Wall clock time and date at job start Tue Mar 31 2020 23:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.42899 * 109.47466 * 2 1 4 4 C 1.42893 * 114.00568 * 178.89543 * 3 2 1 5 5 H 1.09010 * 109.46921 * 19.39094 * 4 3 2 6 6 C 1.53006 * 109.46911 * 259.39580 * 4 3 2 7 7 C 1.52996 * 109.47399 * 65.50349 * 6 4 3 8 8 C 1.50698 * 109.47648 * 139.39014 * 4 3 2 9 9 O 1.21283 * 119.99668 * 5.00409 * 8 4 3 10 10 N 1.34773 * 120.00306 * 184.99637 * 8 4 3 11 11 C 1.46927 * 120.62793 * 359.72587 * 10 8 4 12 12 C 1.53629 * 108.54409 * 126.36729 * 11 10 8 13 13 C 1.53044 * 109.24166 * 54.85438 * 12 11 10 14 14 C 1.52993 * 109.44865 * 178.50307 * 13 12 11 15 15 H 1.09000 * 110.88941 * 60.75686 * 14 13 12 16 16 C 1.55162 * 111.00200 * 296.87786 * 14 13 12 17 17 C 1.54371 * 102.92107 * 206.45632 * 16 14 13 18 18 N 1.47025 * 107.28758 * 22.13453 * 17 16 14 19 19 C 1.36936 * 125.64729 * 181.05244 * 18 17 16 20 20 H 1.07998 * 120.00271 * 180.02562 * 19 18 17 21 21 C 1.38822 * 120.00051 * 0.05390 * 19 18 17 22 22 N 1.31621 * 119.99819 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00047 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47096 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47259 * 119.99600 * 23 21 19 26 26 H 1.48499 * 109.46695 * 239.99796 * 23 21 19 27 27 C 1.47424 * 108.70329 * 1.09832 * 18 17 16 28 28 C 1.53052 * 109.53549 * 298.51212 * 13 12 11 29 29 C 1.46924 * 120.63096 * 180.02562 * 10 8 4 30 30 H 1.09000 * 109.47203 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47770 * 300.00628 * 1 2 3 32 32 H 1.09003 * 109.46958 * 60.00612 * 1 2 3 33 33 H 1.08997 * 109.47770 * 239.99372 * 2 1 3 34 34 H 1.09003 * 109.46958 * 119.99388 * 2 1 3 35 35 H 1.09005 * 109.46794 * 185.50338 * 6 4 3 36 36 H 1.08997 * 109.46544 * 305.50144 * 6 4 3 37 37 H 1.09004 * 109.47006 * 57.88127 * 7 6 4 38 38 H 1.08994 * 109.47334 * 177.87710 * 7 6 4 39 39 H 1.09008 * 109.47082 * 297.88661 * 7 6 4 40 40 H 1.09004 * 109.58553 * 246.19519 * 11 10 8 41 41 H 1.08997 * 109.59144 * 6.62288 * 11 10 8 42 42 H 1.08997 * 109.63234 * 294.86587 * 12 11 10 43 43 H 1.08995 * 109.46150 * 174.73695 * 12 11 10 44 44 H 1.08997 * 109.45893 * 58.52895 * 13 12 11 45 45 H 1.08991 * 110.71896 * 324.78780 * 16 14 13 46 46 H 1.08996 * 110.71603 * 88.06300 * 16 14 13 47 47 H 1.09004 * 109.84557 * 262.73453 * 17 16 14 48 48 H 1.08991 * 110.03348 * 141.65135 * 17 16 14 49 49 H 0.96992 * 119.99708 * 180.02562 * 22 21 19 50 50 H 1.09005 * 110.36112 * 217.02675 * 27 18 17 51 51 H 1.08996 * 110.36856 * 94.70595 * 27 18 17 52 52 H 1.08996 * 109.49695 * 301.41504 * 28 13 12 53 53 H 1.08993 * 109.51959 * 181.33137 * 28 13 12 54 54 H 1.09001 * 109.58660 * 353.36889 * 29 10 8 55 55 H 1.08995 * 109.58770 * 113.66263 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4306 1.4602 0.0252 5 1 3.8754 0.5203 -0.3020 6 6 3.8921 1.7743 1.4497 7 6 3.5749 0.5876 2.3619 8 6 3.8630 2.5692 -0.8990 9 8 3.0311 3.2598 -1.4483 10 7 5.1743 2.7935 -1.1151 11 6 6.1939 1.9692 -0.4521 12 6 7.1345 1.3991 -1.5247 13 6 7.7021 2.5487 -2.3605 14 6 8.6685 1.9893 -3.4064 15 1 8.1572 1.3006 -4.0789 16 6 9.8854 1.3051 -2.7294 17 6 10.9930 1.4363 -3.7967 18 7 10.6194 2.5513 -4.6793 19 6 11.3305 2.9799 -5.7682 20 1 10.9704 3.8121 -6.3549 21 6 12.5140 2.3444 -6.1184 22 7 12.9529 1.3302 -5.4035 23 14 13.4844 2.9297 -7.6034 24 1 12.7829 4.0776 -8.2321 25 1 14.8409 3.3536 -7.1727 26 1 13.6005 1.8226 -8.5863 27 6 9.3531 3.1320 -4.1971 28 6 6.5584 3.2831 -3.0642 29 6 5.6113 3.8713 -2.0129 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8901 35 1 4.9668 1.9568 1.4515 36 1 3.3723 2.6608 1.8128 37 1 4.0644 -0.3072 1.9774 38 1 3.9376 0.7960 3.3685 39 1 2.4969 0.4286 2.3896 40 1 6.7621 2.5830 0.2470 41 1 5.7114 1.1523 0.0843 42 1 6.5820 0.7175 -2.1714 43 1 7.9513 0.8618 -1.0430 44 1 8.2333 3.2430 -1.7096 45 1 10.1654 1.8313 -1.8169 46 1 9.6718 0.2567 -2.5213 47 1 11.0620 0.5140 -4.3737 48 1 11.9495 1.6465 -3.3184 49 1 13.7800 0.8864 -5.6479 50 1 8.7309 3.4369 -5.0386 51 1 9.5501 3.9811 -3.5426 52 1 6.0114 2.5836 -3.6963 53 1 6.9648 4.0869 -3.6779 54 1 4.7442 4.3096 -2.5068 55 1 6.1308 4.6378 -1.4379 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483799194.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:58:28 Heat of formation + Delta-G solvation = -89.064796 kcal Electronic energy + Delta-G solvation = -30827.081522 eV Core-core repulsion = 26863.401697 eV Total energy + Delta-G solvation = -3963.679825 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.60841 -39.96960 -38.92245 -37.85176 -35.44888 -34.58970 -33.33401 -32.12835 -31.96705 -30.89080 -29.50116 -28.06101 -26.82661 -25.12317 -24.22498 -23.67302 -23.02888 -21.91062 -21.71391 -20.87520 -20.19604 -18.83542 -18.48032 -17.86831 -17.03090 -16.88532 -16.67176 -16.30938 -15.91457 -15.71166 -15.40405 -15.18225 -14.96805 -14.79855 -14.50568 -14.22549 -14.08831 -13.82288 -13.80241 -13.48716 -13.38003 -13.27923 -13.19700 -13.08867 -12.89654 -12.81176 -12.75892 -12.41209 -12.26584 -12.15582 -12.12687 -12.10907 -11.96205 -11.80549 -11.67279 -11.61040 -11.31458 -11.16113 -11.03300 -10.82107 -10.70723 -10.29965 -9.65902 -8.87122 -7.85087 -5.19721 1.44145 1.44982 1.51982 1.55419 1.76666 2.48957 2.81084 3.32504 3.41903 3.63242 3.71831 3.79337 3.83135 3.90902 3.94481 4.11896 4.17694 4.22261 4.29481 4.31143 4.32015 4.44937 4.45844 4.47560 4.48235 4.54762 4.64505 4.74920 4.78613 4.79342 4.86254 4.86747 4.92544 4.99868 5.02165 5.04695 5.06361 5.09778 5.15104 5.17163 5.20276 5.27705 5.32031 5.40459 5.43250 5.46741 5.57376 5.62341 5.74304 5.82347 6.12059 6.22172 6.40319 7.12087 7.12455 7.80590 8.44684 9.25344 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.025202 B = 0.002086 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.761890 B =13418.718320 C =13726.294676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.043 3.957 3 O -0.387 6.387 4 C 0.077 3.923 5 H 0.110 0.890 6 C -0.140 4.140 7 C -0.152 4.152 8 C 0.503 3.497 9 O -0.579 6.579 10 N -0.603 5.603 11 C 0.099 3.901 12 C -0.126 4.126 13 C -0.064 4.064 14 C -0.078 4.078 15 H 0.062 0.938 16 C -0.119 4.119 17 C 0.180 3.820 18 N -0.632 5.632 19 C -0.240 4.240 20 H 0.079 0.921 21 C -0.070 4.070 22 N -0.951 5.951 23 Si 0.977 3.023 24 H -0.267 1.267 25 H -0.291 1.291 26 H -0.292 1.292 27 C 0.136 3.864 28 C -0.122 4.122 29 C 0.115 3.885 30 H 0.094 0.906 31 H 0.061 0.939 32 H 0.047 0.953 33 H 0.051 0.949 34 H 0.077 0.923 35 H 0.102 0.898 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.054 0.946 40 H 0.094 0.906 41 H 0.111 0.889 42 H 0.062 0.938 43 H 0.096 0.904 44 H 0.081 0.919 45 H 0.076 0.924 46 H 0.081 0.919 47 H 0.004 0.996 48 H 0.002 0.998 49 H 0.246 0.754 50 H 0.032 0.968 51 H 0.025 0.975 52 H 0.054 0.946 53 H 0.074 0.926 54 H 0.070 0.930 55 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.449 -4.543 18.931 28.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.033 4.033 3 O -0.306 6.306 4 C 0.016 3.984 5 H 0.127 0.873 6 C -0.178 4.178 7 C -0.209 4.209 8 C 0.292 3.708 9 O -0.459 6.459 10 N -0.337 5.337 11 C -0.022 4.022 12 C -0.164 4.164 13 C -0.083 4.083 14 C -0.097 4.097 15 H 0.081 0.919 16 C -0.157 4.157 17 C 0.055 3.945 18 N -0.358 5.358 19 C -0.370 4.370 20 H 0.097 0.903 21 C -0.263 4.263 22 N -0.601 5.601 23 Si 0.806 3.194 24 H -0.191 1.191 25 H -0.218 1.218 26 H -0.219 1.219 27 C 0.011 3.989 28 C -0.160 4.160 29 C -0.007 4.007 30 H 0.113 0.887 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.095 0.905 35 H 0.120 0.880 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.073 0.927 40 H 0.113 0.887 41 H 0.129 0.871 42 H 0.081 0.919 43 H 0.115 0.885 44 H 0.100 0.900 45 H 0.094 0.906 46 H 0.100 0.900 47 H 0.022 0.978 48 H 0.021 0.979 49 H 0.055 0.945 50 H 0.050 0.950 51 H 0.043 0.957 52 H 0.073 0.927 53 H 0.093 0.907 54 H 0.089 0.911 55 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -20.853 -4.060 18.528 28.189 hybrid contribution 1.091 0.207 -1.490 1.859 sum -19.761 -3.853 17.038 26.375 Atomic orbital electron populations 1.21761 0.93175 1.03421 1.02423 1.22952 0.96384 0.82508 1.01455 1.88010 1.19253 1.28350 1.94942 1.22079 0.83462 0.97319 0.95545 0.87258 1.22132 1.02981 1.00641 0.92036 1.21847 1.02050 0.97234 0.99768 1.21237 0.82158 0.85517 0.81896 1.90674 1.52692 1.50574 1.51935 1.48205 1.05171 1.34287 1.46045 1.22356 0.89438 0.95445 0.95006 1.22050 0.99469 0.97362 0.97499 1.21011 0.94192 0.97378 0.95680 1.22212 0.94662 0.96377 0.96496 0.91912 1.22759 0.94453 1.00982 0.97534 1.20956 0.94212 0.89512 0.89779 1.44866 1.23975 1.36331 1.30633 1.19500 1.02391 1.12019 1.03051 0.90303 1.25663 0.99446 0.98816 1.02378 1.70206 1.23056 1.25148 1.41668 0.85022 0.78203 0.77475 0.78732 1.19102 1.21819 1.21920 1.21782 0.86266 0.95143 0.95714 1.21901 0.96121 1.00472 0.97553 1.21581 0.98129 0.89306 0.91710 0.88732 0.91999 0.93367 0.93074 0.90462 0.88009 0.92145 0.90923 0.90909 0.92650 0.88743 0.87110 0.91904 0.88527 0.90043 0.90573 0.90029 0.97756 0.97932 0.94492 0.94957 0.95746 0.92729 0.90748 0.91127 0.89813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 10.28 71.98 0.74 -1.17 16 2 C 0.04 0.60 6.03 71.98 0.43 1.03 16 3 O -0.39 -8.29 9.30 -129.99 -1.21 -9.50 16 4 C 0.08 1.30 1.85 29.85 0.06 1.36 16 5 H 0.11 1.30 7.00 -2.38 -0.02 1.28 16 6 C -0.14 -1.65 5.17 30.60 0.16 -1.49 16 7 C -0.15 -1.17 8.94 71.98 0.64 -0.53 16 8 C 0.50 12.11 7.12 87.66 0.62 12.73 16 9 O -0.58 -19.92 15.92 15.95 0.25 -19.66 16 10 N -0.60 -11.56 2.97 -817.99 -2.43 -13.99 16 11 C 0.10 1.19 4.92 86.51 0.43 1.61 16 12 C -0.13 -1.94 5.21 30.82 0.16 -1.78 16 13 C -0.06 -1.36 1.65 -10.76 -0.02 -1.38 16 14 C -0.08 -2.39 2.56 -9.40 -0.02 -2.41 16 15 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 16 C -0.12 -3.94 5.42 31.80 0.17 -3.77 16 17 C 0.18 8.87 5.38 86.74 0.47 9.33 16 18 N -0.63 -32.83 3.39 -691.89 -2.35 -35.18 16 19 C -0.24 -13.78 10.28 84.04 0.86 -12.91 16 20 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 21 C -0.07 -4.09 5.49 84.86 0.47 -3.62 16 22 N -0.95 -58.14 10.31 21.65 0.22 -57.91 16 23 Si 0.98 46.59 29.55 68.60 2.03 48.62 16 24 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 25 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 26 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 27 C 0.14 5.39 5.80 86.86 0.50 5.90 16 28 C -0.12 -2.72 5.21 30.69 0.16 -2.56 16 29 C 0.12 2.43 6.43 86.38 0.56 2.99 16 30 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.05 0.67 8.13 -2.39 -0.02 0.65 16 34 H 0.08 0.71 5.87 -2.39 -0.01 0.69 16 35 H 0.10 0.82 5.41 -2.38 -0.01 0.81 16 36 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.07 0.34 8.14 -2.38 -0.02 0.33 16 38 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.05 0.52 6.35 -2.38 -0.02 0.50 16 40 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 41 H 0.11 0.81 4.73 -2.39 -0.01 0.80 16 42 H 0.06 1.06 8.14 -2.39 -0.02 1.05 16 43 H 0.10 1.27 7.32 -2.39 -0.02 1.26 16 44 H 0.08 1.67 8.13 -2.39 -0.02 1.65 16 45 H 0.08 2.24 8.04 -2.39 -0.02 2.22 16 46 H 0.08 2.32 8.09 -2.39 -0.02 2.30 16 47 H 0.00 0.23 7.38 -2.38 -0.02 0.22 16 48 H 0.00 0.14 7.50 -2.39 -0.02 0.12 16 49 H 0.25 14.55 8.31 -92.71 -0.77 13.77 16 50 H 0.03 1.29 8.03 -2.38 -0.02 1.27 16 51 H 0.02 0.95 8.03 -2.39 -0.02 0.93 16 52 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 53 H 0.07 1.75 7.32 -2.39 -0.02 1.73 16 54 H 0.07 1.80 7.01 -2.39 -0.02 1.79 16 55 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -78.65 410.53 3.75 -74.90 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: 0.84 Total: 9.39 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: 6.39 Total: 3.33 kcal Atomic # 7 Polarization: -102.53 SS G_CDS: -4.55 Total: -107.08 kcal Atomic # 8 Polarization: -28.21 SS G_CDS: -0.96 Total: -29.16 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Total: -78.65 3.75 -74.90 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483799194.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.165 kcal (2) G-P(sol) polarization free energy of solvation -78.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds