Wall clock time and date at job start Wed Apr 1 2020 00:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46960 * 2 1 4 4 H 1.08996 * 109.46822 * 54.37976 * 3 2 1 5 5 O 1.42900 * 109.46886 * 294.37630 * 3 2 1 6 6 C 1.42895 * 114.00002 * 90.00151 * 5 3 2 7 7 C 1.53869 * 110.03253 * 209.99629 * 6 5 3 8 8 C 1.54268 * 106.64021 * 240.64090 * 7 6 5 9 9 C 1.54960 * 104.16302 * 336.44589 * 8 7 6 10 10 C 1.54276 * 110.07308 * 92.80389 * 6 5 3 11 11 C 1.50697 * 109.47092 * 174.37561 * 3 2 1 12 12 O 1.21280 * 119.99971 * 107.38721 * 11 3 2 13 13 N 1.34784 * 120.00123 * 287.39259 * 11 3 2 14 14 C 1.46923 * 120.62955 * 4.24722 * 13 11 3 15 15 C 1.52762 * 109.00760 * 233.58614 * 14 13 11 16 16 C 1.53043 * 109.37848 * 305.58520 * 15 14 13 17 17 C 1.53039 * 109.53989 * 61.24166 * 16 15 14 18 18 C 1.46928 * 120.63032 * 184.52332 * 13 11 3 19 19 H 1.09001 * 109.58546 * 246.15706 * 18 13 11 20 20 C 1.52998 * 109.58709 * 6.43940 * 18 13 11 21 21 N 1.46497 * 109.47242 * 287.30583 * 20 18 13 22 22 C 1.36941 * 120.00322 * 185.06836 * 21 20 18 23 23 H 1.08001 * 119.99551 * 359.97438 * 22 21 20 24 24 C 1.38809 * 120.00405 * 179.97438 * 22 21 20 25 25 N 1.31619 * 119.99707 * 359.97438 * 24 22 21 26 26 Si 1.86795 * 120.00308 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.46808 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47522 * 119.99718 * 26 24 22 29 29 H 1.48498 * 109.47360 * 240.00317 * 26 24 22 30 30 H 1.09002 * 109.47056 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47261 * 299.99868 * 1 2 3 32 32 H 1.08998 * 109.47385 * 60.00269 * 1 2 3 33 33 H 1.08995 * 109.47024 * 240.00169 * 2 1 3 34 34 H 1.09000 * 109.47061 * 120.00159 * 2 1 3 35 35 H 1.08999 * 110.01841 * 331.39350 * 6 5 3 36 36 H 1.08995 * 110.03485 * 359.95008 * 7 6 5 37 37 H 1.09003 * 110.03653 * 121.33362 * 7 6 5 38 38 H 1.09004 * 110.48741 * 95.09468 * 8 7 6 39 39 H 1.08998 * 110.48953 * 217.73688 * 8 7 6 40 40 H 1.09002 * 110.72082 * 279.57509 * 9 8 7 41 41 H 1.08996 * 110.76529 * 156.21727 * 9 8 7 42 42 H 1.08996 * 110.48939 * 261.59465 * 10 6 5 43 43 H 1.09001 * 110.48183 * 24.10722 * 10 6 5 44 44 H 1.09002 * 109.58735 * 353.41421 * 14 13 11 45 45 H 1.08997 * 109.58903 * 113.84413 * 14 13 11 46 46 H 1.08999 * 109.56677 * 185.55069 * 15 14 13 47 47 H 1.09000 * 109.38885 * 65.51147 * 15 14 13 48 48 H 1.09000 * 109.46501 * 301.21825 * 16 15 14 49 49 H 1.09002 * 109.44713 * 181.25397 * 16 15 14 50 50 H 1.09002 * 109.50106 * 178.67864 * 17 16 15 51 51 H 1.09010 * 109.49525 * 58.58115 * 17 16 15 52 52 H 1.08999 * 109.46928 * 47.30192 * 20 18 13 53 53 H 1.09001 * 109.46997 * 167.30175 * 20 18 13 54 54 H 0.97004 * 120.00227 * 5.05751 * 21 20 18 55 55 H 0.97003 * 119.99785 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5967 1.9845 0.8354 5 8 1.6744 2.0769 -1.2272 6 6 0.4047 2.7313 -1.1875 7 6 -0.2397 2.7165 -2.5847 8 6 -0.4297 4.1903 -2.9992 9 6 -0.4702 4.9600 -1.6549 10 6 0.5850 4.2139 -0.8010 11 6 3.5405 1.4449 0.1392 12 8 4.2374 1.7268 -0.8125 13 7 4.1081 1.1336 1.3214 14 6 3.2827 0.7001 2.4570 15 6 3.5996 1.5782 3.6662 16 6 5.1059 1.5473 3.9355 17 6 5.8542 2.1045 2.7224 18 6 5.5634 1.2271 1.5008 19 1 5.9767 0.2310 1.6596 20 6 6.1947 1.8517 0.2549 21 7 6.1668 0.8836 -0.8443 22 6 6.7725 1.1825 -2.0355 23 1 7.2704 2.1321 -2.1647 24 6 6.7466 0.2650 -3.0768 25 7 6.1402 -0.8925 -2.9191 26 14 7.5722 0.6730 -4.7020 27 1 8.1779 2.0266 -4.6233 28 1 8.6318 -0.3283 -4.9841 29 1 6.5627 0.6456 -5.7907 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 -0.2485 2.2352 -0.4697 36 1 0.4164 2.2110 -3.2932 37 1 -1.2054 2.2124 -2.5452 38 1 0.4106 4.5272 -3.6063 39 1 -1.3674 4.3166 -3.5403 40 1 -1.4575 4.8877 -1.1987 41 1 -0.1847 6.0022 -1.7976 42 1 0.3873 4.3580 0.2612 43 1 1.5902 4.5537 -1.0506 44 1 2.2279 0.7999 2.2012 45 1 3.5063 -0.3397 2.6954 46 1 3.0662 1.2031 4.5396 47 1 3.2876 2.6023 3.4615 48 1 5.4215 0.5198 4.1163 49 1 5.3305 2.1557 4.8116 50 1 6.9254 2.1040 2.9239 51 1 5.5209 3.1236 2.5259 52 1 5.6327 2.7411 -0.0300 53 1 7.2270 2.1275 0.4701 54 1 5.7194 0.0307 -0.7282 55 1 6.1217 -1.5335 -3.6469 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480362332.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:00:28 Heat of formation + Delta-G solvation = -65.815783 kcal Electronic energy + Delta-G solvation = -32736.011815 eV Core-core repulsion = 28773.340143 eV Total energy + Delta-G solvation = -3962.671672 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.67399 -40.07729 -38.16840 -37.27951 -36.18676 -34.50515 -33.61331 -33.19006 -31.51050 -29.79204 -29.36882 -27.91057 -27.13039 -25.69361 -24.36132 -23.29510 -22.65568 -21.63935 -21.45539 -21.28132 -20.14232 -19.09639 -18.17856 -17.75670 -16.83749 -16.68113 -16.54225 -16.35025 -15.72920 -15.47325 -15.40988 -15.21110 -15.11784 -14.93859 -14.58572 -14.41881 -14.29218 -14.01745 -13.74723 -13.51294 -13.43934 -13.16227 -13.06463 -12.94742 -12.86779 -12.69741 -12.63296 -12.19246 -12.10803 -12.05810 -12.05062 -11.97565 -11.92899 -11.83763 -11.69514 -11.52319 -11.44722 -11.32574 -11.30081 -10.87329 -10.41830 -9.74341 -9.37724 -8.63082 -7.84805 -5.02690 1.38880 1.42940 1.51522 1.93596 1.95950 2.59913 2.92257 3.48064 3.57011 3.63240 3.69116 3.83052 3.83866 3.91950 3.98136 4.01945 4.03434 4.15263 4.25492 4.33308 4.35303 4.40618 4.47449 4.49519 4.52791 4.55686 4.64808 4.71409 4.73266 4.75077 4.83462 4.86047 4.92144 5.00009 5.01064 5.03125 5.05459 5.10433 5.14653 5.15694 5.16800 5.21804 5.25947 5.29001 5.31126 5.34627 5.43727 5.48921 5.53548 5.85163 6.35446 6.36516 6.70465 7.42394 7.63752 8.23887 8.46529 9.40546 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.007423 B = 0.005254 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3770.927414 B = 5327.722790 C = 7713.730423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.141 4.141 3 C 0.088 3.912 4 H 0.105 0.895 5 O -0.384 6.384 6 C 0.069 3.931 7 C -0.127 4.127 8 C -0.124 4.124 9 C -0.113 4.113 10 C -0.150 4.150 11 C 0.463 3.537 12 O -0.495 6.495 13 N -0.610 5.610 14 C 0.097 3.903 15 C -0.128 4.128 16 C -0.113 4.113 17 C -0.118 4.118 18 C 0.148 3.852 19 H 0.059 0.941 20 C 0.165 3.835 21 N -0.700 5.700 22 C -0.208 4.208 23 H 0.058 0.942 24 C -0.086 4.086 25 N -0.973 5.973 26 Si 0.965 3.035 27 H -0.272 1.272 28 H -0.288 1.288 29 H -0.301 1.301 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.055 0.945 33 H 0.034 0.966 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.044 0.956 37 H 0.095 0.905 38 H 0.045 0.955 39 H 0.088 0.912 40 H 0.093 0.907 41 H 0.071 0.929 42 H 0.084 0.916 43 H 0.042 0.958 44 H 0.099 0.901 45 H 0.073 0.927 46 H 0.105 0.895 47 H 0.064 0.936 48 H 0.068 0.932 49 H 0.085 0.915 50 H 0.079 0.921 51 H 0.060 0.940 52 H 0.011 0.989 53 H 0.014 0.986 54 H 0.366 0.634 55 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.420 7.360 17.956 26.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.179 4.179 3 C 0.027 3.973 4 H 0.123 0.877 5 O -0.303 6.303 6 C 0.012 3.988 7 C -0.164 4.164 8 C -0.162 4.162 9 C -0.150 4.150 10 C -0.188 4.188 11 C 0.249 3.751 12 O -0.366 6.366 13 N -0.349 5.349 14 C -0.025 4.025 15 C -0.166 4.166 16 C -0.150 4.150 17 C -0.157 4.157 18 C 0.044 3.956 19 H 0.077 0.923 20 C 0.038 3.962 21 N -0.340 5.340 22 C -0.341 4.341 23 H 0.076 0.924 24 C -0.277 4.277 25 N -0.627 5.627 26 Si 0.796 3.204 27 H -0.196 1.196 28 H -0.215 1.215 29 H -0.229 1.229 30 H 0.089 0.911 31 H 0.102 0.898 32 H 0.074 0.926 33 H 0.053 0.947 34 H 0.111 0.889 35 H 0.115 0.885 36 H 0.063 0.937 37 H 0.113 0.887 38 H 0.064 0.936 39 H 0.107 0.893 40 H 0.111 0.889 41 H 0.090 0.910 42 H 0.103 0.897 43 H 0.061 0.939 44 H 0.117 0.883 45 H 0.092 0.908 46 H 0.123 0.877 47 H 0.082 0.918 48 H 0.086 0.914 49 H 0.104 0.896 50 H 0.098 0.902 51 H 0.078 0.922 52 H 0.029 0.971 53 H 0.032 0.968 54 H 0.198 0.802 55 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -17.813 7.662 17.131 25.875 hybrid contribution 0.740 -0.381 -1.498 1.714 sum -17.074 7.281 15.633 24.268 Atomic orbital electron populations 1.21913 0.92543 1.03345 1.02825 1.22050 0.98775 0.94487 1.02585 1.21963 0.91377 0.95332 0.88653 0.87734 1.88191 1.37687 1.71172 1.33203 1.23340 0.84340 0.92493 0.98659 1.22275 1.00556 0.98199 0.95413 1.22364 1.01887 0.93935 0.97977 1.22426 0.99225 0.98766 0.94592 1.22941 0.99437 0.95374 1.01066 1.21155 0.90906 0.79907 0.83150 1.91205 1.62224 1.44176 1.38946 1.47995 1.06639 1.68651 1.11591 1.22031 0.95611 0.99091 0.85747 1.21853 0.96714 1.00268 0.97759 1.21499 0.94941 1.01885 0.96703 1.21858 1.01578 0.98565 0.93722 1.21321 0.80186 0.98944 0.95118 0.92342 1.20852 0.95227 0.93066 0.87009 1.42266 1.64191 1.17003 1.10571 1.19498 1.23566 0.99125 0.91893 0.92353 1.25356 1.03858 0.97152 1.01302 1.69834 1.51468 1.08939 1.32447 0.85151 0.77367 0.77376 0.80509 1.19633 1.21528 1.22894 0.91118 0.89769 0.92598 0.94690 0.88938 0.88494 0.93664 0.88652 0.93605 0.89325 0.88861 0.91018 0.89729 0.93899 0.88264 0.90828 0.87665 0.91771 0.91365 0.89601 0.90244 0.92150 0.97149 0.96803 0.80202 0.94783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 8.60 71.98 0.62 -2.16 16 2 C -0.14 -3.86 5.21 30.60 0.16 -3.70 16 3 C 0.09 2.72 1.81 29.85 0.05 2.78 16 4 H 0.11 2.40 6.85 -2.39 -0.02 2.38 16 5 O -0.38 -14.09 9.05 -130.25 -1.18 -15.27 16 6 C 0.07 1.73 2.09 31.32 0.07 1.80 16 7 C -0.13 -3.08 6.46 31.32 0.20 -2.88 16 8 C -0.12 -2.61 6.84 31.69 0.22 -2.39 16 9 C -0.11 -2.00 6.91 31.91 0.22 -1.78 16 10 C -0.15 -3.45 6.56 31.67 0.21 -3.24 16 11 C 0.46 18.67 6.65 87.65 0.58 19.26 16 12 O -0.49 -26.93 10.25 15.70 0.16 -26.77 16 13 N -0.61 -19.58 2.98 -795.86 -2.37 -21.95 16 14 C 0.10 1.93 5.17 86.22 0.45 2.37 16 15 C -0.13 -1.86 6.07 30.53 0.19 -1.68 16 16 C -0.11 -1.89 5.89 30.62 0.18 -1.71 16 17 C -0.12 -2.93 5.35 30.67 0.16 -2.77 16 18 C 0.15 5.17 2.90 44.97 0.13 5.30 16 19 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 20 C 0.17 7.80 4.90 86.38 0.42 8.23 16 21 N -0.70 -41.10 3.19 -343.46 -1.10 -42.20 16 22 C -0.21 -13.42 9.72 84.03 0.82 -12.60 16 23 H 0.06 3.72 7.83 -2.91 -0.02 3.70 16 24 C -0.09 -5.61 5.50 84.86 0.47 -5.15 16 25 N -0.97 -66.65 13.06 21.65 0.28 -66.37 16 26 Si 0.97 52.56 29.55 68.60 2.03 54.59 16 27 H -0.27 -14.05 7.11 99.48 0.71 -13.35 16 28 H -0.29 -15.17 7.11 99.48 0.71 -14.46 16 29 H -0.30 -16.53 7.11 99.48 0.71 -15.82 16 30 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.08 1.03 8.04 -2.39 -0.02 1.01 16 32 H 0.06 1.13 5.79 -2.39 -0.01 1.12 16 33 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.09 2.15 6.03 -2.39 -0.01 2.13 16 35 H 0.10 1.83 5.34 -2.39 -0.01 1.82 16 36 H 0.04 1.42 7.95 -2.39 -0.02 1.41 16 37 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 39 H 0.09 1.42 8.14 -2.39 -0.02 1.41 16 40 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.07 1.21 8.14 -2.39 -0.02 1.20 16 42 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.04 1.29 8.08 -2.39 -0.02 1.28 16 44 H 0.10 1.59 4.77 -2.39 -0.01 1.57 16 45 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 47 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 49 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 50 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 51 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 52 H 0.01 0.56 6.37 -2.39 -0.02 0.55 16 53 H 0.01 0.66 8.10 -2.39 -0.02 0.64 16 54 H 0.37 23.00 7.21 -92.71 -0.67 22.33 16 55 H 0.24 16.10 8.31 -92.71 -0.77 15.33 16 Total: -1.00 -88.34 406.96 3.15 -85.19 By element: Atomic # 1 Polarization: 32.91 SS G_CDS: 0.19 Total: 33.10 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: 5.14 Total: -0.32 kcal Atomic # 7 Polarization: -127.34 SS G_CDS: -3.18 Total: -130.52 kcal Atomic # 8 Polarization: -41.02 SS G_CDS: -1.02 Total: -42.03 kcal Atomic # 14 Polarization: 52.56 SS G_CDS: 2.03 Total: 54.59 kcal Total: -88.34 3.15 -85.19 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480362332.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.370 kcal (2) G-P(sol) polarization free energy of solvation -88.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds