Wall clock time and date at job start Tue Mar 31 2020 22:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53009 * 109.46858 * 2 1 4 4 H 1.09003 * 109.46474 * 177.57136 * 3 2 1 5 5 C 1.52998 * 109.46933 * 57.57154 * 3 2 1 6 6 C 1.53004 * 109.47015 * 65.00305 * 5 3 2 7 7 C 1.54884 * 110.60250 * 68.31517 * 6 5 3 8 8 C 1.54891 * 102.75190 * 156.67539 * 7 6 5 9 9 C 1.54275 * 104.19197 * 322.05909 * 8 7 6 10 10 C 1.53873 * 106.59904 * 23.60835 * 9 8 7 11 11 C 1.50698 * 109.47067 * 297.57173 * 3 2 1 12 12 O 1.21275 * 119.99997 * 94.66364 * 11 3 2 13 13 N 1.34776 * 119.99744 * 274.66265 * 11 3 2 14 14 C 1.46502 * 119.99568 * 175.28982 * 13 11 3 15 15 C 1.53003 * 109.47064 * 179.97438 * 14 13 11 16 16 O 1.42896 * 110.88887 * 297.57894 * 15 14 13 17 17 C 1.55159 * 111.00644 * 173.64625 * 15 14 13 18 18 C 1.54322 * 102.94424 * 206.42753 * 17 15 14 19 19 N 1.47025 * 107.26987 * 22.19220 * 18 17 15 20 20 C 1.36938 * 125.64677 * 181.09380 * 19 18 17 21 21 H 1.07999 * 120.00289 * 179.97438 * 20 19 18 22 22 C 1.38817 * 119.99885 * 359.96126 * 20 19 18 23 23 N 1.31613 * 120.00240 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99688 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47211 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46942 * 120.00268 * 24 22 20 27 27 H 1.48505 * 109.47121 * 239.99982 * 24 22 20 28 28 C 1.47419 * 108.70436 * 1.06288 * 19 18 17 29 29 H 1.09005 * 109.46619 * 170.72301 * 1 2 3 30 30 H 1.08997 * 109.47655 * 290.72798 * 1 2 3 31 31 H 1.09003 * 109.47098 * 50.73027 * 1 2 3 32 32 H 1.09000 * 109.47535 * 239.99789 * 2 1 3 33 33 H 1.09000 * 109.46988 * 119.99449 * 2 1 3 34 34 H 1.08994 * 109.47483 * 304.99821 * 5 3 2 35 35 H 1.09004 * 109.46738 * 184.99252 * 5 3 2 36 36 H 1.09000 * 110.43550 * 305.69550 * 6 5 3 37 37 H 1.09007 * 110.75993 * 274.99150 * 7 6 5 38 38 H 1.09003 * 110.75728 * 38.35846 * 7 6 5 39 39 H 1.08992 * 110.49009 * 203.38106 * 8 7 6 40 40 H 1.09000 * 110.59846 * 80.79011 * 8 7 6 41 41 H 1.09002 * 110.02777 * 264.32040 * 9 8 7 42 42 H 1.09001 * 110.02762 * 142.88924 * 9 8 7 43 43 H 1.09001 * 110.02900 * 240.71506 * 10 9 8 44 44 H 1.09005 * 110.02915 * 119.28115 * 10 9 8 45 45 H 0.96997 * 120.00209 * 355.28547 * 13 11 3 46 46 H 1.09002 * 109.47270 * 299.99644 * 14 13 11 47 47 H 1.09001 * 109.47235 * 60.00113 * 14 13 11 48 48 H 0.96698 * 114.00461 * 59.28923 * 16 15 14 49 49 H 1.09004 * 110.71802 * 324.79258 * 17 15 14 50 50 H 1.08996 * 110.71438 * 88.06448 * 17 15 14 51 51 H 1.09005 * 109.88291 * 262.77676 * 18 17 15 52 52 H 1.08998 * 109.88571 * 141.61380 * 18 17 15 53 53 H 0.96998 * 120.00281 * 180.02562 * 23 22 20 54 54 H 1.09003 * 110.36562 * 217.03063 * 28 19 18 55 55 H 1.09000 * 110.36957 * 94.71175 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1291 1.4428 0.0436 5 6 1.4806 2.1812 1.2176 6 6 2.0403 1.5541 2.4960 7 6 3.5592 1.8312 2.6192 8 6 3.8088 1.6966 4.1420 9 6 2.5545 2.3210 4.7876 10 6 1.4301 2.2303 3.7410 11 6 1.5873 2.1354 -1.2594 12 8 0.5696 2.7949 -1.2565 13 7 2.3136 2.0220 -2.3891 14 6 1.8216 2.6085 -3.6381 15 6 2.8278 2.3397 -4.7589 16 8 4.0829 2.9619 -4.4769 17 6 2.2708 2.8056 -6.1301 18 6 3.0121 1.8953 -7.1318 19 7 3.4546 0.7034 -6.3935 20 6 4.1687 -0.3408 -6.9180 21 1 4.4473 -1.1740 -6.2899 22 6 4.5344 -0.3283 -8.2571 23 7 4.1951 0.6872 -9.0225 24 14 5.5091 -1.7523 -8.9723 25 1 5.7628 -2.7606 -7.9120 26 1 4.7351 -2.3778 -10.0745 27 1 6.8038 -1.2508 -9.4992 28 6 3.0028 0.8187 -4.9950 29 1 -0.3633 -1.0143 -0.1657 30 1 -0.3634 0.3637 0.9611 31 1 -0.3633 0.6505 -0.7956 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 0.3934 2.1046 1.2211 35 1 1.7709 3.2308 1.1707 36 1 1.8459 0.4816 2.5105 37 1 4.1337 1.0879 2.0664 38 1 3.7972 2.8381 2.2763 39 1 4.7024 2.2490 4.4324 40 1 3.9012 0.6478 4.4242 41 1 2.7451 3.3637 5.0415 42 1 2.2779 1.7628 5.6820 43 1 1.0750 3.2291 3.4871 44 1 0.6078 1.6282 4.1277 45 1 3.1621 1.5521 -2.3751 46 1 0.8617 2.1612 -3.8963 47 1 1.6988 3.6841 -3.5109 48 1 4.4932 2.6645 -3.6533 49 1 1.1944 2.6426 -6.1845 50 1 2.5128 3.8532 -6.3088 51 1 3.8758 2.4200 -7.5405 52 1 2.3379 1.6036 -7.9369 53 1 4.4503 0.6957 -9.9583 54 1 3.7557 0.4140 -4.3185 55 1 2.0528 0.3019 -4.8593 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569759961.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:28 Heat of formation + Delta-G solvation = -115.420864 kcal Electronic energy + Delta-G solvation = -30755.028975 eV Core-core repulsion = 26790.206265 eV Total energy + Delta-G solvation = -3964.822710 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 2.75 seconds Orbital eigenvalues (eV) -41.37884 -40.15646 -39.10453 -36.79467 -36.08327 -35.27079 -34.00202 -31.56899 -31.44272 -30.03590 -29.51848 -28.47100 -27.30029 -25.50983 -24.87662 -23.13729 -22.13434 -21.43046 -21.36353 -20.83128 -20.04102 -18.88011 -18.33584 -17.51957 -17.05919 -16.79177 -16.71595 -16.43084 -15.92916 -15.78374 -15.62112 -15.52475 -15.19288 -14.71245 -14.50037 -14.17029 -14.15358 -13.89242 -13.82459 -13.75776 -13.46011 -13.24463 -12.91436 -12.82514 -12.79690 -12.45741 -12.35171 -12.09675 -12.09023 -11.97730 -11.97107 -11.87222 -11.80323 -11.76063 -11.68031 -11.54376 -11.32292 -11.23860 -11.09422 -10.93972 -10.69682 -10.57104 -10.11337 -8.89021 -7.84689 -5.20248 1.46205 1.47453 1.57535 1.67657 2.15721 2.49155 3.17678 3.34438 3.47183 3.60291 3.65103 3.70668 3.83198 3.93162 3.94148 3.97885 4.03697 4.08049 4.35756 4.44132 4.47972 4.55733 4.59028 4.62635 4.65008 4.68277 4.72801 4.79876 4.81754 4.86927 4.89325 4.92457 4.94801 4.96587 5.05132 5.08145 5.11410 5.16300 5.21901 5.24380 5.27830 5.34019 5.38952 5.44522 5.46028 5.48574 5.56926 5.63152 5.65983 5.75750 6.18782 6.52304 6.82351 7.09210 7.26171 7.76723 8.40903 9.26312 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.017469 B = 0.002274 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.426530 B =12312.612591 C =12809.417410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.110 4.110 3 C -0.099 4.099 4 H 0.114 0.886 5 C -0.088 4.088 6 C -0.087 4.087 7 C -0.123 4.123 8 C -0.125 4.125 9 C -0.126 4.126 10 C -0.124 4.124 11 C 0.518 3.482 12 O -0.578 6.578 13 N -0.720 5.720 14 C 0.120 3.880 15 C 0.123 3.877 16 O -0.553 6.553 17 C -0.122 4.122 18 C 0.190 3.810 19 N -0.621 5.621 20 C -0.238 4.238 21 H 0.087 0.913 22 C -0.071 4.071 23 N -0.953 5.953 24 Si 0.980 3.020 25 H -0.261 1.261 26 H -0.294 1.294 27 H -0.294 1.294 28 C 0.115 3.885 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.034 0.966 32 H 0.068 0.932 33 H 0.098 0.902 34 H 0.062 0.938 35 H 0.052 0.948 36 H 0.087 0.913 37 H 0.076 0.924 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.059 0.941 42 H 0.066 0.934 43 H 0.055 0.945 44 H 0.065 0.935 45 H 0.410 0.590 46 H 0.072 0.928 47 H 0.072 0.928 48 H 0.383 0.617 49 H 0.093 0.907 50 H 0.080 0.920 51 H 0.007 0.993 52 H 0.008 0.992 53 H 0.246 0.754 54 H 0.056 0.944 55 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.414 0.977 27.973 28.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.147 4.147 3 C -0.120 4.120 4 H 0.132 0.868 5 C -0.126 4.126 6 C -0.105 4.105 7 C -0.160 4.160 8 C -0.163 4.163 9 C -0.164 4.164 10 C -0.161 4.161 11 C 0.306 3.694 12 O -0.457 6.457 13 N -0.372 5.372 14 C -0.005 4.005 15 C 0.081 3.919 16 O -0.360 6.360 17 C -0.161 4.161 18 C 0.065 3.935 19 N -0.347 5.347 20 C -0.367 4.367 21 H 0.105 0.895 22 C -0.263 4.263 23 N -0.602 5.602 24 Si 0.808 3.192 25 H -0.186 1.186 26 H -0.221 1.221 27 H -0.221 1.221 28 C -0.011 4.011 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.053 0.947 32 H 0.087 0.913 33 H 0.117 0.883 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.074 0.926 44 H 0.083 0.917 45 H 0.247 0.753 46 H 0.090 0.910 47 H 0.090 0.910 48 H 0.232 0.768 49 H 0.111 0.889 50 H 0.099 0.901 51 H 0.026 0.974 52 H 0.027 0.973 53 H 0.055 0.945 54 H 0.075 0.925 55 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -4.189 1.668 27.224 27.594 hybrid contribution 0.812 -0.821 -0.734 1.368 sum -3.376 0.847 26.490 26.718 Atomic orbital electron populations 1.21862 0.96313 1.01462 1.01854 1.21507 0.95915 0.93315 1.04002 1.21419 1.03108 0.96441 0.91029 0.86788 1.21423 1.00664 0.98307 0.92235 1.22024 0.95234 1.00376 0.92851 1.22622 0.95315 1.01727 0.96359 1.22360 0.97567 1.01103 0.95265 1.22145 0.95111 1.00856 0.98256 1.22210 0.98203 1.00527 0.95200 1.21240 0.83006 0.79739 0.85433 1.90672 1.26949 1.42290 1.85837 1.45959 1.25102 1.57778 1.08403 1.21672 0.96878 0.99135 0.82822 1.22383 0.83750 0.92206 0.93596 1.86610 1.35302 1.67475 1.46593 1.22797 1.00134 1.00324 0.92831 1.20821 0.94767 0.86132 0.91783 1.44648 1.63691 1.20345 1.06028 1.19510 1.26107 0.97584 0.93531 0.89509 1.25702 1.02751 1.00833 0.97051 1.70204 1.52029 1.32244 1.05757 0.84990 0.77427 0.78602 0.78185 1.18552 1.22125 1.22149 1.22334 0.97764 0.94411 0.86587 0.92122 0.91882 0.94705 0.91317 0.88323 0.91948 0.92960 0.89519 0.90501 0.91981 0.91646 0.91182 0.92232 0.91556 0.92599 0.91662 0.75339 0.90973 0.90984 0.76819 0.88889 0.90089 0.97438 0.97342 0.94514 0.92536 0.94925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.75 9.12 71.98 0.66 -2.09 16 2 C -0.11 -1.51 5.41 30.60 0.17 -1.35 16 3 C -0.10 -1.51 2.43 -11.54 -0.03 -1.53 16 4 H 0.11 1.23 7.26 -2.39 -0.02 1.21 16 5 C -0.09 -1.40 3.22 30.60 0.10 -1.31 16 6 C -0.09 -1.01 2.71 -9.72 -0.03 -1.04 16 7 C -0.12 -1.30 5.57 31.88 0.18 -1.12 16 8 C -0.13 -1.26 6.83 31.67 0.22 -1.04 16 9 C -0.13 -1.36 6.80 31.32 0.21 -1.15 16 10 C -0.12 -1.51 6.37 31.32 0.20 -1.31 16 11 C 0.52 11.76 6.05 87.66 0.53 12.29 16 12 O -0.58 -17.84 15.33 -3.01 -0.05 -17.89 16 13 N -0.72 -15.23 5.16 -463.06 -2.39 -17.62 16 14 C 0.12 3.17 4.90 86.38 0.42 3.59 16 15 C 0.12 3.93 0.95 -9.40 -0.01 3.92 16 16 O -0.55 -17.84 13.19 -148.98 -1.96 -19.81 16 17 C -0.12 -4.56 6.16 31.78 0.20 -4.36 16 18 C 0.19 9.61 5.37 86.73 0.47 10.07 16 19 N -0.62 -31.43 3.39 -691.97 -2.35 -33.77 16 20 C -0.24 -13.19 10.28 84.03 0.86 -12.33 16 21 H 0.09 4.50 7.83 -2.91 -0.02 4.48 16 22 C -0.07 -4.04 5.49 84.86 0.47 -3.58 16 23 N -0.95 -58.29 10.31 21.65 0.22 -58.07 16 24 Si 0.98 45.70 29.55 68.60 2.03 47.73 16 25 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 26 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 27 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 28 C 0.11 4.27 5.93 86.86 0.51 4.79 16 29 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 30 H 0.06 1.01 6.82 -2.39 -0.02 1.00 16 31 H 0.03 0.81 6.39 -2.39 -0.02 0.79 16 32 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.10 0.95 6.58 -2.39 -0.02 0.94 16 34 H 0.06 1.20 6.21 -2.39 -0.01 1.18 16 35 H 0.05 0.96 8.06 -2.38 -0.02 0.95 16 36 H 0.09 0.89 6.44 -2.39 -0.02 0.88 16 37 H 0.08 0.67 7.92 -2.38 -0.02 0.65 16 38 H 0.06 0.75 8.00 -2.39 -0.02 0.73 16 39 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.06 0.78 7.84 -2.39 -0.02 0.76 16 44 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 45 H 0.41 6.73 7.30 -92.71 -0.68 6.06 16 46 H 0.07 2.01 8.11 -2.39 -0.02 1.99 16 47 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 48 H 0.38 8.74 8.16 -74.06 -0.60 8.14 16 49 H 0.09 3.07 8.01 -2.38 -0.02 3.05 16 50 H 0.08 2.87 8.14 -2.39 -0.02 2.86 16 51 H 0.01 0.43 7.38 -2.38 -0.02 0.41 16 52 H 0.01 0.47 7.51 -2.39 -0.02 0.46 16 53 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 54 H 0.06 1.90 7.97 -2.39 -0.02 1.88 16 55 H 0.03 1.21 8.04 -2.39 -0.02 1.19 16 Total: -1.00 -73.40 415.27 0.21 -73.19 By element: Atomic # 1 Polarization: 24.18 SS G_CDS: -0.41 Total: 23.77 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: 5.12 Total: 2.47 kcal Atomic # 7 Polarization: -104.94 SS G_CDS: -4.52 Total: -109.46 kcal Atomic # 8 Polarization: -35.69 SS G_CDS: -2.01 Total: -37.70 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -73.40 0.21 -73.19 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569759961.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.231 kcal (2) G-P(sol) polarization free energy of solvation -73.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.75 seconds