02 2.88 16 19 N -0.73 -36.56 5.40 -320.17 -1.73 -38.29 16 20 C -0.24 -13.28 9.97 84.03 0.84 -12.44 16 21 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 22 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 23 N -0.97 -60.14 13.06 21.65 0.28 -59.86 16 24 Si 0.97 45.96 29.55 68.60 2.03 47.99 16 25 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 26 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 27 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 28 C -0.15 -4.65 7.45 31.18 0.23 -4.42 16 29 C -0.15 -2.75 5.40 30.68 0.17 -2.58 16 30 C 0.06 0.95 6.57 72.01 0.47 1.42 16 31 O -0.39 -6.17 9.06 -148.98 -1.35 -7.52 16 32 H 0.05 0.63 7.82 -2.39 -0.02 0.61 16 33 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.05 0.62 6.52 -2.39 -0.02 0.60 16 37 H 0.05 0.71 7.56 -2.39 -0.02 0.69 16 38 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.07 0.95 6.46 -2.39 -0.02 0.94 16 40 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.12 1.04 8.14 -2.38 -0.02 1.02 16 42 H 0.11 1.04 5.03 -2.39 -0.01 1.03 16 43 H 0.42 5.03 8.47 -92.71 -0.79 4.24 16 44 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.04 1.26 7.88 -2.39 -0.02 1.24 16 46 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 47 H 0.06 2.16 8.08 -2.39 -0.02 2.14 16 48 H 0.37 20.30 7.92 -92.71 -0.73 19.57 16 49 H 0.25 14.98 8.31 -92.70 -0.77 14.21 16 50 H 0.05 1.93 7.92 -2.38 -0.02 1.91 16 51 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 52 H 0.07 1.63 5.92 -2.39 -0.01 1.61 16 53 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 54 H 0.06 0.73 6.50 -2.39 -0.02 0.72 16 55 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 Total: -1.00 -70.99 418.48 1.25 -69.75 By element: Atomic # 1 Polarization: 35.67 SS G_CDS: -0.65 Total: 35.02 kcal Atomic # 6 Polarization: -18.90 SS G_CDS: 5.28 Total: -13.62 kcal Atomic # 7 Polarization: -109.97 SS G_CDS: -4.02 Total: -113.99 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: -1.39 Total: -25.15 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -70.99 1.25 -69.75 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479334263.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.651 kcal (2) G-P(sol) polarization free energy of solvation -70.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.49 seconds