Wall clock time and date at job start Tue Mar 31 2020 22:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47116 * 2 1 4 4 H 1.09002 * 109.47170 * 305.49825 * 3 2 1 5 5 C 1.52998 * 109.47221 * 65.50072 * 3 2 1 6 6 C 1.53004 * 109.46954 * 186.70493 * 5 3 2 7 7 C 1.52995 * 109.47253 * 65.55133 * 6 5 3 8 8 C 1.53007 * 109.46819 * 185.55448 * 6 5 3 9 9 C 1.50698 * 109.47065 * 185.49929 * 3 2 1 10 10 O 1.21279 * 120.00545 * 240.00054 * 9 3 2 11 11 N 1.34781 * 119.99849 * 59.99597 * 9 3 2 12 12 C 1.46497 * 119.99797 * 179.97438 * 11 9 3 13 13 C 1.52999 * 109.47207 * 179.72808 * 12 11 9 14 14 H 1.09004 * 110.26943 * 60.62209 * 13 12 11 15 15 C 1.55008 * 110.30629 * 182.79836 * 13 12 11 16 16 C 1.55455 * 101.03008 * 155.00889 * 15 13 12 17 17 C 1.53770 * 102.01835 * 326.41510 * 16 15 13 18 18 C 1.53270 * 114.73503 * 151.73569 * 17 16 15 19 19 N 1.47709 * 85.91459 * 92.61130 * 18 17 16 20 20 C 1.36936 * 134.43866 * 204.18694 * 19 18 17 21 21 H 1.08003 * 120.00049 * 174.74742 * 20 19 18 22 22 C 1.38810 * 120.00083 * 354.75645 * 20 19 18 23 23 N 1.31622 * 119.99932 * 5.00307 * 22 20 19 24 24 Si 1.86800 * 120.00297 * 185.00872 * 22 20 19 25 25 H 1.48494 * 109.47302 * 94.99469 * 24 22 20 26 26 H 1.48498 * 109.47006 * 214.99612 * 24 22 20 27 27 H 1.48498 * 109.46615 * 334.99593 * 24 22 20 28 28 C 1.47710 * 91.12232 * 24.15978 * 19 18 17 29 29 O 1.42532 * 108.38097 * 20.94502 * 17 16 15 30 30 H 1.08996 * 109.46991 * 64.73894 * 1 2 3 31 31 H 1.09000 * 109.47501 * 184.74366 * 1 2 3 32 32 H 1.08998 * 109.46880 * 304.74275 * 1 2 3 33 33 H 1.08999 * 109.47076 * 239.99832 * 2 1 3 34 34 H 1.09004 * 109.46995 * 119.99596 * 2 1 3 35 35 H 1.09001 * 109.47070 * 306.69864 * 5 3 2 36 36 H 1.08997 * 109.47249 * 66.70265 * 5 3 2 37 37 H 1.08997 * 109.47042 * 305.55158 * 6 5 3 38 38 H 1.09003 * 109.46932 * 64.73259 * 7 6 5 39 39 H 1.08998 * 109.46966 * 184.72981 * 7 6 5 40 40 H 1.09000 * 109.47402 * 304.72804 * 7 6 5 41 41 H 1.08991 * 109.47175 * 59.99996 * 8 6 5 42 42 H 1.09001 * 109.46747 * 179.97438 * 8 6 5 43 43 H 1.08997 * 109.47077 * 299.99688 * 8 6 5 44 44 H 0.96995 * 119.99865 * 359.72994 * 11 9 3 45 45 H 1.09001 * 109.47655 * 299.73108 * 12 11 9 46 46 H 1.08999 * 109.47167 * 59.73032 * 12 11 9 47 47 H 1.08989 * 111.10681 * 272.95398 * 15 13 12 48 48 H 1.09003 * 111.10288 * 37.07056 * 15 13 12 49 49 H 1.08995 * 110.92469 * 208.23437 * 16 15 13 50 50 H 1.08999 * 110.91790 * 84.58817 * 16 15 13 51 51 H 1.08990 * 113.80248 * 206.86882 * 18 17 16 52 52 H 1.09003 * 113.79279 * 338.36208 * 18 17 16 53 53 H 0.96998 * 119.99863 * 179.97438 * 23 22 20 54 54 H 1.09007 * 113.80056 * 221.59381 * 28 19 18 55 55 H 1.08996 * 113.80529 * 90.09589 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5985 1.9840 -0.8367 5 6 1.6461 2.1227 1.3126 6 6 2.0072 3.6080 1.2457 7 6 1.1535 4.2928 0.1766 8 6 1.7419 4.2591 2.6047 9 6 3.5408 1.4447 -0.1362 10 8 4.2278 1.9413 0.7312 11 7 4.1198 0.8945 -1.2219 12 6 5.5787 0.8971 -1.3545 13 6 5.9731 0.2107 -2.6637 14 1 5.5464 0.7441 -3.5132 15 6 7.5163 0.1400 -2.7905 16 6 7.6814 -1.0830 -3.7359 17 6 6.5015 -1.9746 -3.3150 18 6 5.9600 -2.8864 -4.4216 19 7 6.8937 -3.9028 -3.8953 20 6 7.5088 -5.0055 -4.4253 21 1 8.2321 -5.5539 -3.8400 22 6 7.2028 -5.4183 -5.7148 23 7 6.3970 -4.6955 -6.4634 24 14 7.9346 -6.9999 -6.3876 25 1 6.9758 -8.1152 -6.1831 26 1 8.2071 -6.8411 -7.8387 27 1 9.2027 -7.3004 -5.6757 28 6 6.8990 -3.2531 -2.5688 29 8 5.5323 -1.1588 -2.6617 30 1 -0.3633 0.4385 -0.9294 31 1 -0.3634 -1.0241 0.0850 32 1 -0.3633 0.5857 0.8444 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8901 35 1 0.5726 2.0166 1.4689 36 1 2.1816 1.6554 2.1390 37 1 3.0618 3.7144 0.9916 38 1 0.1050 4.2598 0.4729 39 1 1.4684 5.3309 0.0701 40 1 1.2787 3.7757 -0.7747 41 1 2.3501 3.7712 3.3662 42 1 1.9996 5.3171 2.5571 43 1 0.6873 4.1527 2.8588 44 1 3.5706 0.4937 -1.9137 45 1 5.9413 1.9250 -1.3596 46 1 6.0208 0.3602 -0.5153 47 1 7.9145 1.0459 -3.2473 48 1 7.9815 -0.0465 -1.8225 49 1 8.6320 -1.5861 -3.5591 50 1 7.5895 -0.7831 -4.7798 51 1 4.9093 -3.1493 -4.3000 52 1 6.2015 -2.5467 -5.4288 53 1 6.1835 -4.9838 -7.3646 54 1 7.8851 -3.2043 -2.1067 55 1 6.1289 -3.6258 -1.8933 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484787879.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:39 Heat of formation + Delta-G solvation = -75.783922 kcal Electronic energy + Delta-G solvation = -30532.214720 eV Core-core repulsion = 26569.110797 eV Total energy + Delta-G solvation = -3963.103923 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.47302 -40.97817 -38.29647 -37.54164 -35.72766 -34.91823 -34.08916 -33.06852 -30.79669 -29.77629 -28.65392 -27.97385 -26.76205 -26.21012 -24.87043 -23.52010 -22.60137 -22.36141 -21.23235 -20.52016 -20.35043 -18.79166 -18.18321 -17.79537 -17.06920 -17.02428 -16.41443 -16.15362 -16.00670 -15.62056 -15.60758 -15.15908 -14.95690 -14.83916 -14.54057 -14.15954 -14.12195 -14.01251 -13.48930 -13.41248 -13.34097 -13.26097 -12.99697 -12.98395 -12.85790 -12.83355 -12.62847 -12.48593 -12.43543 -12.24217 -12.08717 -12.01792 -11.88950 -11.83727 -11.65602 -11.52125 -11.48300 -11.32601 -11.17433 -10.88248 -10.54207 -10.26343 -10.01568 -8.97330 -7.94872 -5.28354 1.44743 1.46998 1.55813 1.69385 2.23253 2.42499 2.79160 3.23398 3.43164 3.59633 3.66603 3.70612 3.77338 3.82739 3.89794 3.91794 4.15783 4.17135 4.28541 4.32472 4.39066 4.48472 4.56272 4.59885 4.64016 4.65358 4.72723 4.82278 4.83587 4.84174 4.90677 4.91382 4.94939 4.97652 4.98944 5.06201 5.09586 5.14425 5.17387 5.18310 5.21068 5.22358 5.26557 5.34468 5.37339 5.45820 5.48389 5.48944 5.56991 5.66085 5.86503 6.25079 6.59449 6.87946 7.30372 7.55837 8.51546 9.22909 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.020607 B = 0.002181 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.410003 B =12833.693292 C =13591.315194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C -0.103 4.103 4 H 0.117 0.883 5 C -0.091 4.091 6 C -0.105 4.105 7 C -0.146 4.146 8 C -0.141 4.141 9 C 0.512 3.488 10 O -0.576 6.576 11 N -0.719 5.719 12 C 0.130 3.870 13 C 0.065 3.935 14 H 0.090 0.910 15 C -0.133 4.133 16 C -0.112 4.112 17 C 0.083 3.917 18 C 0.164 3.836 19 N -0.631 5.631 20 C -0.235 4.235 21 H 0.086 0.914 22 C -0.065 4.065 23 N -0.951 5.951 24 Si 0.980 3.020 25 H -0.289 1.289 26 H -0.292 1.292 27 H -0.265 1.265 28 C 0.115 3.885 29 O -0.374 6.374 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.055 0.945 35 H 0.089 0.911 36 H 0.049 0.951 37 H 0.058 0.942 38 H 0.065 0.935 39 H 0.051 0.949 40 H 0.056 0.944 41 H 0.043 0.957 42 H 0.054 0.946 43 H 0.063 0.937 44 H 0.411 0.589 45 H 0.090 0.910 46 H 0.057 0.943 47 H 0.112 0.888 48 H 0.087 0.913 49 H 0.077 0.923 50 H 0.074 0.926 51 H 0.010 0.990 52 H 0.047 0.953 53 H 0.250 0.750 54 H 0.062 0.938 55 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.919 18.994 12.560 24.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C -0.124 4.124 4 H 0.135 0.865 5 C -0.129 4.129 6 C -0.124 4.124 7 C -0.203 4.203 8 C -0.199 4.199 9 C 0.300 3.700 10 O -0.456 6.456 11 N -0.371 5.371 12 C 0.006 3.994 13 C 0.008 3.992 14 H 0.108 0.892 15 C -0.171 4.171 16 C -0.150 4.150 17 C 0.042 3.958 18 C 0.038 3.962 19 N -0.359 5.359 20 C -0.363 4.363 21 H 0.104 0.896 22 C -0.258 4.258 23 N -0.599 5.599 24 Si 0.808 3.192 25 H -0.216 1.216 26 H -0.218 1.218 27 H -0.190 1.190 28 C -0.010 4.010 29 O -0.293 6.293 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.107 0.893 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.062 0.938 42 H 0.073 0.927 43 H 0.082 0.918 44 H 0.247 0.753 45 H 0.108 0.892 46 H 0.076 0.924 47 H 0.131 0.869 48 H 0.105 0.895 49 H 0.096 0.904 50 H 0.093 0.907 51 H 0.027 0.973 52 H 0.066 0.934 53 H 0.059 0.941 54 H 0.080 0.920 55 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -9.524 19.059 13.041 24.981 hybrid contribution 0.264 -1.526 -0.995 1.841 sum -9.261 17.533 12.046 23.201 Atomic orbital electron populations 1.21813 0.93539 1.02373 1.02926 1.21505 0.97860 0.93668 1.02337 1.21505 0.89913 0.98989 1.01945 0.86533 1.21494 1.01705 0.94630 0.95031 1.21204 1.00221 0.94695 0.96243 1.21896 1.00085 1.00057 0.98273 1.21765 1.01701 1.00182 0.96206 1.21171 0.91676 0.76487 0.80633 1.90644 1.66204 1.47123 1.41619 1.45988 1.07824 1.59716 1.23547 1.21462 0.80929 1.00650 0.96329 1.23399 0.95320 0.83240 0.97251 0.89246 1.23252 0.94223 0.98929 1.00706 1.22575 0.97138 0.95071 1.00206 1.23750 0.89355 0.89941 0.92751 1.22348 0.91766 0.86201 0.95909 1.45959 1.51770 1.30002 1.08169 1.19369 1.17184 1.02408 0.97303 0.89648 1.25678 1.00652 1.02220 0.97287 1.70019 1.40978 1.39800 1.09110 0.85039 0.78057 0.78965 0.77160 1.21636 1.21847 1.18972 1.22932 0.98832 0.90341 0.88902 1.88326 1.44742 1.17936 1.78269 0.91558 0.92407 0.91428 0.91534 0.92664 0.89258 0.93229 0.92313 0.91589 0.92959 0.92518 0.93819 0.92716 0.91758 0.75313 0.89170 0.92437 0.86942 0.89486 0.90421 0.90711 0.97256 0.93437 0.94093 0.92005 0.94591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.79 71.98 0.70 -1.13 16 2 C -0.12 -1.87 5.35 30.59 0.16 -1.71 16 3 C -0.10 -1.72 2.08 -11.54 -0.02 -1.74 16 4 H 0.12 1.54 6.21 -2.39 -0.01 1.53 16 5 C -0.09 -1.52 3.69 30.59 0.11 -1.41 16 6 C -0.11 -1.82 2.72 -10.79 -0.03 -1.85 16 7 C -0.15 -1.93 9.07 71.98 0.65 -1.28 16 8 C -0.14 -2.19 9.19 71.98 0.66 -1.52 16 9 C 0.51 11.85 6.83 87.66 0.60 12.45 16 10 O -0.58 -17.25 14.10 -3.03 -0.04 -17.29 16 11 N -0.72 -15.46 5.34 -463.07 -2.47 -17.93 16 12 C 0.13 2.88 5.40 86.38 0.47 3.34 16 13 C 0.07 1.53 3.52 31.28 0.11 1.64 16 14 H 0.09 1.87 8.14 -2.38 -0.02 1.86 16 15 C -0.13 -2.89 6.58 32.13 0.21 -2.68 16 16 C -0.11 -3.47 6.32 31.70 0.20 -3.27 16 17 C 0.08 3.11 1.68 -10.31 -0.02 3.10 16 18 C 0.16 8.01 6.95 86.23 0.60 8.61 16 19 N -0.63 -32.99 3.67 -732.79 -2.69 -35.68 16 20 C -0.23 -13.26 10.70 84.03 0.90 -12.36 16 21 H 0.09 4.60 7.83 -2.91 -0.02 4.58 16 22 C -0.07 -3.71 5.50 84.86 0.47 -3.25 16 23 N -0.95 -57.35 11.48 21.65 0.25 -57.10 16 24 Si 0.98 45.61 29.56 68.60 2.03 47.64 16 25 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 26 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 27 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 28 C 0.12 4.87 8.37 86.24 0.72 5.59 16 29 O -0.37 -12.16 10.67 -148.98 -1.59 -13.75 16 30 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.07 0.71 6.25 -2.39 -0.01 0.70 16 33 H 0.07 1.14 7.41 -2.39 -0.02 1.12 16 34 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.09 1.13 6.21 -2.39 -0.01 1.12 16 36 H 0.05 1.04 7.89 -2.39 -0.02 1.02 16 37 H 0.06 1.37 6.03 -2.39 -0.01 1.35 16 38 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.06 0.71 6.25 -2.39 -0.01 0.69 16 41 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.41 7.92 7.76 -92.71 -0.72 7.20 16 45 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 47 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 48 H 0.09 1.79 8.05 -2.39 -0.02 1.77 16 49 H 0.08 2.52 7.83 -2.39 -0.02 2.50 16 50 H 0.07 2.38 8.01 -2.39 -0.02 2.36 16 51 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 52 H 0.05 2.54 7.19 -2.39 -0.02 2.52 16 53 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 54 H 0.06 2.39 7.98 -2.38 -0.02 2.37 16 55 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -70.55 423.08 2.11 -68.44 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: 0.13 Total: 23.15 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: 6.50 Total: 2.53 kcal Atomic # 7 Polarization: -105.80 SS G_CDS: -4.91 Total: -110.72 kcal Atomic # 8 Polarization: -29.41 SS G_CDS: -1.63 Total: -31.05 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -70.55 2.11 -68.44 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484787879.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.345 kcal (2) G-P(sol) polarization free energy of solvation -70.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds