Wall clock time and date at job start Tue Mar 31 2020 22:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.47127 * 2 1 4 4 C 1.42903 * 113.99963 * 180.02562 * 3 2 1 5 5 C 1.52992 * 109.47291 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.47378 * 176.18869 * 5 4 3 7 7 C 1.50702 * 112.85042 * 294.75489 * 6 5 4 8 8 O 1.21283 * 120.00027 * 120.58237 * 7 6 5 9 9 N 1.34770 * 120.00059 * 300.58449 * 7 6 5 10 10 C 1.46497 * 120.00370 * 174.34821 * 9 7 6 11 11 H 1.09004 * 110.63657 * 323.30432 * 10 9 7 12 12 C 1.55154 * 110.72603 * 86.44927 * 10 9 7 13 13 C 1.54906 * 101.58596 * 153.86775 * 12 10 9 14 14 N 1.47422 * 104.83002 * 322.99252 * 13 12 10 15 15 C 1.36943 * 125.64695 * 204.08938 * 14 13 12 16 16 H 1.08001 * 119.99723 * 164.63254 * 15 14 13 17 17 C 1.38811 * 119.99836 * 344.62852 * 15 14 13 18 18 N 1.31614 * 119.99970 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99717 * 179.97438 * 17 15 14 20 20 H 1.48489 * 109.47133 * 60.00159 * 19 17 15 21 21 H 1.48498 * 109.47023 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47100 * 300.00172 * 19 17 15 23 23 C 1.47021 * 108.70627 * 24.12595 * 14 13 12 24 24 H 1.08995 * 109.88687 * 239.52381 * 23 14 13 25 25 C 1.53007 * 109.88389 * 118.35478 * 23 14 13 26 26 C 1.52999 * 109.47167 * 177.21406 * 25 23 14 27 27 C 1.53783 * 113.61708 * 163.55935 * 6 5 4 28 28 C 1.53953 * 87.01968 * 220.05065 * 27 6 5 29 29 C 1.53777 * 87.11284 * 25.36018 * 28 27 6 30 30 H 1.08995 * 109.46906 * 59.99813 * 1 2 3 31 31 H 1.09001 * 109.47219 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47006 * 300.00241 * 1 2 3 33 33 H 1.09009 * 109.47111 * 240.00157 * 2 1 3 34 34 H 1.08999 * 109.47619 * 120.00248 * 2 1 3 35 35 H 1.09001 * 109.46995 * 300.00380 * 4 3 2 36 36 H 1.09002 * 109.47159 * 59.99930 * 4 3 2 37 37 H 1.09005 * 109.47790 * 296.18956 * 5 4 3 38 38 H 1.08999 * 109.47232 * 56.18929 * 5 4 3 39 39 H 0.97006 * 120.00441 * 354.34036 * 9 7 6 40 40 H 1.09005 * 111.00470 * 271.94486 * 12 10 9 41 41 H 1.08996 * 111.00005 * 35.79255 * 12 10 9 42 42 H 1.09001 * 110.36400 * 81.82883 * 13 12 10 43 43 H 1.08997 * 110.36978 * 204.03907 * 13 12 10 44 44 H 0.97003 * 119.99618 * 179.97438 * 18 17 15 45 45 H 1.08995 * 109.47183 * 297.21994 * 25 23 14 46 46 H 1.09004 * 109.46814 * 57.21620 * 25 23 14 47 47 H 1.09000 * 109.47035 * 66.00805 * 26 25 23 48 48 H 1.09001 * 109.46799 * 186.00759 * 26 25 23 49 49 H 1.09000 * 109.47250 * 306.00789 * 26 25 23 50 50 H 1.09008 * 113.61461 * 334.56771 * 27 6 5 51 51 H 1.09000 * 113.61753 * 105.46778 * 27 6 5 52 52 H 1.09000 * 113.53820 * 270.80917 * 28 27 6 53 53 H 1.08997 * 113.74451 * 139.94278 * 28 27 6 54 54 H 1.09003 * 113.61417 * 220.08968 * 29 28 27 55 55 H 1.09003 * 113.68874 * 89.19943 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8254 2.9383 -0.0012 6 6 5.3476 3.0599 0.0941 7 6 5.8948 2.5489 1.4019 8 8 6.6986 1.6407 1.4095 9 7 5.4910 3.1010 2.5631 10 6 5.9258 2.5255 3.8382 11 1 5.9738 1.4384 3.7726 12 6 7.2977 3.1107 4.2654 13 6 7.2374 2.9530 5.8052 14 7 5.8335 3.2316 6.1584 15 6 5.3885 3.6650 7.3788 16 1 4.3945 4.0761 7.4762 17 6 6.2148 3.5758 8.4906 18 7 7.4262 3.0752 8.3716 19 14 5.6080 4.1676 10.1552 20 1 4.3994 3.3975 10.5438 21 1 6.6723 3.9651 11.1707 22 1 5.2700 5.6115 10.0741 23 6 4.9902 2.9663 4.9836 24 1 4.4564 3.8727 4.6981 25 6 3.9933 1.8496 5.3001 26 6 3.0755 1.6289 4.0961 27 6 5.8802 4.4489 -0.2958 28 6 7.0346 3.7184 -1.0055 29 6 6.0875 2.5142 -1.1386 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8934 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 3.8340 0.9763 0.8891 36 1 3.8333 0.9767 -0.8908 37 1 3.4806 3.4061 -0.9233 38 1 3.3670 3.4370 0.8527 39 1 4.9124 3.8796 2.5547 40 1 8.1185 2.5295 3.8449 41 1 7.3796 4.1603 3.9831 42 1 7.5065 1.9367 6.0932 43 1 7.9012 3.6712 6.2865 44 1 8.0038 3.0133 9.1485 45 1 4.5354 0.9294 5.5173 46 1 3.3947 2.1317 6.1664 47 1 3.6593 1.2445 3.2598 48 1 2.2990 0.9101 4.3581 49 1 2.6141 2.5750 3.8127 50 1 5.2244 4.9931 -0.9755 51 1 6.2001 5.0489 0.5562 52 1 7.8926 3.5298 -0.3602 53 1 7.3133 4.1624 -1.9612 54 1 6.5746 1.5544 -0.9661 55 1 5.4880 2.5270 -2.0488 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479634989.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:25 Heat of formation + Delta-G solvation = -75.290681 kcal Electronic energy + Delta-G solvation = -31830.680549 eV Core-core repulsion = 27867.598014 eV Total energy + Delta-G solvation = -3963.082534 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.91164 -39.99484 -38.92000 -38.12924 -35.64664 -34.30914 -33.63595 -33.24010 -31.32262 -30.76791 -28.30814 -26.99018 -26.43410 -25.93078 -24.00089 -23.66296 -23.16414 -22.33879 -21.89463 -21.45184 -19.81146 -18.75659 -17.78835 -17.53905 -17.40403 -17.10076 -16.71040 -16.18696 -15.95942 -15.79652 -15.48919 -15.44870 -15.13716 -14.98116 -14.65685 -14.40902 -14.06650 -13.79034 -13.56284 -13.45098 -13.30500 -13.24323 -13.21905 -12.97279 -12.87710 -12.69988 -12.60282 -12.33831 -12.23712 -12.09037 -12.07284 -11.99450 -11.96369 -11.89587 -11.77200 -11.59574 -11.39807 -11.22296 -11.14720 -10.72201 -10.63778 -10.53112 -9.98800 -8.83763 -7.86457 -5.24934 1.46688 1.49532 1.55680 1.61970 2.10776 2.51135 2.64995 3.33496 3.44504 3.54164 3.61284 3.79236 3.82151 3.89563 3.93249 4.04131 4.11205 4.16298 4.19524 4.23826 4.33265 4.38208 4.45951 4.47670 4.50569 4.58245 4.60214 4.62800 4.73029 4.82807 4.83671 4.86844 4.92217 4.93926 5.00068 5.04472 5.08360 5.10707 5.13751 5.16252 5.17929 5.27474 5.29314 5.29929 5.44473 5.47568 5.50671 5.56201 5.65733 5.69387 6.22189 6.24981 6.59140 7.07871 7.27321 7.75495 8.43244 9.24962 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012089 B = 0.003330 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2315.516281 B = 8405.683773 C =10113.196181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.049 3.951 3 O -0.400 6.400 4 C 0.064 3.936 5 C -0.090 4.090 6 C -0.104 4.104 7 C 0.536 3.464 8 O -0.578 6.578 9 N -0.700 5.700 10 C 0.160 3.840 11 H 0.071 0.929 12 C -0.140 4.140 13 C 0.184 3.816 14 N -0.612 5.612 15 C -0.235 4.235 16 H 0.082 0.918 17 C -0.061 4.061 18 N -0.949 5.949 19 Si 0.975 3.025 20 H -0.277 1.277 21 H -0.297 1.297 22 H -0.275 1.275 23 C 0.161 3.839 24 H 0.052 0.948 25 C -0.125 4.125 26 C -0.128 4.128 27 C -0.111 4.111 28 C -0.143 4.143 29 C -0.116 4.116 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.041 0.959 35 H 0.025 0.975 36 H 0.057 0.943 37 H 0.106 0.894 38 H 0.078 0.922 39 H 0.411 0.589 40 H 0.062 0.938 41 H 0.072 0.928 42 H -0.007 1.007 43 H 0.039 0.961 44 H 0.247 0.753 45 H 0.034 0.966 46 H 0.050 0.950 47 H 0.045 0.955 48 H 0.057 0.943 49 H 0.065 0.935 50 H 0.124 0.876 51 H 0.068 0.932 52 H 0.056 0.944 53 H 0.092 0.908 54 H 0.057 0.943 55 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.786 0.186 -23.350 25.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.027 4.027 3 O -0.320 6.320 4 C -0.013 4.013 5 C -0.127 4.127 6 C -0.107 4.107 7 C 0.324 3.676 8 O -0.458 6.458 9 N -0.351 5.351 10 C 0.054 3.946 11 H 0.089 0.911 12 C -0.179 4.179 13 C 0.058 3.942 14 N -0.337 5.337 15 C -0.364 4.364 16 H 0.100 0.900 17 C -0.255 4.255 18 N -0.597 5.597 19 Si 0.804 3.196 20 H -0.203 1.203 21 H -0.224 1.224 22 H -0.200 1.200 23 C 0.054 3.946 24 H 0.069 0.931 25 C -0.164 4.164 26 C -0.186 4.186 27 C -0.148 4.148 28 C -0.181 4.181 29 C -0.154 4.154 30 H 0.084 0.916 31 H 0.105 0.895 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.059 0.941 35 H 0.043 0.957 36 H 0.075 0.925 37 H 0.124 0.876 38 H 0.097 0.903 39 H 0.248 0.752 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.011 0.989 43 H 0.057 0.943 44 H 0.056 0.944 45 H 0.052 0.948 46 H 0.069 0.931 47 H 0.064 0.936 48 H 0.076 0.924 49 H 0.084 0.916 50 H 0.142 0.858 51 H 0.087 0.913 52 H 0.074 0.926 53 H 0.111 0.889 54 H 0.076 0.924 55 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -10.281 -0.287 -23.117 25.302 hybrid contribution 0.368 -0.195 1.769 1.817 sum -9.913 -0.482 -21.349 23.543 Atomic orbital electron populations 1.21742 0.92537 1.03260 1.02893 1.22616 0.96568 0.83227 1.00293 1.87825 1.21216 1.27467 1.95491 1.22455 0.80943 0.98103 0.99755 1.21407 0.91150 0.94882 1.05282 1.21947 0.95850 1.00884 0.92024 1.20497 0.80049 0.81525 0.85533 1.90676 1.35124 1.32062 1.87906 1.45827 1.51713 1.33185 1.04381 1.21583 0.93449 0.96990 0.82539 0.91102 1.23204 0.97234 1.00755 0.96753 1.21092 0.86598 0.96695 0.89786 1.44663 1.02350 1.77845 1.08813 1.19269 0.99831 1.32844 0.84470 0.90005 1.25732 0.97048 1.01462 1.01229 1.70138 1.08669 1.51536 1.29394 0.85204 0.76881 0.78308 0.79251 1.20316 1.22384 1.20030 1.21232 0.90981 0.95796 0.86614 0.93067 1.21892 0.97686 0.98178 0.98682 1.21606 0.98510 1.01932 0.96576 1.23054 0.97708 0.92921 1.01129 1.22836 0.96643 0.96980 1.01611 1.22912 0.97677 0.98554 0.96257 0.91594 0.89544 0.92449 0.92559 0.94050 0.95660 0.92484 0.87561 0.90293 0.75237 0.91892 0.90973 0.98941 0.94273 0.94372 0.94759 0.93144 0.93639 0.92440 0.91624 0.85805 0.91302 0.92566 0.88931 0.92448 0.86682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 10.28 71.98 0.74 -1.29 16 2 C 0.05 0.86 6.66 71.98 0.48 1.34 16 3 O -0.40 -8.33 10.34 -148.98 -1.54 -9.87 16 4 C 0.06 1.27 5.65 71.98 0.41 1.67 16 5 C -0.09 -1.43 4.97 30.59 0.15 -1.27 16 6 C -0.10 -1.92 0.79 -52.40 -0.04 -1.96 16 7 C 0.54 14.79 5.65 87.66 0.50 15.28 16 8 O -0.58 -21.00 15.68 -3.04 -0.05 -21.05 16 9 N -0.70 -19.21 4.91 -436.92 -2.14 -21.35 16 10 C 0.16 5.77 1.88 46.18 0.09 5.85 16 11 H 0.07 2.85 7.43 -2.38 -0.02 2.84 16 12 C -0.14 -5.63 6.77 31.98 0.22 -5.41 16 13 C 0.18 9.35 5.40 86.85 0.47 9.82 16 14 N -0.61 -30.85 3.13 -668.26 -2.09 -32.93 16 15 C -0.24 -12.87 9.75 84.03 0.82 -12.05 16 16 H 0.08 4.26 7.83 -2.91 -0.02 4.23 16 17 C -0.06 -3.46 5.47 84.86 0.46 -2.99 16 18 N -0.95 -57.40 10.60 21.65 0.23 -57.17 16 19 Si 0.98 45.44 29.55 68.60 2.03 47.47 16 20 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 21 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 22 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 23 C 0.16 6.30 2.94 45.34 0.13 6.44 16 24 H 0.05 1.88 7.68 -2.39 -0.02 1.86 16 25 C -0.12 -4.63 5.41 30.60 0.17 -4.47 16 26 C -0.13 -3.62 9.57 71.98 0.69 -2.93 16 27 C -0.11 -1.58 7.23 31.18 0.23 -1.35 16 28 C -0.14 -2.40 7.81 31.18 0.24 -2.15 16 29 C -0.12 -2.02 6.45 31.12 0.20 -1.82 16 30 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 34 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.03 0.62 7.42 -2.39 -0.02 0.60 16 36 H 0.06 1.03 7.76 -2.39 -0.02 1.01 16 37 H 0.11 1.22 8.07 -2.38 -0.02 1.20 16 38 H 0.08 1.27 7.91 -2.39 -0.02 1.25 16 39 H 0.41 9.20 8.09 -92.70 -0.75 8.45 16 40 H 0.06 2.53 8.14 -2.38 -0.02 2.51 16 41 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 42 H -0.01 -0.42 8.04 -2.39 -0.02 -0.44 16 43 H 0.04 2.21 6.99 -2.39 -0.02 2.20 16 44 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 45 H 0.03 1.40 8.08 -2.39 -0.02 1.39 16 46 H 0.05 2.00 7.91 -2.39 -0.02 1.98 16 47 H 0.04 1.30 7.39 -2.39 -0.02 1.28 16 48 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 49 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 50 H 0.12 1.05 8.05 -2.38 -0.02 1.04 16 51 H 0.07 1.09 8.09 -2.39 -0.02 1.07 16 52 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 53 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 54 H 0.06 1.32 7.35 -2.39 -0.02 1.30 16 55 H 0.11 1.35 8.10 -2.39 -0.02 1.33 16 Total: -1.00 -70.14 428.27 2.46 -67.67 By element: Atomic # 1 Polarization: 24.46 SS G_CDS: 0.09 Total: 24.55 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: 5.94 Total: 2.69 kcal Atomic # 7 Polarization: -107.45 SS G_CDS: -4.00 Total: -111.46 kcal Atomic # 8 Polarization: -29.33 SS G_CDS: -1.59 Total: -30.92 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -70.14 2.46 -67.67 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479634989.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.619 kcal (2) G-P(sol) polarization free energy of solvation -70.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds