Wall clock time and date at job start Tue Mar 31 2020 22:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47136 * 2 1 4 4 H 1.09004 * 109.47260 * 185.20536 * 3 2 1 5 5 C 1.52998 * 109.47328 * 65.20432 * 3 2 1 6 6 C 1.53004 * 109.46909 * 65.74217 * 5 3 2 7 7 C 1.52997 * 109.46915 * 65.14977 * 6 5 3 8 8 C 1.53002 * 109.46809 * 185.14963 * 6 5 3 9 9 C 1.50705 * 109.47104 * 305.20298 * 3 2 1 10 10 O 1.21285 * 119.99602 * 110.25232 * 9 3 2 11 11 N 1.34775 * 120.00450 * 290.25662 * 9 3 2 12 12 C 1.46491 * 120.00284 * 175.02515 * 11 9 3 13 13 C 1.53003 * 109.47193 * 179.97438 * 12 11 9 14 14 H 1.08996 * 109.89850 * 59.48699 * 13 12 11 15 15 C 1.54477 * 109.82986 * 180.42119 * 13 12 11 16 16 C 1.55509 * 102.38351 * 140.87649 * 15 13 12 17 17 C 1.53886 * 100.75874 * 327.02852 * 16 15 13 18 18 C 1.52377 * 115.67500 * 263.23938 * 17 16 15 19 19 N 1.47276 * 87.70112 * 218.75028 * 18 17 16 20 20 C 1.36938 * 135.93533 * 206.16322 * 19 18 17 21 21 H 1.07998 * 119.99679 * 359.97438 * 20 19 18 22 22 C 1.38812 * 120.00158 * 179.97438 * 20 19 18 23 23 N 1.31617 * 120.00036 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99811 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47179 * 60.00104 * 24 22 20 26 26 H 1.48502 * 109.46972 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47300 * 299.99538 * 24 22 20 28 28 C 1.47274 * 88.13129 * 26.17702 * 19 18 17 29 29 O 1.42403 * 106.66798 * 34.98099 * 17 16 15 30 30 H 1.09000 * 109.47033 * 55.69985 * 1 2 3 31 31 H 1.09000 * 109.46842 * 175.69665 * 1 2 3 32 32 H 1.08995 * 109.47241 * 295.69629 * 1 2 3 33 33 H 1.08998 * 109.46870 * 239.99971 * 2 1 3 34 34 H 1.08994 * 109.47169 * 120.00202 * 2 1 3 35 35 H 1.09002 * 109.47259 * 185.74417 * 5 3 2 36 36 H 1.09000 * 109.47039 * 305.74175 * 5 3 2 37 37 H 1.08994 * 109.46865 * 305.14620 * 6 5 3 38 38 H 1.08998 * 109.47163 * 60.00060 * 7 6 5 39 39 H 1.09003 * 109.46639 * 180.02562 * 7 6 5 40 40 H 1.08995 * 109.47479 * 299.99643 * 7 6 5 41 41 H 1.08991 * 109.47496 * 304.63280 * 8 6 5 42 42 H 1.09003 * 109.46982 * 64.63615 * 8 6 5 43 43 H 1.09000 * 109.46579 * 184.62935 * 8 6 5 44 44 H 0.97003 * 119.99471 * 355.02689 * 11 9 3 45 45 H 1.08999 * 109.47209 * 59.99598 * 12 11 9 46 46 H 1.09004 * 109.47589 * 300.00153 * 12 11 9 47 47 H 1.09001 * 110.82325 * 259.10075 * 15 13 12 48 48 H 1.08999 * 110.82433 * 22.45935 * 15 13 12 49 49 H 1.08998 * 111.16066 * 209.15198 * 16 15 13 50 50 H 1.09003 * 111.15917 * 84.90070 * 16 15 13 51 51 H 1.08998 * 113.51606 * 104.04192 * 18 17 16 52 52 H 1.08999 * 113.51566 * 333.45355 * 18 17 16 53 53 H 0.97000 * 120.00084 * 180.02562 * 23 22 20 54 54 H 1.08997 * 113.51586 * 88.53556 * 28 19 18 55 55 H 1.09005 * 113.51393 * 219.05275 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1260 1.4439 -0.0932 5 6 1.6397 2.1250 1.3095 6 6 2.3675 1.4553 2.4769 7 6 3.8729 1.6939 2.3435 8 6 1.8716 2.0509 3.7961 9 6 1.4352 2.1891 -1.1610 10 8 0.6128 3.0579 -0.9610 11 7 1.8081 1.8915 -2.4215 12 6 1.1427 2.5392 -3.5545 13 6 1.7506 2.0290 -4.8626 14 1 1.6263 0.9485 -4.9329 15 6 1.0618 2.7150 -6.0632 16 6 2.2510 2.9597 -7.0348 17 6 3.3934 3.2075 -6.0339 18 6 3.7047 4.6691 -5.7360 19 7 5.1306 4.3008 -5.7213 20 6 6.2667 4.7880 -5.1321 21 1 6.2144 5.6605 -4.4978 22 6 7.4855 4.1604 -5.3501 23 7 7.5491 3.0968 -6.1227 24 14 9.0353 4.8255 -4.5469 25 1 8.8777 4.8001 -3.0705 26 1 10.1948 3.9827 -4.9351 27 1 9.2655 6.2220 -4.9963 28 6 4.8006 3.1796 -6.6174 29 8 3.1457 2.3632 -4.9142 30 1 -0.3633 0.5791 -0.8490 31 1 -0.3633 -1.0248 -0.0771 32 1 -0.3633 0.4456 0.9260 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 1.9127 3.1795 1.2679 36 1 0.5629 2.0339 1.4523 37 1 2.1668 0.3841 2.4636 38 1 4.0735 2.7652 2.3567 39 1 4.3914 1.2164 3.1750 40 1 4.2262 1.2697 1.4038 41 1 1.9970 3.1334 3.7759 42 1 0.8170 1.8097 3.9299 43 1 2.4474 1.6337 4.6222 44 1 2.5171 1.2483 -2.5784 45 1 1.2791 3.6185 -3.4874 46 1 0.0782 2.3056 -3.5327 47 1 0.3220 2.0541 -6.5149 48 1 0.6042 3.6570 -5.7610 49 1 2.0762 3.8371 -7.6575 50 1 2.4476 2.0788 -7.6459 51 1 3.3322 5.0047 -4.7682 52 1 3.4386 5.3449 -6.5488 53 1 8.4008 2.6580 -6.2748 54 1 4.8384 3.4422 -7.6746 55 1 5.3487 2.2652 -6.3900 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484787878.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:34 Heat of formation + Delta-G solvation = -71.269756 kcal Electronic energy + Delta-G solvation = -31024.409002 eV Core-core repulsion = 27061.500828 eV Total energy + Delta-G solvation = -3962.908174 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 2.46 seconds Orbital eigenvalues (eV) -41.57701 -41.02595 -38.37897 -37.83704 -35.60026 -34.66229 -34.13441 -33.08826 -30.87424 -29.89843 -28.68749 -28.01754 -26.56516 -26.19187 -25.11110 -23.66911 -22.93225 -22.48919 -21.17661 -20.49269 -19.85239 -18.72700 -17.93431 -17.74319 -17.19952 -16.95590 -16.75276 -16.26960 -16.22019 -15.64843 -15.50461 -15.06484 -14.92080 -14.80687 -14.55927 -14.34781 -14.18922 -14.00683 -13.87780 -13.52114 -13.29641 -13.16860 -13.09780 -13.04390 -12.81150 -12.76878 -12.69604 -12.55168 -12.49329 -12.31289 -12.15532 -12.07958 -11.74705 -11.64333 -11.61631 -11.37589 -11.33838 -11.24862 -11.24197 -10.94970 -10.65937 -10.25380 -10.05576 -8.93779 -7.91925 -5.24504 1.41949 1.45987 1.52122 1.67214 2.21126 2.45248 2.79599 3.29807 3.43423 3.53313 3.66887 3.73820 3.75605 3.85587 3.88706 3.94958 4.12686 4.16299 4.22503 4.29323 4.36011 4.44569 4.51272 4.55939 4.60110 4.69253 4.70359 4.72236 4.81550 4.82684 4.83886 4.90087 4.96732 4.98841 4.99456 5.03427 5.09819 5.11658 5.13977 5.16763 5.20123 5.22300 5.28364 5.29648 5.32941 5.41397 5.46785 5.49958 5.50541 5.58138 5.91333 6.37822 6.56035 6.89300 7.26083 7.57674 8.58742 9.25524 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.009146 B = 0.003323 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3060.628134 B = 8423.555870 C =10748.301986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.109 4.109 3 C -0.109 4.109 4 H 0.099 0.901 5 C -0.090 4.090 6 C -0.092 4.092 7 C -0.154 4.154 8 C -0.147 4.147 9 C 0.516 3.484 10 O -0.586 6.586 11 N -0.718 5.718 12 C 0.117 3.883 13 C 0.062 3.938 14 H 0.105 0.895 15 C -0.133 4.133 16 C -0.128 4.128 17 C 0.080 3.920 18 C 0.103 3.897 19 N -0.638 5.638 20 C -0.233 4.233 21 H 0.076 0.924 22 C -0.063 4.063 23 N -0.950 5.950 24 Si 0.979 3.021 25 H -0.279 1.279 26 H -0.289 1.289 27 H -0.276 1.276 28 C 0.159 3.841 29 O -0.362 6.362 30 H 0.033 0.967 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.041 0.959 36 H 0.067 0.933 37 H 0.089 0.911 38 H 0.042 0.958 39 H 0.065 0.935 40 H 0.055 0.945 41 H 0.044 0.956 42 H 0.058 0.942 43 H 0.065 0.935 44 H 0.410 0.590 45 H 0.043 0.957 46 H 0.089 0.911 47 H 0.117 0.883 48 H 0.083 0.917 49 H 0.098 0.902 50 H 0.092 0.908 51 H 0.032 0.968 52 H 0.062 0.938 53 H 0.249 0.751 54 H 0.039 0.961 55 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.114 -9.513 10.157 22.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.146 4.146 3 C -0.130 4.130 4 H 0.117 0.883 5 C -0.128 4.128 6 C -0.110 4.110 7 C -0.211 4.211 8 C -0.204 4.204 9 C 0.304 3.696 10 O -0.467 6.467 11 N -0.369 5.369 12 C -0.007 4.007 13 C 0.004 3.996 14 H 0.123 0.877 15 C -0.171 4.171 16 C -0.166 4.166 17 C 0.039 3.961 18 C -0.022 4.022 19 N -0.364 5.364 20 C -0.361 4.361 21 H 0.094 0.906 22 C -0.256 4.256 23 N -0.599 5.599 24 Si 0.806 3.194 25 H -0.205 1.205 26 H -0.214 1.214 27 H -0.202 1.202 28 C 0.034 3.966 29 O -0.281 6.281 30 H 0.052 0.948 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.114 0.886 35 H 0.060 0.940 36 H 0.086 0.914 37 H 0.107 0.893 38 H 0.061 0.939 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.063 0.937 42 H 0.077 0.923 43 H 0.084 0.916 44 H 0.245 0.755 45 H 0.061 0.939 46 H 0.107 0.893 47 H 0.135 0.865 48 H 0.102 0.898 49 H 0.117 0.883 50 H 0.110 0.890 51 H 0.051 0.949 52 H 0.079 0.921 53 H 0.058 0.942 54 H 0.057 0.943 55 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -17.207 -8.943 10.518 22.061 hybrid contribution 1.521 0.683 -0.062 1.668 sum -15.687 -8.260 10.455 20.582 Atomic orbital electron populations 1.21822 0.95634 1.02102 1.01396 1.21541 0.96293 0.92510 1.04259 1.21503 1.01752 0.97137 0.92592 0.88261 1.21424 1.00752 0.98347 0.92320 1.21164 0.94869 1.00923 0.94064 1.21948 0.95748 1.01283 1.02139 1.21827 1.01370 1.00541 0.96650 1.21148 0.81296 0.82391 0.84764 1.90644 1.36318 1.33941 1.85781 1.45952 1.39831 1.45613 1.05474 1.21746 0.97042 0.96869 0.85056 1.23322 0.81302 1.00693 0.94281 0.87705 1.23090 0.98032 1.02377 0.93561 1.22958 0.92341 1.04088 0.97254 1.22942 0.95843 0.90498 0.86792 1.22956 0.84506 0.96020 0.98738 1.45824 1.03239 1.33131 1.54169 1.19215 0.85257 1.09330 1.22332 0.90586 1.25594 1.00369 0.98552 1.01128 1.70001 1.24885 1.22534 1.42445 0.85162 0.78641 0.77526 0.78062 1.20536 1.21430 1.20233 1.22064 0.90193 0.91859 0.92510 1.88343 1.25151 1.66540 1.48098 0.94795 0.90932 0.92404 0.90654 0.88556 0.93978 0.91429 0.89274 0.93891 0.91548 0.92576 0.93656 0.92251 0.91604 0.75472 0.93887 0.89256 0.86485 0.89820 0.88342 0.88967 0.94928 0.92098 0.94180 0.94343 0.94391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 9.34 71.98 0.67 -1.87 16 2 C -0.11 -1.70 5.58 30.59 0.17 -1.53 16 3 C -0.11 -2.33 2.37 -11.54 -0.03 -2.36 16 4 H 0.10 2.11 6.32 -2.39 -0.02 2.09 16 5 C -0.09 -1.95 3.33 30.59 0.10 -1.85 16 6 C -0.09 -1.50 2.80 -10.79 -0.03 -1.53 16 7 C -0.15 -2.69 8.96 71.98 0.64 -2.05 16 8 C -0.15 -2.21 9.19 71.98 0.66 -1.55 16 9 C 0.52 14.64 5.47 87.66 0.48 15.12 16 10 O -0.59 -20.85 16.04 -3.05 -0.05 -20.90 16 11 N -0.72 -19.11 5.47 -463.06 -2.53 -21.64 16 12 C 0.12 3.05 5.24 86.38 0.45 3.50 16 13 C 0.06 1.52 3.62 31.10 0.11 1.63 16 14 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 15 C -0.13 -2.57 6.56 31.96 0.21 -2.36 16 16 C -0.13 -3.18 6.49 31.76 0.21 -2.97 16 17 C 0.08 3.00 1.55 -10.91 -0.02 2.98 16 18 C 0.10 4.42 8.25 83.48 0.69 5.11 16 19 N -0.64 -34.74 3.79 -740.53 -2.81 -37.55 16 20 C -0.23 -13.92 10.74 84.03 0.90 -13.01 16 21 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 22 C -0.06 -3.75 5.50 84.86 0.47 -3.28 16 23 N -0.95 -58.90 11.52 21.65 0.25 -58.65 16 24 Si 0.98 47.32 29.55 68.60 2.03 49.35 16 25 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 26 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 27 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 28 C 0.16 7.76 6.95 83.48 0.58 8.34 16 29 O -0.36 -13.37 10.68 -148.98 -1.59 -14.96 16 30 H 0.03 0.71 6.90 -2.39 -0.02 0.69 16 31 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.06 0.98 6.66 -2.39 -0.02 0.96 16 33 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.10 1.16 6.27 -2.39 -0.01 1.14 16 35 H 0.04 1.11 8.08 -2.39 -0.02 1.09 16 36 H 0.07 1.51 6.41 -2.39 -0.02 1.49 16 37 H 0.09 1.18 6.27 -2.39 -0.01 1.16 16 38 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.06 1.00 6.45 -2.39 -0.02 0.99 16 41 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.41 10.13 8.40 -92.71 -0.78 9.35 16 45 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 47 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 48 H 0.08 1.58 7.85 -2.39 -0.02 1.56 16 49 H 0.10 2.17 7.93 -2.39 -0.02 2.15 16 50 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 51 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 52 H 0.06 2.35 7.98 -2.39 -0.02 2.33 16 53 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 54 H 0.04 1.84 8.13 -2.39 -0.02 1.82 16 55 H 0.04 2.12 7.16 -2.38 -0.02 2.10 16 Total: -1.00 -77.33 423.11 1.65 -75.68 By element: Atomic # 1 Polarization: 26.29 SS G_CDS: 0.07 Total: 26.37 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: 6.27 Total: 2.32 kcal Atomic # 7 Polarization: -112.76 SS G_CDS: -5.09 Total: -117.85 kcal Atomic # 8 Polarization: -34.22 SS G_CDS: -1.64 Total: -35.86 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 2.03 Total: 49.35 kcal Total: -77.33 1.65 -75.68 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484787878.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.409 kcal (2) G-P(sol) polarization free energy of solvation -77.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.46 seconds