Wall clock time and date at job start Tue Mar 31 2020 23:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47195 * 2 1 4 4 H 1.08996 * 109.47497 * 305.00363 * 3 2 1 5 5 C 1.53003 * 109.47243 * 184.99779 * 3 2 1 6 6 O 1.42900 * 109.46700 * 65.00247 * 3 2 1 7 7 C 1.42904 * 113.99750 * 209.99933 * 6 3 2 8 8 C 1.50702 * 109.46833 * 179.97438 * 7 6 3 9 9 O 1.21278 * 120.00418 * 0.02562 * 8 7 6 10 10 N 1.34781 * 119.99739 * 180.02562 * 8 7 6 11 11 C 1.47177 * 125.66369 * 359.68752 * 10 8 7 12 12 C 1.53684 * 107.10760 * 178.41683 * 11 10 8 13 13 C 1.54542 * 103.71919 * 338.77975 * 12 11 10 14 14 C 1.47483 * 125.65878 * 180.02562 * 10 8 7 15 15 H 1.09008 * 110.35398 * 85.02009 * 14 10 8 16 16 C 1.52995 * 110.35511 * 322.83404 * 14 10 8 17 17 C 1.52269 * 110.46766 * 96.79945 * 12 11 10 18 18 C 1.53315 * 109.41954 * 183.17184 * 17 12 11 19 19 N 1.46919 * 108.70773 * 306.49218 * 18 17 12 20 20 C 1.36932 * 120.56526 * 234.25103 * 19 18 17 21 21 H 1.08003 * 120.00160 * 27.91950 * 20 19 18 22 22 C 1.38813 * 120.00292 * 207.91539 * 20 19 18 23 23 N 1.31618 * 119.99898 * 17.45457 * 22 20 19 24 24 Si 1.86803 * 120.00049 * 197.44826 * 22 20 19 25 25 H 1.48502 * 109.46708 * 90.00534 * 24 22 20 26 26 H 1.48504 * 109.47204 * 209.99927 * 24 22 20 27 27 H 1.48492 * 109.47497 * 330.00183 * 24 22 20 28 28 C 1.46934 * 118.87657 * 54.22998 * 19 18 17 29 29 C 1.52268 * 110.82119 * 220.59575 * 12 11 10 30 30 H 1.09005 * 109.47231 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47419 * 299.99890 * 1 2 3 32 32 H 1.09001 * 109.47044 * 60.00120 * 1 2 3 33 33 H 1.09007 * 109.47004 * 240.00219 * 2 1 3 34 34 H 1.09003 * 109.47439 * 120.00535 * 2 1 3 35 35 H 1.08997 * 109.46680 * 180.02562 * 5 3 2 36 36 H 1.08996 * 109.47350 * 300.00674 * 5 3 2 37 37 H 1.09001 * 109.46677 * 60.00441 * 5 3 2 38 38 H 1.08996 * 109.47090 * 299.99984 * 7 6 3 39 39 H 1.08999 * 109.46927 * 60.00171 * 7 6 3 40 40 H 1.09005 * 109.90815 * 297.91998 * 11 10 8 41 41 H 1.09003 * 109.90710 * 59.17617 * 11 10 8 42 42 H 1.09003 * 111.01246 * 276.57652 * 13 12 11 43 43 H 1.08998 * 111.01303 * 152.69843 * 13 12 11 44 44 H 1.09005 * 109.46920 * 61.45542 * 16 14 10 45 45 H 1.09001 * 109.47176 * 181.45636 * 16 14 10 46 46 H 1.08998 * 109.47045 * 301.45515 * 16 14 10 47 47 H 1.09006 * 109.48617 * 303.15763 * 17 12 11 48 48 H 1.09004 * 109.48046 * 63.18861 * 17 12 11 49 49 H 1.09006 * 109.59921 * 186.72633 * 18 17 12 50 50 H 1.09003 * 109.72426 * 66.33349 * 18 17 12 51 51 H 0.97004 * 119.99924 * 180.02562 * 23 22 20 52 52 H 1.09000 * 109.60192 * 185.99375 * 28 19 18 53 53 H 1.09008 * 109.73039 * 65.59923 * 28 19 18 54 54 H 1.09001 * 109.47999 * 296.99896 * 29 12 11 55 55 H 1.08998 * 109.48284 * 57.02363 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5649 1.4443 -0.1257 6 8 1.6620 2.0813 1.2211 7 6 1.4559 3.4902 1.1004 8 6 1.0626 4.0569 2.4403 9 8 0.9686 3.3264 3.4038 10 7 0.8155 5.3757 2.5679 11 6 0.8981 6.3726 1.4883 12 6 0.4938 7.7270 2.0916 13 6 -0.3169 7.3406 3.3494 14 6 0.4241 6.0605 3.8141 15 1 1.3076 6.3220 4.3966 16 6 -0.5117 5.1733 4.6375 17 6 1.7296 8.5234 2.4880 18 6 1.2986 9.8332 3.1583 19 7 0.3645 10.5337 2.2665 20 6 0.6000 11.8291 1.8901 21 1 1.6125 12.2019 1.8424 22 6 -0.4624 12.6630 1.5697 23 7 -1.6837 12.3465 1.9447 24 14 -0.1588 14.2344 0.6064 25 1 -0.2654 13.9520 -0.8476 26 1 -1.1704 15.2524 0.9883 27 1 1.2003 14.7481 0.9126 28 6 -0.8267 9.8207 1.7850 29 6 -0.3817 8.5111 1.1235 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 3.9281 2.4720 -0.1252 36 1 3.9995 0.9052 0.7161 37 1 3.8532 0.9571 -1.0571 38 1 2.3768 3.9643 0.7611 39 1 0.6618 3.6807 0.3785 40 1 1.9181 6.4233 1.1072 41 1 0.2116 6.1068 0.6843 42 1 -1.3537 7.1216 3.0940 43 1 -0.2592 8.1222 4.1069 44 1 0.0061 4.2537 4.9101 45 1 -0.8122 5.7028 5.5416 46 1 -1.3956 4.9314 4.0474 47 1 2.3307 7.9392 3.1849 48 1 2.3187 8.7470 1.5986 49 1 2.1736 10.4586 3.3353 50 1 0.8061 9.6166 4.1063 51 1 -2.4262 12.9290 1.7204 52 1 -1.3528 10.4379 1.0568 53 1 -1.4877 9.6006 2.6234 54 1 0.1855 8.7348 0.2200 55 1 -1.2588 7.9181 0.8647 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479501626.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:54:33 Heat of formation + Delta-G solvation = -85.950752 kcal Electronic energy + Delta-G solvation = -31259.628873 eV Core-core repulsion = 27296.084083 eV Total energy + Delta-G solvation = -3963.544790 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 8.03 seconds Orbital eigenvalues (eV) -41.76824 -40.11353 -39.03327 -37.40140 -34.77955 -34.73576 -33.07882 -32.64712 -31.52217 -30.78092 -29.02956 -28.25948 -27.15156 -25.68858 -24.57562 -24.01364 -22.89944 -22.54424 -21.94281 -20.10362 -19.63078 -18.45098 -18.07635 -17.65391 -17.37659 -16.91903 -16.76613 -15.86551 -15.70990 -15.53568 -15.22319 -15.07875 -14.94650 -14.75259 -14.63361 -14.34744 -14.20918 -14.12765 -13.91578 -13.59625 -13.43040 -13.14498 -13.09992 -13.00237 -12.94324 -12.83701 -12.56630 -12.54892 -12.29566 -12.25963 -12.18678 -12.06607 -11.90925 -11.85233 -11.72501 -11.45908 -11.42508 -11.06262 -10.98301 -10.58243 -10.51307 -10.46620 -9.65754 -8.61464 -7.83654 -5.27682 1.48415 1.49984 1.57007 1.58092 1.68420 2.53956 2.86991 3.29082 3.43644 3.52676 3.73797 3.81008 3.82991 3.94128 4.06668 4.12322 4.15775 4.20714 4.24885 4.28031 4.30547 4.44103 4.49592 4.53011 4.64634 4.67524 4.70463 4.72951 4.73512 4.76158 4.82666 4.84622 4.92140 4.97046 5.06314 5.09533 5.10778 5.14442 5.20918 5.24588 5.27859 5.30319 5.31894 5.37088 5.43999 5.46439 5.50619 5.59329 5.70349 5.85911 6.19479 6.43702 6.53015 7.15799 7.20185 7.92741 8.42820 9.21883 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.019354 B = 0.002417 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.369489 B =11580.844183 C =12126.913607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C 0.076 3.924 4 H 0.079 0.921 5 C -0.174 4.174 6 O -0.385 6.385 7 C 0.052 3.948 8 C 0.524 3.476 9 O -0.564 6.564 10 N -0.609 5.609 11 C 0.111 3.889 12 C -0.053 4.053 13 C -0.111 4.111 14 C 0.139 3.861 15 H 0.075 0.925 16 C -0.156 4.156 17 C -0.106 4.106 18 C 0.141 3.859 19 N -0.608 5.608 20 C -0.257 4.257 21 H 0.064 0.936 22 C -0.050 4.050 23 N -0.934 5.934 24 Si 0.962 3.038 25 H -0.285 1.285 26 H -0.299 1.299 27 H -0.270 1.270 28 C 0.179 3.821 29 C -0.111 4.111 30 H 0.061 0.939 31 H 0.038 0.962 32 H 0.061 0.939 33 H 0.098 0.902 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.052 0.948 37 H 0.086 0.914 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.066 0.934 45 H 0.071 0.929 46 H 0.048 0.952 47 H 0.072 0.928 48 H 0.064 0.936 49 H 0.048 0.952 50 H 0.017 0.983 51 H 0.248 0.752 52 H 0.050 0.950 53 H -0.001 1.001 54 H 0.059 0.941 55 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.132 -21.288 -6.398 23.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C 0.019 3.981 4 H 0.097 0.903 5 C -0.231 4.231 6 O -0.304 6.304 7 C -0.028 4.028 8 C 0.314 3.686 9 O -0.443 6.443 10 N -0.345 5.345 11 C -0.011 4.011 12 C -0.053 4.053 13 C -0.149 4.149 14 C 0.036 3.964 15 H 0.093 0.907 16 C -0.214 4.214 17 C -0.145 4.145 18 C 0.016 3.984 19 N -0.331 5.331 20 C -0.388 4.388 21 H 0.082 0.918 22 C -0.246 4.246 23 N -0.580 5.580 24 Si 0.791 3.209 25 H -0.212 1.212 26 H -0.226 1.226 27 H -0.195 1.195 28 C 0.053 3.947 29 C -0.151 4.151 30 H 0.081 0.919 31 H 0.057 0.943 32 H 0.080 0.920 33 H 0.116 0.884 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.105 0.895 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.107 0.893 41 H 0.105 0.895 42 H 0.090 0.910 43 H 0.094 0.906 44 H 0.085 0.915 45 H 0.090 0.910 46 H 0.067 0.933 47 H 0.090 0.910 48 H 0.083 0.917 49 H 0.067 0.933 50 H 0.035 0.965 51 H 0.057 0.943 52 H 0.068 0.932 53 H 0.017 0.983 54 H 0.078 0.922 55 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.963 -21.776 -5.743 23.573 hybrid contribution -0.293 1.485 -0.258 1.536 sum 6.670 -20.291 -6.001 22.186 Atomic orbital electron populations 1.21724 0.95683 1.01967 1.01497 1.21662 0.96374 0.94492 1.03151 1.22462 0.95121 0.94367 0.86147 0.90341 1.22296 0.95166 1.02667 1.03006 1.88020 1.89771 1.18603 1.34034 1.22274 1.03034 0.83661 0.93812 1.20432 0.76786 0.80440 0.90961 1.90641 1.53229 1.58827 1.41620 1.48631 1.67772 1.06143 1.11914 1.22275 1.02867 0.86390 0.89594 1.20849 0.95836 0.93303 0.95338 1.22837 0.98767 0.95576 0.97761 1.21933 0.97217 0.91645 0.85557 0.90686 1.22068 0.98900 1.00496 0.99921 1.21769 0.95995 0.95871 1.00828 1.21089 0.92675 0.92896 0.91780 1.44294 1.25083 1.10140 1.53621 1.19491 0.91991 0.88304 1.38973 0.91797 1.25720 0.95847 1.00618 1.02389 1.70179 0.99511 1.39646 1.48674 0.85348 0.77215 0.79599 0.78778 1.21175 1.22550 1.19531 1.20581 0.87804 0.90611 0.95673 1.21884 0.98710 0.96653 0.97819 0.91947 0.94324 0.92019 0.88362 0.92345 0.92271 0.92892 0.89547 0.88311 0.88338 0.89269 0.89516 0.91019 0.90562 0.91531 0.90994 0.93329 0.90966 0.91726 0.93315 0.96540 0.94262 0.93161 0.98319 0.92210 0.91268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 9.81 71.98 0.71 -1.54 16 2 C -0.12 -1.64 5.64 30.59 0.17 -1.47 16 3 C 0.08 1.13 2.72 30.60 0.08 1.22 16 4 H 0.08 0.89 7.79 -2.39 -0.02 0.87 16 5 C -0.17 -2.18 9.53 71.98 0.69 -1.49 16 6 O -0.39 -8.69 9.06 -129.94 -1.18 -9.87 16 7 C 0.05 0.98 5.42 71.24 0.39 1.37 16 8 C 0.52 13.88 7.71 87.66 0.68 14.56 16 9 O -0.56 -19.60 14.16 16.01 0.23 -19.37 16 10 N -0.61 -14.71 3.25 -788.61 -2.56 -17.27 16 11 C 0.11 2.29 5.67 86.48 0.49 2.78 16 12 C -0.05 -1.42 0.55 -51.91 -0.03 -1.45 16 13 C -0.11 -3.09 4.35 31.82 0.14 -2.95 16 14 C 0.14 3.61 3.44 45.50 0.16 3.76 16 15 H 0.08 1.96 7.75 -2.38 -0.02 1.94 16 16 C -0.16 -4.17 8.71 71.98 0.63 -3.54 16 17 C -0.11 -3.06 4.72 30.46 0.14 -2.92 16 18 C 0.14 5.38 6.18 86.41 0.53 5.92 16 19 N -0.61 -28.66 2.98 -698.59 -2.08 -30.74 16 20 C -0.26 -13.62 9.57 84.03 0.80 -12.82 16 21 H 0.06 3.33 7.89 -2.91 -0.02 3.30 16 22 C -0.05 -2.74 4.90 84.86 0.42 -2.32 16 23 N -0.93 -53.95 11.19 21.65 0.24 -53.71 16 24 Si 0.96 43.88 29.59 68.60 2.03 45.91 16 25 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 26 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 27 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 28 C 0.18 7.98 5.03 86.40 0.43 8.41 16 29 C -0.11 -3.59 4.73 30.46 0.14 -3.44 16 30 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 31 H 0.04 0.77 7.82 -2.39 -0.02 0.75 16 32 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.10 0.88 8.14 -2.38 -0.02 0.86 16 34 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.06 0.72 7.87 -2.39 -0.02 0.70 16 36 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.10 1.42 7.87 -2.39 -0.02 1.40 16 39 H 0.10 1.43 8.08 -2.39 -0.02 1.41 16 40 H 0.09 1.54 7.82 -2.38 -0.02 1.52 16 41 H 0.09 1.53 7.79 -2.39 -0.02 1.51 16 42 H 0.07 2.03 7.92 -2.39 -0.02 2.01 16 43 H 0.08 2.38 6.08 -2.39 -0.01 2.36 16 44 H 0.07 2.04 5.89 -2.38 -0.01 2.03 16 45 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 46 H 0.05 1.31 8.14 -2.39 -0.02 1.30 16 47 H 0.07 1.82 7.47 -2.38 -0.02 1.81 16 48 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 49 H 0.05 1.87 7.93 -2.38 -0.02 1.85 16 50 H 0.02 0.65 6.48 -2.39 -0.02 0.64 16 51 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 52 H 0.05 2.61 6.02 -2.39 -0.01 2.60 16 53 H 0.00 -0.06 7.56 -2.38 -0.02 -0.08 16 54 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 55 H 0.07 1.98 8.11 -2.39 -0.02 1.96 16 Total: -1.00 -68.03 414.12 4.08 -63.95 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: 0.83 Total: 17.03 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: 6.57 Total: 4.07 kcal Atomic # 7 Polarization: -97.32 SS G_CDS: -4.40 Total: -101.72 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: -0.95 Total: -29.24 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -68.03 4.08 -63.95 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479501626.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.001 kcal (2) G-P(sol) polarization free energy of solvation -68.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.04 seconds