Wall clock time and date at job start Tue Mar 31 2020 22:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.47100 * 2 1 4 4 C 1.53002 * 109.46721 * 119.99762 * 2 1 3 5 5 H 1.08998 * 109.48226 * 300.02241 * 4 2 1 6 6 C 1.53096 * 109.47915 * 180.02562 * 4 2 1 7 7 C 1.53172 * 109.16196 * 182.40946 * 6 4 2 8 8 H 1.09008 * 109.54409 * 176.93752 * 7 6 4 9 9 C 1.53001 * 109.54706 * 297.11365 * 7 6 4 10 10 C 1.50697 * 109.47266 * 185.00248 * 9 7 6 11 11 O 1.21281 * 120.00364 * 359.97438 * 10 9 7 12 12 N 1.34783 * 120.00012 * 180.02562 * 10 9 7 13 13 C 1.46500 * 120.00119 * 179.97438 * 12 10 9 14 14 C 1.52995 * 109.47108 * 179.97438 * 13 12 10 15 15 H 1.09002 * 112.85043 * 314.66487 * 14 13 12 16 16 C 1.53785 * 113.69093 * 85.93603 * 14 13 12 17 17 C 1.53779 * 87.08093 * 139.99088 * 16 14 13 18 18 H 1.08994 * 113.61314 * 220.01752 * 17 16 14 19 19 N 1.46502 * 113.69134 * 89.12362 * 17 16 14 20 20 C 1.36944 * 119.99667 * 107.46251 * 19 17 16 21 21 H 1.07994 * 119.99917 * 0.02562 * 20 19 17 22 22 C 1.38811 * 119.99790 * 180.02562 * 20 19 17 23 23 N 1.31618 * 120.00102 * 0.02562 * 22 20 19 24 24 Si 1.86793 * 120.00067 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.47228 * 90.00032 * 24 22 20 26 26 H 1.48498 * 109.47562 * 209.99814 * 24 22 20 27 27 H 1.48506 * 109.47203 * 330.00483 * 24 22 20 28 28 C 1.53781 * 113.61293 * 183.47228 * 14 13 12 29 29 C 1.53181 * 109.03718 * 56.98613 * 7 6 4 30 30 C 1.53098 * 109.15869 * 303.01341 * 29 7 6 31 31 O 1.42901 * 109.47965 * 60.06232 * 4 2 1 32 32 H 1.08999 * 109.47463 * 300.00408 * 1 2 3 33 33 H 1.09002 * 109.46493 * 60.00419 * 1 2 3 34 34 H 1.08997 * 109.46865 * 179.97438 * 1 2 3 35 35 H 1.08995 * 109.47571 * 240.00094 * 2 1 3 36 36 H 1.09008 * 109.46587 * 59.99819 * 3 2 1 37 37 H 1.08993 * 109.46904 * 179.97438 * 3 2 1 38 38 H 1.08992 * 109.47271 * 299.99782 * 3 2 1 39 39 H 1.09003 * 109.52267 * 62.50453 * 6 4 2 40 40 H 1.09000 * 109.52309 * 302.32061 * 6 4 2 41 41 H 1.09000 * 109.46609 * 64.99887 * 9 7 6 42 42 H 1.08996 * 109.47023 * 304.99893 * 9 7 6 43 43 H 0.96997 * 119.99419 * 359.97438 * 12 10 9 44 44 H 1.09005 * 109.46936 * 59.99437 * 13 12 10 45 45 H 1.09004 * 109.46937 * 300.00111 * 13 12 10 46 46 H 1.09003 * 113.60734 * 254.54208 * 16 14 13 47 47 H 1.08996 * 113.61146 * 25.43706 * 16 14 13 48 48 H 0.96999 * 120.00301 * 287.47041 * 19 17 16 49 49 H 0.97000 * 120.00382 * 179.97438 * 23 22 20 50 50 H 1.09005 * 113.61302 * 334.47929 * 28 14 13 51 51 H 1.08996 * 113.61527 * 105.30092 * 28 14 13 52 52 H 1.08992 * 109.52811 * 62.92072 * 29 7 6 53 53 H 1.08997 * 109.52136 * 183.11806 * 29 7 6 54 54 H 1.08997 * 109.48195 * 297.62688 * 30 29 7 55 55 H 1.09000 * 109.48638 * 177.59742 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6763 -0.2077 2.1394 6 6 3.5709 -0.7208 1.2499 7 6 4.0734 -1.4963 2.4715 8 1 5.1621 -1.5465 2.4491 9 6 3.6200 -0.7878 3.7496 10 6 4.2169 -1.4812 4.9471 11 8 4.9340 -2.4472 4.7935 12 7 3.9531 -1.0284 6.1888 13 6 4.5329 -1.7028 7.3530 14 6 4.0796 -0.9942 8.6310 15 1 4.1541 0.0911 8.5624 16 6 2.7230 -1.4863 9.1624 17 6 3.3276 -1.3853 10.5727 18 1 3.0423 -2.2067 11.2299 19 7 3.1521 -0.0710 11.1957 20 6 2.2595 0.0863 12.2223 21 1 1.6854 -0.7585 12.5730 22 6 2.0928 1.3317 12.8123 23 7 2.7922 2.3614 12.3846 24 14 0.8749 1.5466 14.2122 25 1 1.5602 1.3011 15.5066 26 1 0.3364 2.9303 14.1919 27 1 -0.2401 0.5790 14.0511 28 6 4.7030 -1.5747 9.9113 29 6 3.4925 -2.9133 2.4374 30 6 1.9646 -2.8290 2.3910 31 8 1.5648 -2.0689 1.2488 32 1 -0.3634 0.5139 0.8899 33 1 -0.3632 0.5138 -0.8901 34 1 -0.3633 -1.0276 -0.0005 35 1 1.8934 -0.5138 -0.8899 36 1 1.6766 1.9564 0.8901 37 1 3.1300 1.4425 0.0005 38 1 1.6768 1.9564 -0.8899 39 1 3.9349 0.3056 1.2951 40 1 3.9356 -1.1979 0.3402 41 1 2.5325 -0.8193 3.8161 42 1 3.9528 0.2498 3.7274 43 1 3.3793 -0.2560 6.3116 44 1 5.6205 -1.6714 7.2867 45 1 4.2001 -2.7405 7.3748 46 1 1.9056 -0.7870 8.9865 47 1 2.4808 -2.5060 8.8631 48 1 3.6679 0.6877 10.8809 49 1 2.6754 3.2318 12.7966 50 1 5.0020 -2.6187 9.8169 51 1 5.4849 -0.9475 10.3394 52 1 3.8556 -3.4347 1.5518 53 1 3.8004 -3.4547 3.3319 54 1 1.5996 -2.3436 3.2961 55 1 1.5469 -3.8335 2.3236 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001488871505.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:43 Heat of formation + Delta-G solvation = -99.934138 kcal Electronic energy + Delta-G solvation = -29915.903560 eV Core-core repulsion = 25951.752405 eV Total energy + Delta-G solvation = -3964.151155 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.51756 -40.45607 -39.68374 -36.40156 -36.00415 -35.39764 -34.92440 -32.13434 -31.03709 -30.23291 -28.24560 -27.72021 -26.44031 -25.74451 -25.23755 -24.53087 -23.12228 -21.77297 -21.15478 -20.14662 -19.67412 -19.29884 -17.97999 -17.46279 -17.10345 -17.04545 -16.70986 -16.64674 -15.93282 -15.68361 -15.49555 -15.29989 -15.03775 -14.93879 -14.70991 -14.56075 -14.46024 -14.03153 -13.76109 -13.70046 -13.30196 -13.26185 -12.96680 -12.94526 -12.91154 -12.66351 -12.60253 -12.35262 -12.23602 -12.15956 -12.06983 -12.05857 -11.89872 -11.69279 -11.55084 -11.48141 -11.33576 -11.01511 -10.95252 -10.87208 -10.63677 -10.22271 -9.98746 -9.00266 -7.95880 -5.24030 1.48060 1.48973 1.57421 1.67342 2.25989 2.55444 2.84124 3.36814 3.58574 3.70254 3.73151 3.76935 3.80142 3.89071 3.95579 4.03482 4.15571 4.16957 4.21635 4.27312 4.32875 4.36970 4.41055 4.42234 4.50951 4.61846 4.67018 4.72717 4.76919 4.79412 4.84195 4.85618 4.92234 4.95948 4.99197 5.05964 5.07263 5.11162 5.14616 5.19963 5.24725 5.30157 5.32239 5.34630 5.37539 5.48162 5.49952 5.50600 5.57579 5.66320 6.27975 6.36087 6.59052 7.28453 7.33046 8.10114 8.32471 9.27360 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013813 B = 0.001988 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.574057 B =14081.193397 C =15207.267219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.088 4.088 3 C -0.147 4.147 4 C 0.089 3.911 5 H 0.063 0.937 6 C -0.139 4.139 7 C -0.070 4.070 8 H 0.070 0.930 9 C -0.138 4.138 10 C 0.509 3.491 11 O -0.578 6.578 12 N -0.722 5.722 13 C 0.141 3.859 14 C -0.101 4.101 15 H 0.081 0.919 16 C -0.152 4.152 17 C 0.143 3.857 18 H 0.058 0.942 19 N -0.719 5.719 20 C -0.242 4.242 21 H 0.076 0.924 22 C -0.075 4.075 23 N -0.969 5.969 24 Si 0.972 3.028 25 H -0.288 1.288 26 H -0.296 1.296 27 H -0.270 1.270 28 C -0.136 4.136 29 C -0.151 4.151 30 C 0.061 3.939 31 O -0.393 6.393 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.049 0.951 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.094 0.906 40 H 0.071 0.929 41 H 0.105 0.895 42 H 0.117 0.883 43 H 0.411 0.589 44 H 0.060 0.940 45 H 0.065 0.935 46 H 0.048 0.952 47 H 0.090 0.910 48 H 0.374 0.626 49 H 0.251 0.749 50 H 0.104 0.896 51 H 0.057 0.943 52 H 0.065 0.935 53 H 0.073 0.927 54 H 0.051 0.949 55 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.162 -5.833 -26.817 27.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.106 4.106 3 C -0.204 4.204 4 C 0.032 3.968 5 H 0.081 0.919 6 C -0.177 4.177 7 C -0.089 4.089 8 H 0.089 0.911 9 C -0.178 4.178 10 C 0.297 3.703 11 O -0.458 6.458 12 N -0.373 5.373 13 C 0.017 3.983 14 C -0.120 4.120 15 H 0.099 0.901 16 C -0.192 4.192 17 C 0.033 3.967 18 H 0.076 0.924 19 N -0.358 5.358 20 C -0.374 4.374 21 H 0.094 0.906 22 C -0.267 4.267 23 N -0.619 5.619 24 Si 0.801 3.199 25 H -0.216 1.216 26 H -0.222 1.222 27 H -0.195 1.195 28 C -0.175 4.175 29 C -0.189 4.189 30 C -0.016 4.016 31 O -0.312 6.312 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.112 0.888 40 H 0.089 0.911 41 H 0.123 0.877 42 H 0.136 0.864 43 H 0.247 0.753 44 H 0.078 0.922 45 H 0.083 0.917 46 H 0.067 0.933 47 H 0.108 0.892 48 H 0.207 0.793 49 H 0.060 0.940 50 H 0.122 0.878 51 H 0.075 0.925 52 H 0.083 0.917 53 H 0.091 0.909 54 H 0.069 0.931 55 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.092 -6.630 -26.908 27.713 hybrid contribution -0.371 0.918 1.246 1.592 sum -0.280 -5.712 -25.661 26.291 Atomic orbital electron populations 1.21759 0.94821 1.01629 1.01882 1.21114 0.96387 0.96386 0.96736 1.21876 1.01724 0.94094 1.02699 1.22312 0.93068 0.82683 0.98743 0.91945 1.22284 0.95899 1.01838 0.97666 1.20880 1.00518 0.94451 0.93036 0.91127 1.21907 1.02791 1.01682 0.91392 1.21146 0.80303 0.83839 0.85025 1.90650 1.39619 1.28994 1.86543 1.46092 1.51521 1.34087 1.05604 1.21239 0.97655 0.96036 0.83359 1.22477 0.97238 0.99518 0.92750 0.90050 1.23688 0.96071 1.00751 0.98727 1.21387 0.95342 0.87578 0.92389 0.92353 1.42292 1.47669 1.06477 1.39314 1.19664 1.14468 0.94544 1.08715 0.90614 1.25537 1.02484 0.95778 1.02922 1.69803 1.45880 1.00360 1.45873 0.85164 0.78855 0.76645 0.79240 1.21550 1.22229 1.19469 1.23350 0.97121 1.01816 0.95218 1.22228 0.96156 0.97588 1.02935 1.22622 0.94075 0.96489 0.88396 1.87893 1.74947 1.24150 1.44237 0.92788 0.92003 0.93230 0.91082 0.92136 0.91506 0.91582 0.88783 0.91050 0.87739 0.86448 0.75338 0.92193 0.91679 0.93264 0.89175 0.79336 0.94007 0.87807 0.92456 0.91656 0.90878 0.93110 0.88633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.05 71.98 0.65 -1.21 16 2 C -0.09 -1.08 2.72 -10.79 -0.03 -1.11 16 3 C -0.15 -1.32 8.84 71.98 0.64 -0.69 16 4 C 0.09 1.26 1.95 30.63 0.06 1.32 16 5 H 0.06 0.83 6.72 -2.39 -0.02 0.82 16 6 C -0.14 -1.79 4.49 30.68 0.14 -1.66 16 7 C -0.07 -1.14 2.33 -10.68 -0.02 -1.17 16 8 H 0.07 1.35 7.95 -2.38 -0.02 1.33 16 9 C -0.14 -2.07 4.60 29.85 0.14 -1.93 16 10 C 0.51 11.17 7.53 87.65 0.66 11.83 16 11 O -0.58 -16.85 14.02 -3.03 -0.04 -16.89 16 12 N -0.72 -15.09 5.56 -463.05 -2.57 -17.67 16 13 C 0.14 3.37 5.50 86.38 0.48 3.84 16 14 C -0.10 -2.77 3.63 -10.27 -0.04 -2.80 16 15 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 16 C -0.15 -4.66 7.44 31.12 0.23 -4.43 16 17 C 0.14 5.35 4.56 45.52 0.21 5.56 16 18 H 0.06 2.20 8.10 -2.39 -0.02 2.18 16 19 N -0.72 -35.01 5.31 -320.44 -1.70 -36.71 16 20 C -0.24 -13.14 9.97 84.03 0.84 -12.31 16 21 H 0.08 3.96 7.83 -2.91 -0.02 3.94 16 22 C -0.07 -4.22 5.50 84.86 0.47 -3.75 16 23 N -0.97 -58.00 13.06 21.65 0.28 -57.71 16 24 Si 0.97 45.31 29.55 68.60 2.03 47.33 16 25 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 26 H -0.30 -13.88 7.11 99.48 0.71 -13.18 16 27 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 28 C -0.14 -4.06 7.39 31.12 0.23 -3.83 16 29 C -0.15 -2.84 5.41 30.69 0.17 -2.67 16 30 C 0.06 1.05 6.57 72.01 0.47 1.52 16 31 O -0.39 -7.29 9.74 -148.98 -1.45 -8.74 16 32 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.05 0.77 7.68 -2.39 -0.02 0.76 16 35 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 37 H 0.07 0.52 6.49 -2.39 -0.02 0.50 16 38 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.09 0.89 6.57 -2.39 -0.02 0.88 16 40 H 0.07 0.98 8.14 -2.39 -0.02 0.97 16 41 H 0.10 1.37 5.03 -2.39 -0.01 1.35 16 42 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.41 7.21 8.47 -92.71 -0.79 6.43 16 44 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 45 H 0.06 1.60 7.88 -2.39 -0.02 1.58 16 46 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 47 H 0.09 2.38 7.92 -2.39 -0.02 2.37 16 48 H 0.37 19.50 7.90 -92.71 -0.73 18.76 16 49 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 50 H 0.10 2.57 8.10 -2.38 -0.02 2.55 16 51 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 52 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 53 H 0.07 1.69 5.96 -2.39 -0.01 1.67 16 54 H 0.05 0.84 6.49 -2.39 -0.02 0.82 16 55 H 0.10 1.53 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -66.57 419.27 1.17 -65.40 By element: Atomic # 1 Polarization: 39.13 SS G_CDS: -0.65 Total: 38.49 kcal Atomic # 6 Polarization: -18.76 SS G_CDS: 5.28 Total: -13.49 kcal Atomic # 7 Polarization: -108.10 SS G_CDS: -3.99 Total: -112.09 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: -1.49 Total: -25.64 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.33 kcal Total: -66.57 1.17 -65.40 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488871505.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.539 kcal (2) G-P(sol) polarization free energy of solvation -66.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds