Wall clock time and date at job start Tue Mar 31 2020 23:14:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.52996 * 109.47507 * 2 1
4 4 H 1.08999 * 109.46702 * 56.38009 * 3 2 1
5 5 C 1.52990 * 109.47261 * 296.38065 * 3 2 1
6 6 C 1.52996 * 109.47236 * 176.37341 * 3 2 1
7 7 H 1.08997 * 109.47830 * 306.04876 * 6 3 2
8 8 O 1.42905 * 109.46811 * 66.04681 * 6 3 2
9 9 C 1.42897 * 114.00105 * 262.57081 * 8 6 3
10 10 C 1.50701 * 109.47332 * 186.04419 * 6 3 2
11 11 O 1.21281 * 120.00128 * 245.00584 * 10 6 3
12 12 N 1.34779 * 119.99952 * 65.00439 * 10 6 3
13 13 C 1.46496 * 120.00293 * 180.02562 * 12 10 6
14 14 C 1.53001 * 109.47262 * 179.97438 * 13 12 10
15 15 H 1.09000 * 109.43212 * 59.12832 * 14 13 12
16 16 C 1.53145 * 109.43118 * 179.03925 * 14 13 12
17 17 C 1.53697 * 108.88293 * 66.13604 * 16 14 13
18 18 H 1.08995 * 112.10286 * 187.60921 * 17 16 14
19 19 C 1.54611 * 107.82968 * 312.22338 * 17 16 14
20 20 C 1.55891 * 104.90266 * 88.64779 * 19 17 16
21 21 C 1.54607 * 103.99606 * 0.02562 * 20 19 17
22 22 H 1.08994 * 112.19311 * 147.19736 * 21 20 19
23 23 C 1.53136 * 109.39708 * 299.24168 * 14 13 12
24 24 N 1.48291 * 104.81325 * 25.18396 * 21 20 19
25 25 C 1.36937 * 128.21063 * 138.11217 * 24 21 20
26 26 H 1.08004 * 120.00389 * 150.44223 * 25 24 21
27 27 C 1.38812 * 119.99823 * 330.43492 * 25 24 21
28 28 N 1.31622 * 119.99692 * 175.20639 * 27 25 24
29 29 Si 1.86799 * 120.00147 * 355.20678 * 27 25 24
30 30 H 1.48497 * 109.47246 * 90.36072 * 29 27 25
31 31 H 1.48492 * 109.47037 * 210.36569 * 29 27 25
32 32 H 1.48500 * 109.46910 * 330.36252 * 29 27 25
33 33 H 1.08998 * 109.47338 * 59.99224 * 1 2 3
34 34 H 1.08994 * 109.47340 * 180.02562 * 1 2 3
35 35 H 1.09005 * 109.46586 * 299.99338 * 1 2 3
36 36 H 1.09006 * 109.46823 * 240.00166 * 2 1 3
37 37 H 1.08998 * 109.47338 * 120.00776 * 2 1 3
38 38 H 1.09002 * 109.47072 * 179.97438 * 5 3 2
39 39 H 1.08999 * 109.47216 * 299.99629 * 5 3 2
40 40 H 1.09003 * 109.47543 * 59.99987 * 5 3 2
41 41 H 1.08998 * 109.47292 * 65.58295 * 9 8 6
42 42 H 1.09002 * 109.46964 * 185.58837 * 9 8 6
43 43 H 1.09003 * 109.47367 * 305.58645 * 9 8 6
44 44 H 0.97005 * 119.99463 * 359.97438 * 12 10 6
45 45 H 1.08997 * 109.47199 * 59.99230 * 13 12 10
46 46 H 1.09005 * 109.46773 * 299.99502 * 13 12 10
47 47 H 1.08995 * 109.57090 * 306.30944 * 16 14 13
48 48 H 1.09004 * 109.66519 * 186.01154 * 16 14 13
49 49 H 1.08993 * 110.38438 * 207.48332 * 19 17 16
50 50 H 1.09001 * 110.37920 * 329.84464 * 19 17 16
51 51 H 1.09007 * 110.92567 * 241.36633 * 20 19 17
52 52 H 1.09000 * 110.56651 * 118.50978 * 20 19 17
53 53 H 1.09002 * 109.57327 * 53.66570 * 23 14 13
54 54 H 1.09007 * 109.57229 * 174.03096 * 23 14 13
55 55 H 0.97001 * 119.99364 * 179.97438 * 28 27 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 1 1.6247 1.9746 0.8558
5 6 1.6059 2.1369 -1.2922
6 6 3.5673 1.4433 0.0912
7 1 3.8802 0.8565 0.9548
8 8 4.1158 0.8707 -1.0977
9 6 4.4626 -0.5098 -0.9715
10 6 4.0608 2.8594 0.2407
11 8 4.7344 3.3623 -0.6335
12 7 3.7536 3.5669 1.3459
13 6 4.2329 4.9437 1.4910
14 6 3.7470 5.5149 2.8247
15 1 4.1216 4.8979 3.6414
16 6 4.2685 6.9458 2.9862
17 6 3.6138 7.8373 1.9191
18 1 4.0455 8.8379 1.8995
19 6 3.7298 7.1109 0.5592
20 6 2.4534 6.2203 0.4703
21 6 1.7035 6.5085 1.7913
22 1 0.6216 6.4562 1.6704
23 6 2.2159 5.5179 2.8491
24 7 2.1574 7.8605 2.1977
25 6 1.4090 8.8871 2.7087
26 1 1.8599 9.6009 3.3823
27 6 0.0709 9.0106 2.3609
28 7 -0.6724 9.9395 2.9240
29 14 -0.6749 7.8584 1.0938
30 1 -1.2277 6.6617 1.7775
31 1 -1.7631 8.5600 0.3667
32 1 0.3733 7.4376 0.1297
33 1 -0.3634 0.5139 -0.8899
34 1 -0.3634 -1.0276 0.0005
35 1 -0.3633 0.5138 0.8901
36 1 1.8933 -0.5138 -0.8901
37 1 1.8934 -0.5139 0.8899
38 1 1.9689 3.1647 -1.2919
39 1 2.0212 1.6047 -2.1480
40 1 0.5178 2.1364 -1.3571
41 1 3.5587 -1.0987 -0.8161
42 1 4.9619 -0.8436 -1.8811
43 1 5.1318 -0.6401 -0.1210
44 1 3.2145 3.1648 2.0449
45 1 3.8457 5.5513 0.6732
46 1 5.3226 4.9535 1.4666
47 1 5.3508 6.9567 2.8572
48 1 4.0154 7.3185 3.9788
49 1 3.7450 7.8331 -0.2569
50 1 4.6259 6.4908 0.5353
51 1 2.7187 5.1649 0.4068
52 1 1.8424 6.5111 -0.3843
53 1 1.8451 4.5181 2.6229
54 1 1.8670 5.8242 3.8353
55 1 -1.6074 10.0259 2.6806
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001484388754.mol2 55
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:14:08
Heat of formation + Delta-G solvation = 15.550025 kcal
Electronic energy + Delta-G solvation = -32950.481707 eV
Core-core repulsion = 28991.338321 eV
Total energy + Delta-G solvation = -3959.143386 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 338.236 amu
Computer time = 2.21 seconds
Orbital eigenvalues (eV)
-42.89731 -40.92963 -38.81607 -36.46614 -36.12659 -34.63828 -33.09982 -32.52436
-32.22623 -31.31685 -29.01117 -27.99887 -27.08915 -25.48163 -25.07641 -24.44726
-22.43900 -21.85149 -21.51030 -21.03836 -20.25685 -18.91897 -18.47726 -17.91880
-17.69933 -17.30212 -16.64716 -16.23790 -15.94657 -15.48825 -15.32067 -15.30903
-14.86464 -14.81028 -14.51490 -14.41773 -14.18606 -14.10918 -13.85533 -13.66319
-13.49371 -13.26735 -13.10738 -13.09217 -12.85674 -12.76716 -12.58932 -12.47709
-12.33899 -12.14844 -12.06216 -11.83460 -11.64961 -11.43139 -11.40399 -11.39325
-11.18019 -11.04876 -10.90957 -10.79659 -10.59605 -10.26215 -9.49906 -8.88436
-8.15338 -5.52210 1.25126 1.38620 1.46940 1.64485 2.01173 2.40599
3.06632 3.12779 3.22129 3.65178 3.70824 3.73276 3.81253 3.87322
3.92535 4.08444 4.11967 4.15189 4.23675 4.30570 4.32688 4.44985
4.47365 4.52373 4.53692 4.60554 4.63875 4.69711 4.72291 4.76577
4.78711 4.83724 4.89192 4.90540 4.99194 5.04244 5.07365 5.14623
5.17494 5.19476 5.21991 5.22826 5.29463 5.40180 5.42943 5.45810
5.50257 5.52814 5.59198 5.81349 6.13116 6.16055 6.63675 6.75857
7.31452 7.52306 8.25782 9.05049
Molecular weight = 338.24amu
Principal moments of inertia in cm(-1)
A = 0.014456 B = 0.003922 C = 0.003383
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1936.480535 B = 7137.300364 C = 8275.748422
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.156 4.156
2 C -0.116 4.116
3 C -0.104 4.104
4 H 0.092 0.908
5 C -0.144 4.144
6 C 0.079 3.921
7 H 0.115 0.885
8 O -0.382 6.382
9 C 0.015 3.985
10 C 0.505 3.495
11 O -0.569 6.569
12 N -0.712 5.712
13 C 0.010 3.990
14 C -0.071 4.071
15 H 0.089 0.911
16 C -0.116 4.116
17 C 0.144 3.856
18 H 0.069 0.931
19 C -0.152 4.152
20 C -0.160 4.160
21 C 0.129 3.871
22 H 0.042 0.958
23 C -0.121 4.121
24 N -0.619 5.619
25 C -0.215 4.215
26 H 0.054 0.946
27 C -0.040 4.040
28 N -0.969 5.969
29 Si 0.947 3.053
30 H -0.281 1.281
31 H -0.322 1.322
32 H -0.234 1.234
33 H 0.050 0.950
34 H 0.063 0.937
35 H 0.055 0.945
36 H 0.069 0.931
37 H 0.081 0.919
38 H 0.030 0.970
39 H 0.056 0.944
40 H 0.065 0.935
41 H 0.065 0.935
42 H 0.091 0.909
43 H 0.053 0.947
44 H 0.408 0.592
45 H 0.174 0.826
46 H 0.059 0.941
47 H 0.085 0.915
48 H 0.053 0.947
49 H 0.056 0.944
50 H 0.120 0.880
51 H 0.121 0.879
52 H 0.046 0.954
53 H 0.079 0.921
54 H 0.050 0.950
55 H 0.260 0.740
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.297 -25.924 -3.817 27.804
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.213 4.213
2 C -0.153 4.153
3 C -0.123 4.123
4 H 0.110 0.890
5 C -0.201 4.201
6 C 0.018 3.982
7 H 0.132 0.868
8 O -0.300 6.300
9 C -0.080 4.080
10 C 0.292 3.708
11 O -0.447 6.447
12 N -0.366 5.366
13 C -0.110 4.110
14 C -0.090 4.090
15 H 0.107 0.893
16 C -0.156 4.156
17 C 0.038 3.962
18 H 0.087 0.913
19 C -0.190 4.190
20 C -0.198 4.198
21 C 0.024 3.976
22 H 0.060 0.940
23 C -0.161 4.161
24 N -0.343 5.343
25 C -0.344 4.344
26 H 0.072 0.928
27 C -0.234 4.234
28 N -0.617 5.617
29 Si 0.779 3.221
30 H -0.209 1.209
31 H -0.252 1.252
32 H -0.159 1.159
33 H 0.069 0.931
34 H 0.082 0.918
35 H 0.074 0.926
36 H 0.088 0.912
37 H 0.099 0.901
38 H 0.049 0.951
39 H 0.076 0.924
40 H 0.084 0.916
41 H 0.084 0.916
42 H 0.110 0.890
43 H 0.071 0.929
44 H 0.245 0.755
45 H 0.189 0.811
46 H 0.078 0.922
47 H 0.104 0.896
48 H 0.072 0.928
49 H 0.075 0.925
50 H 0.138 0.862
51 H 0.138 0.862
52 H 0.065 0.935
53 H 0.098 0.902
54 H 0.069 0.931
55 H 0.068 0.932
Dipole moment (debyes) X Y Z Total
from point charges 9.623 -25.282 -4.539 27.429
hybrid contribution -1.213 0.114 0.310 1.257
sum 8.411 -25.167 -4.228 26.870
Atomic orbital electron populations
1.21832 0.95358 1.02170 1.01942 1.21662 0.96421 0.94214 1.02996
1.21668 0.92124 0.98860 0.99626 0.88980 1.21743 1.01295 0.99173
0.97866 1.22132 0.94319 0.91222 0.90537 0.86781 1.88015 1.82528
1.26077 1.33356 1.23242 1.00565 0.80946 1.03290 1.20975 0.79639
0.88627 0.81598 1.90692 1.40021 1.72077 1.41946 1.46136 1.54474
1.14985 1.20979 1.24830 0.99521 0.82965 1.03657 1.21097 0.94495
0.96558 0.96811 0.89255 1.22031 0.99969 0.94428 0.99140 1.21864
0.84097 0.97306 0.92919 0.91327 1.23621 0.98212 0.98802 0.98379
1.23806 0.96768 1.01671 0.97529 1.21928 0.95597 0.86226 0.93869
0.94013 1.22115 0.96198 0.98689 0.99054 1.45469 1.04990 1.09083
1.74774 1.18499 0.92526 1.03841 1.19560 0.92801 1.25858 0.97929
0.99029 1.00556 1.69870 1.07461 1.37097 1.47228 0.85916 0.77417
0.77494 0.81278 1.20915 1.25234 1.15863 0.93078 0.91757 0.92580
0.91221 0.90067 0.95072 0.92447 0.91583 0.91619 0.89006 0.92857
0.75499 0.81097 0.92241 0.89644 0.92827 0.92482 0.86231 0.86180
0.93503 0.90223 0.93107 0.93150
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.83 9.64 71.98 0.69 -1.14 16
2 C -0.12 -1.29 4.47 30.59 0.14 -1.15 16
3 C -0.10 -1.61 2.21 -10.80 -0.02 -1.64 16
4 H 0.09 1.27 7.74 -2.39 -0.02 1.26 16
5 C -0.14 -2.99 8.54 71.98 0.61 -2.38 16
6 C 0.08 1.40 2.37 29.85 0.07 1.47 16
7 H 0.11 1.28 7.63 -2.39 -0.02 1.26 16
8 O -0.38 -8.04 8.81 -129.99 -1.15 -9.19 16
9 C 0.02 0.19 10.48 113.37 1.19 1.38 16
10 C 0.51 12.29 5.98 87.66 0.52 12.82 16
11 O -0.57 -19.28 16.51 15.96 0.26 -19.01 16
12 N -0.71 -14.56 4.28 -463.06 -1.98 -16.54 16
13 C 0.01 0.24 2.66 86.38 0.23 0.47 16
14 C -0.07 -1.77 2.76 -10.70 -0.03 -1.80 16
15 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16
16 C -0.12 -3.37 5.37 30.88 0.17 -3.20 16
17 C 0.14 5.25 4.32 45.43 0.20 5.44 16
18 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16
19 C -0.15 -4.91 5.75 32.14 0.18 -4.72 16
20 C -0.16 -5.48 5.49 32.14 0.18 -5.31 16
21 C 0.13 5.06 2.74 45.43 0.12 5.19 16
22 H 0.04 1.85 2.91 -2.39 -0.01 1.84 16
23 C -0.12 -3.69 5.27 30.88 0.16 -3.53 16
24 N -0.62 -28.33 2.56 -637.21 -1.63 -29.96 16
25 C -0.22 -12.27 10.84 84.03 0.91 -11.36 16
26 H 0.05 3.38 8.06 -2.91 -0.02 3.35 16
27 C -0.04 -2.37 5.50 84.86 0.47 -1.91 16
28 N -0.97 -62.20 13.97 21.65 0.30 -61.90 16
29 Si 0.95 47.25 24.62 68.60 1.69 48.94 16
30 H -0.28 -13.43 6.98 99.48 0.69 -12.74 16
31 H -0.32 -16.70 7.11 99.48 0.71 -15.99 16
32 H -0.23 -10.78 4.31 99.48 0.43 -10.35 16
33 H 0.05 0.69 6.52 -2.39 -0.02 0.68 16
34 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16
35 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16
36 H 0.07 0.80 6.10 -2.38 -0.01 0.79 16
37 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16
38 H 0.03 0.79 7.42 -2.39 -0.02 0.78 16
39 H 0.06 1.27 7.54 -2.39 -0.02 1.25 16
40 H 0.07 1.24 6.52 -2.39 -0.02 1.23 16
41 H 0.07 0.56 5.57 -2.39 -0.01 0.55 16
42 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16
43 H 0.05 0.52 7.97 -2.39 -0.02 0.50 16
44 H 0.41 6.06 7.06 -92.70 -0.65 5.41 16
45 H 0.17 4.85 1.12 -108.67 -0.12 4.72 16
46 H 0.06 1.44 7.97 -2.38 -0.02 1.42 16
47 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16
48 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16
49 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16
50 H 0.12 3.29 4.83 -2.39 -0.01 3.27 16
51 H 0.12 3.59 4.04 -2.38 -0.01 3.58 16
52 H 0.05 1.75 6.53 -2.39 -0.02 1.74 16
53 H 0.08 1.90 6.76 -2.39 -0.02 1.88 16
54 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16
55 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16
Total: -1.00 -76.05 385.55 3.12 -72.92
By element:
Atomic # 1 Polarization: 26.28 SS G_CDS: -0.16 Total: 26.11 kcal
Atomic # 6 Polarization: -17.17 SS G_CDS: 5.79 Total: -11.38 kcal
Atomic # 7 Polarization: -105.09 SS G_CDS: -3.31 Total: -108.40 kcal
Atomic # 8 Polarization: -27.32 SS G_CDS: -0.88 Total: -28.20 kcal
Atomic # 14 Polarization: 47.25 SS G_CDS: 1.69 Total: 48.94 kcal
Total: -76.05 3.12 -72.92 kcal
The number of atoms in the molecule is 55
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001484388754.mol2 55
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 88.473 kcal
(2) G-P(sol) polarization free energy of solvation -76.047 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.426 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.124 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.923 kcal
(6) G-S(sol) free energy of system = (1) + (5) 15.550 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.22 seconds