Wall clock time and date at job start Wed Apr 1 2020 00:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46852 * 2 1 4 4 H 1.08993 * 109.47157 * 54.73574 * 3 2 1 5 5 O 1.42889 * 109.47181 * 294.72997 * 3 2 1 6 6 C 1.42903 * 114.00163 * 151.03747 * 5 3 2 7 7 C 1.54266 * 110.03182 * 270.03463 * 6 5 3 8 8 C 1.54897 * 104.19500 * 217.10251 * 7 6 5 9 9 C 1.54891 * 102.74705 * 37.93821 * 8 7 6 10 10 C 1.53873 * 110.03536 * 152.86221 * 6 5 3 11 11 C 1.50706 * 109.46729 * 174.73180 * 3 2 1 12 12 O 1.21274 * 119.99643 * 115.00137 * 11 3 2 13 13 N 1.34774 * 119.99918 * 295.00193 * 11 3 2 14 14 C 1.46505 * 119.99787 * 180.02562 * 13 11 3 15 15 C 1.52997 * 109.47002 * 154.99828 * 14 13 11 16 16 C 1.53006 * 109.46998 * 179.97438 * 15 14 13 17 17 C 1.53008 * 109.46904 * 300.00029 * 16 15 14 18 18 N 1.46494 * 109.47105 * 299.99903 * 17 16 15 19 19 C 1.36937 * 120.00252 * 205.00175 * 18 17 16 20 20 H 1.07996 * 119.99558 * 359.97438 * 19 18 17 21 21 C 1.38808 * 120.00292 * 179.97438 * 19 18 17 22 22 N 1.31621 * 120.00243 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00106 * 179.97438 * 21 19 18 24 24 H 1.48492 * 109.47137 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47103 * 120.00178 * 23 21 19 26 26 H 1.48500 * 109.46938 * 240.00208 * 23 21 19 27 27 C 1.53001 * 109.46924 * 59.99814 * 17 16 15 28 28 C 1.52998 * 109.47270 * 299.99862 * 27 17 16 29 29 H 1.08998 * 109.46863 * 185.28537 * 1 2 3 30 30 H 1.09008 * 109.46941 * 305.28187 * 1 2 3 31 31 H 1.08998 * 109.47531 * 65.28276 * 1 2 3 32 32 H 1.09002 * 109.47135 * 239.99999 * 2 1 3 33 33 H 1.08992 * 109.47217 * 119.99944 * 2 1 3 34 34 H 1.08999 * 110.01332 * 31.46835 * 6 5 3 35 35 H 1.08996 * 110.48780 * 335.77673 * 7 6 5 36 36 H 1.08997 * 110.49008 * 98.42078 * 7 6 5 37 37 H 1.08997 * 110.75452 * 279.62847 * 8 7 6 38 38 H 1.08998 * 110.91335 * 156.32642 * 8 7 6 39 39 H 1.09000 * 110.48500 * 203.38308 * 9 8 7 40 40 H 1.09000 * 110.59952 * 80.79443 * 9 8 7 41 41 H 1.08999 * 110.03281 * 238.56991 * 10 6 5 42 42 H 1.09001 * 110.03093 * 359.95438 * 10 6 5 43 43 H 0.97003 * 120.00301 * 359.97438 * 13 11 3 44 44 H 1.08995 * 109.46926 * 34.99397 * 14 13 11 45 45 H 1.08996 * 109.47169 * 59.99739 * 15 14 13 46 46 H 1.08998 * 109.47552 * 299.99618 * 15 14 13 47 47 H 1.08995 * 109.46850 * 59.99619 * 16 15 14 48 48 H 1.08996 * 109.47081 * 180.02562 * 16 15 14 49 49 H 1.08998 * 109.46649 * 179.97438 * 17 16 15 50 50 H 0.97007 * 120.00135 * 25.00227 * 18 17 16 51 51 H 0.96994 * 120.00364 * 180.02562 * 22 21 19 52 52 H 1.08996 * 109.47078 * 60.00237 * 27 17 16 53 53 H 1.09007 * 109.46805 * 179.97438 * 27 17 16 54 54 H 1.09001 * 109.46498 * 180.02562 * 28 27 17 55 55 H 1.08996 * 109.47376 * 300.00192 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6017 1.9828 0.8390 5 8 1.6673 2.0795 -1.2236 6 6 1.4835 3.4922 -1.1111 7 6 0.0170 3.8071 -0.7506 8 6 -0.3002 5.0989 -1.5444 9 6 0.4495 4.8718 -2.8806 10 6 1.7585 4.1691 -2.4653 11 6 3.5413 1.4445 0.1305 12 8 4.2284 1.8599 -0.7785 13 7 4.1204 0.9847 1.2572 14 6 5.5800 0.9872 1.3843 15 6 5.9629 1.0318 2.8649 16 6 7.4872 1.0337 2.9975 17 6 8.0561 -0.2364 2.3616 18 7 7.5080 -1.4115 3.0435 19 6 8.2004 -2.5929 3.0352 20 1 9.1503 -2.6584 2.5256 21 6 7.6814 -3.7061 3.6817 22 7 6.5234 -3.6265 4.3023 23 14 8.6256 -5.3179 3.6697 24 1 9.8892 -5.1457 2.9089 25 1 8.9391 -5.7183 5.0649 26 1 7.7994 -6.3708 3.0263 27 6 7.6730 -0.2810 0.8810 28 6 6.1488 -0.2829 0.7484 29 1 -0.3633 -1.0233 0.0947 30 1 -0.3633 0.5936 0.8390 31 1 -0.3634 0.4297 -0.9335 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.1508 3.8957 -0.3496 35 1 -0.6367 2.9946 -1.0675 36 1 -0.0833 3.9831 0.3203 37 1 0.0895 5.9756 -1.0270 38 1 -1.3723 5.1975 -1.7148 39 1 0.6649 5.8248 -3.3639 40 1 -0.1332 4.2321 -3.5433 41 1 2.5587 4.9018 -2.3608 42 1 2.0330 3.4201 -3.2082 43 1 3.5709 0.6528 1.9844 44 1 5.9873 1.8617 0.8770 45 1 5.5555 0.1573 3.3721 46 1 5.5574 1.9364 3.3180 47 1 7.8949 1.9080 2.4902 48 1 7.7601 1.0651 4.0523 49 1 9.1420 -0.2348 2.4558 50 1 6.6546 -1.3527 3.5009 51 1 6.1609 -4.4043 4.7544 52 1 8.0808 0.5933 0.3737 53 1 8.0786 -1.1857 0.4279 54 1 5.8760 -0.3152 -0.3064 55 1 5.7410 -1.1572 1.2557 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566988513.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:30 Heat of formation + Delta-G solvation = -123.754783 kcal Electronic energy + Delta-G solvation = -30942.097186 eV Core-core repulsion = 26976.913090 eV Total energy + Delta-G solvation = -3965.184096 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.42772 -40.08260 -39.11487 -37.11577 -36.12588 -34.76761 -34.02918 -32.07915 -31.65347 -29.69884 -29.63465 -28.76932 -27.44607 -25.58705 -23.65996 -23.39917 -22.67974 -21.71373 -21.31333 -21.23284 -20.10448 -19.23441 -18.42557 -18.26758 -17.10582 -16.83922 -16.57945 -16.19682 -15.90779 -15.77292 -15.43643 -15.32299 -15.11345 -14.96298 -14.75624 -14.43927 -14.25859 -13.74500 -13.56501 -13.44797 -13.28483 -13.24189 -13.05367 -12.91086 -12.86635 -12.72121 -12.62810 -12.21119 -12.06167 -12.04179 -12.01800 -11.95649 -11.89763 -11.84102 -11.67847 -11.51844 -11.46301 -11.26931 -11.23204 -11.15649 -10.83476 -10.18979 -10.01251 -8.92320 -7.90628 -5.15484 1.46719 1.48007 1.54778 1.56612 2.07419 2.58369 2.67929 3.42621 3.58957 3.63939 3.69912 3.80812 3.88278 3.90775 3.95507 4.01358 4.07539 4.15553 4.25304 4.37403 4.38711 4.43130 4.51339 4.52673 4.58792 4.63733 4.66440 4.68044 4.70334 4.79815 4.82381 4.85477 4.93742 4.99747 5.03736 5.07840 5.10507 5.12368 5.19836 5.23076 5.24459 5.28432 5.30795 5.31457 5.40578 5.45948 5.48296 5.55818 5.61935 5.62067 6.16515 6.33568 6.58323 7.23360 7.40429 8.18387 8.42875 9.32906 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018735 B = 0.002403 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.179292 B =11647.342738 C =12408.732809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.116 4.116 3 C 0.082 3.918 4 H 0.112 0.888 5 O -0.364 6.364 6 C 0.078 3.922 7 C -0.143 4.143 8 C -0.119 4.119 9 C -0.120 4.120 10 C -0.124 4.124 11 C 0.484 3.516 12 O -0.572 6.572 13 N -0.712 5.712 14 C 0.159 3.841 15 C -0.113 4.113 16 C -0.111 4.111 17 C 0.165 3.835 18 N -0.726 5.726 19 C -0.231 4.231 20 H 0.069 0.931 21 C -0.074 4.074 22 N -0.965 5.965 23 Si 0.962 3.038 24 H -0.271 1.271 25 H -0.294 1.294 26 H -0.298 1.298 27 C -0.124 4.124 28 C -0.107 4.107 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.090 0.910 34 H 0.053 0.947 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.057 0.943 43 H 0.411 0.589 44 H 0.076 0.924 45 H 0.058 0.942 46 H 0.088 0.912 47 H 0.085 0.915 48 H 0.067 0.933 49 H 0.043 0.957 50 H 0.376 0.624 51 H 0.249 0.751 52 H 0.067 0.933 53 H 0.037 0.963 54 H 0.035 0.965 55 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.887 18.589 -7.695 25.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.154 4.154 3 C 0.020 3.980 4 H 0.130 0.870 5 O -0.282 6.282 6 C 0.021 3.979 7 C -0.180 4.180 8 C -0.157 4.157 9 C -0.157 4.157 10 C -0.162 4.162 11 C 0.271 3.729 12 O -0.451 6.451 13 N -0.364 5.364 14 C 0.054 3.946 15 C -0.151 4.151 16 C -0.150 4.150 17 C 0.056 3.944 18 N -0.368 5.368 19 C -0.363 4.363 20 H 0.087 0.913 21 C -0.266 4.266 22 N -0.617 5.617 23 Si 0.793 3.207 24 H -0.196 1.196 25 H -0.222 1.222 26 H -0.225 1.225 27 C -0.165 4.165 28 C -0.146 4.146 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.109 0.891 34 H 0.071 0.929 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.096 0.904 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.076 0.924 43 H 0.248 0.752 44 H 0.094 0.906 45 H 0.077 0.923 46 H 0.106 0.894 47 H 0.104 0.896 48 H 0.086 0.914 49 H 0.061 0.939 50 H 0.210 0.790 51 H 0.058 0.942 52 H 0.086 0.914 53 H 0.056 0.944 54 H 0.054 0.946 55 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -15.275 18.689 -8.566 25.611 hybrid contribution 0.448 -1.554 0.534 1.703 sum -14.827 17.135 -8.031 24.040 Atomic orbital electron populations 1.21675 0.92726 1.02692 1.02689 1.21610 0.98674 0.91930 1.03222 1.22206 0.88585 0.97250 0.89910 0.87034 1.88048 1.87812 1.21091 1.31218 1.23009 0.96629 0.80281 0.97981 1.22913 0.95031 0.99035 1.01056 1.22439 1.01037 0.96978 0.95206 1.22338 0.94939 1.00478 0.97948 1.22189 0.98986 0.98975 0.96012 1.22027 0.92493 0.76613 0.81797 1.90670 1.66022 1.48187 1.40213 1.46123 1.07768 1.63972 1.18557 1.20825 0.79477 0.97470 0.96791 1.21647 0.96924 1.02675 0.93827 1.21662 0.94766 0.97244 1.01290 1.20475 0.96198 0.87171 0.90521 1.42594 1.23951 1.07030 1.63199 1.19616 1.01538 0.89273 1.25866 0.91294 1.25372 0.98467 1.00946 1.01822 1.69777 1.20406 1.29964 1.41549 0.85228 0.78063 0.80649 0.76797 1.19591 1.22167 1.22517 1.21996 0.95091 1.00288 0.99104 1.21582 0.96452 0.97927 0.98620 0.91623 0.91029 0.92510 0.92592 0.89119 0.92870 0.90408 0.90262 0.90752 0.89908 0.90430 0.91444 0.91357 0.92368 0.75239 0.90570 0.92312 0.89383 0.89621 0.91445 0.93872 0.78968 0.94238 0.91423 0.94390 0.94591 0.93302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.76 71.98 0.70 -1.41 16 2 C -0.12 -2.29 5.61 30.60 0.17 -2.12 16 3 C 0.08 1.76 2.34 29.85 0.07 1.83 16 4 H 0.11 1.72 7.83 -2.39 -0.02 1.71 16 5 O -0.36 -8.92 8.73 -129.99 -1.13 -10.06 16 6 C 0.08 1.57 3.14 31.32 0.10 1.67 16 7 C -0.14 -1.98 6.54 31.67 0.21 -1.77 16 8 C -0.12 -1.37 6.91 31.89 0.22 -1.15 16 9 C -0.12 -1.67 6.83 31.67 0.22 -1.45 16 10 C -0.12 -2.45 6.61 31.32 0.21 -2.25 16 11 C 0.48 13.71 7.05 87.66 0.62 14.33 16 12 O -0.57 -21.25 16.17 15.98 0.26 -21.00 16 13 N -0.71 -18.25 4.97 -442.54 -2.20 -20.45 16 14 C 0.16 4.71 2.46 44.99 0.11 4.82 16 15 C -0.11 -3.11 5.22 30.60 0.16 -2.95 16 16 C -0.11 -3.29 5.61 30.60 0.17 -3.12 16 17 C 0.16 6.27 3.10 45.00 0.14 6.41 16 18 N -0.73 -34.77 4.28 -322.95 -1.38 -36.15 16 19 C -0.23 -12.56 9.93 84.03 0.83 -11.72 16 20 H 0.07 3.69 7.83 -2.91 -0.02 3.67 16 21 C -0.07 -4.17 5.50 84.86 0.47 -3.71 16 22 N -0.97 -57.39 13.06 21.65 0.28 -57.10 16 23 Si 0.96 46.17 29.55 68.60 2.03 48.20 16 24 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 25 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 26 H -0.30 -14.40 7.11 99.48 0.71 -13.70 16 27 C -0.12 -4.54 5.61 30.59 0.17 -4.37 16 28 C -0.11 -3.88 5.34 30.59 0.16 -3.71 16 29 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 31 H 0.06 0.92 7.97 -2.39 -0.02 0.90 16 32 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.09 1.63 7.76 -2.39 -0.02 1.61 16 34 H 0.05 1.12 7.83 -2.39 -0.02 1.10 16 35 H 0.08 1.12 8.08 -2.39 -0.02 1.10 16 36 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.06 1.39 7.95 -2.39 -0.02 1.37 16 43 H 0.41 8.45 8.31 -92.71 -0.77 7.68 16 44 H 0.08 2.37 7.58 -2.39 -0.02 2.35 16 45 H 0.06 1.88 6.50 -2.39 -0.02 1.87 16 46 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 47 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 48 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 49 H 0.04 1.69 8.08 -2.39 -0.02 1.67 16 50 H 0.38 18.94 6.06 -92.70 -0.56 18.37 16 51 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 52 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 53 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 54 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 55 H 0.05 2.05 7.60 -2.39 -0.02 2.03 16 Total: -1.00 -69.53 425.45 2.10 -67.43 By element: Atomic # 1 Polarization: 40.30 SS G_CDS: -0.48 Total: 39.82 kcal Atomic # 6 Polarization: -15.41 SS G_CDS: 4.73 Total: -10.69 kcal Atomic # 7 Polarization: -110.41 SS G_CDS: -3.30 Total: -113.71 kcal Atomic # 8 Polarization: -30.18 SS G_CDS: -0.88 Total: -31.06 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Total: -69.53 2.10 -67.43 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566988513.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.321 kcal (2) G-P(sol) polarization free energy of solvation -69.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds