Wall clock time and date at job start Tue Mar 31 2020 22:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47242 * 2 1 4 4 H 1.09008 * 109.47002 * 178.62967 * 3 2 1 5 5 C 1.53003 * 109.46787 * 58.63429 * 3 2 1 6 6 C 1.52999 * 109.47182 * 69.45728 * 5 3 2 7 7 C 1.54262 * 110.03178 * 288.58703 * 6 5 3 8 8 C 1.54895 * 104.19583 * 217.10913 * 7 6 5 9 9 C 1.54890 * 102.74961 * 37.94111 * 8 7 6 10 10 C 1.53882 * 110.02948 * 171.42060 * 6 5 3 11 11 C 1.50693 * 109.47036 * 298.63138 * 3 2 1 12 12 O 1.21277 * 119.99682 * 98.05225 * 11 3 2 13 13 N 1.34776 * 120.00152 * 278.05400 * 11 3 2 14 14 C 1.46501 * 120.00093 * 175.71652 * 13 11 3 15 15 C 1.53002 * 109.47005 * 179.97438 * 14 13 11 16 16 O 1.42903 * 110.64043 * 61.86220 * 15 14 13 17 17 C 1.55152 * 110.71833 * 185.00038 * 15 14 13 18 18 C 1.54913 * 101.58221 * 153.86929 * 17 15 14 19 19 N 1.47425 * 104.82844 * 322.98996 * 18 17 15 20 20 C 1.36940 * 125.64475 * 204.09078 * 19 18 17 21 21 H 1.07996 * 120.00291 * 9.40118 * 20 19 18 22 22 C 1.38813 * 119.99567 * 189.39806 * 20 19 18 23 23 N 1.31617 * 120.00243 * 11.96900 * 22 20 19 24 24 Si 1.86804 * 119.99884 * 191.96428 * 22 20 19 25 25 H 1.48506 * 109.46720 * 84.97878 * 24 22 20 26 26 H 1.48501 * 109.47310 * 204.97452 * 24 22 20 27 27 H 1.48493 * 109.47075 * 324.97985 * 24 22 20 28 28 C 1.47020 * 108.70359 * 24.35686 * 19 18 17 29 29 H 1.09006 * 109.46934 * 297.28063 * 1 2 3 30 30 H 1.09003 * 109.47230 * 57.27795 * 1 2 3 31 31 H 1.09004 * 109.47365 * 177.28023 * 1 2 3 32 32 H 1.08999 * 109.47214 * 239.99932 * 2 1 3 33 33 H 1.09004 * 109.46998 * 119.99843 * 2 1 3 34 34 H 1.08999 * 109.46666 * 189.45935 * 5 3 2 35 35 H 1.09003 * 109.46890 * 309.45396 * 5 3 2 36 36 H 1.08992 * 110.01797 * 50.03453 * 6 5 3 37 37 H 1.09000 * 110.48504 * 335.78287 * 7 6 5 38 38 H 1.08994 * 110.48785 * 98.43288 * 7 6 5 39 39 H 1.09004 * 110.75459 * 279.62855 * 8 7 6 40 40 H 1.08997 * 110.75747 * 156.25861 * 8 7 6 41 41 H 1.08996 * 110.48944 * 203.38423 * 9 8 7 42 42 H 1.09000 * 110.59767 * 80.79201 * 9 8 7 43 43 H 1.08996 * 110.03173 * 238.56894 * 10 6 5 44 44 H 1.09004 * 110.03160 * 359.94955 * 10 6 5 45 45 H 0.97006 * 120.00167 * 355.71907 * 13 11 3 46 46 H 1.09001 * 109.46774 * 60.00286 * 14 13 11 47 47 H 1.08992 * 109.47340 * 300.00113 * 14 13 11 48 48 H 0.96699 * 113.99796 * 303.14532 * 16 15 14 49 49 H 1.09001 * 111.00820 * 35.79666 * 17 15 14 50 50 H 1.09003 * 111.04166 * 271.95721 * 17 15 14 51 51 H 1.09000 * 110.36408 * 204.15706 * 18 17 15 52 52 H 1.08992 * 110.36506 * 81.82786 * 18 17 15 53 53 H 0.96996 * 120.00324 * 179.97438 * 23 22 20 54 54 H 1.09002 * 109.88113 * 118.12865 * 28 19 18 55 55 H 1.09004 * 109.88318 * 239.29461 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1298 1.4426 0.0246 5 6 1.5021 2.1736 1.2317 6 6 2.1683 1.6121 2.4894 7 6 1.6390 0.1923 2.7788 8 6 1.5503 0.1275 4.3238 9 6 1.0630 1.5493 4.6982 10 6 1.8021 2.4750 3.7098 11 6 1.5656 2.1430 -1.2470 12 8 0.5825 2.8521 -1.2074 13 7 2.2337 1.9815 -2.4063 14 6 1.7202 2.5859 -3.6381 15 6 2.6595 2.2536 -4.7992 16 8 2.7201 0.8415 -5.0099 17 6 2.2118 2.9828 -6.0934 18 6 3.5493 3.0929 -6.8671 19 7 4.5654 3.3472 -5.8296 20 6 5.7735 3.9603 -6.0291 21 1 5.9872 4.4381 -6.9738 22 6 6.7235 3.9677 -5.0170 23 7 6.5680 3.1954 -3.9627 24 14 8.2229 5.0737 -5.1515 25 1 7.8843 6.4298 -4.6497 26 1 9.3300 4.5077 -4.3396 27 1 8.6463 5.1630 -6.5720 28 6 4.0696 2.8277 -4.5467 29 1 -0.3633 0.4711 0.9134 30 1 -0.3634 0.5555 -0.8646 31 1 -0.3634 -1.0265 -0.0488 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.7228 3.2377 1.1478 35 1 0.4235 2.0303 1.2970 36 1 3.2502 1.5889 2.3598 37 1 0.6535 0.0546 2.3340 38 1 2.3356 -0.5580 2.4049 39 1 2.5296 -0.0722 4.7589 40 1 0.8263 -0.6242 4.6380 41 1 1.3393 1.7893 5.7248 42 1 -0.0156 1.6325 4.5649 43 1 2.7064 2.8697 4.1729 44 1 1.1504 3.2942 3.4058 45 1 3.0547 1.4651 -2.4251 46 1 1.6630 3.6675 -3.5156 47 1 0.7266 2.1911 -3.8497 48 1 2.9951 0.3391 -4.2307 49 1 1.8094 3.9701 -5.8664 50 1 1.4875 2.3863 -6.6482 51 1 3.5121 3.9226 -7.5730 52 1 3.7642 2.1599 -7.3879 53 1 7.2320 3.2003 -3.2556 54 1 4.7324 2.0420 -4.1839 55 1 4.0138 3.6351 -3.8165 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569759964.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:37 Heat of formation + Delta-G solvation = -105.779197 kcal Electronic energy + Delta-G solvation = -31215.808064 eV Core-core repulsion = 27251.403449 eV Total energy + Delta-G solvation = -3964.404616 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 2.81 seconds Orbital eigenvalues (eV) -41.44978 -40.23330 -39.23136 -36.76452 -35.96258 -35.24881 -34.13958 -31.71330 -31.32774 -29.84777 -29.39959 -28.67562 -27.41202 -25.56301 -24.98125 -23.00305 -22.05205 -21.49727 -21.34618 -20.70898 -20.32187 -18.98922 -18.29350 -17.76103 -17.14453 -16.96483 -16.40650 -16.24152 -16.03246 -15.80487 -15.61543 -15.48969 -14.98109 -14.76375 -14.40063 -14.28603 -14.12463 -13.98275 -13.94419 -13.58167 -13.49099 -13.36855 -12.98298 -12.93890 -12.76723 -12.49114 -12.36456 -12.17868 -12.13414 -11.97117 -11.91365 -11.86250 -11.76597 -11.74201 -11.50089 -11.47904 -11.42098 -11.22781 -11.03930 -10.93935 -10.69235 -10.53577 -10.11790 -8.88903 -7.85797 -5.23755 1.45323 1.47366 1.54756 1.66563 2.17067 2.48124 3.17428 3.29905 3.42232 3.62415 3.68354 3.77336 3.87510 3.89219 3.90520 3.95529 4.02637 4.08488 4.35088 4.44286 4.47126 4.51158 4.52430 4.57137 4.67686 4.71558 4.74277 4.77291 4.80252 4.85458 4.93114 4.94063 4.95605 5.00164 5.03066 5.10912 5.14412 5.18420 5.25568 5.26559 5.27415 5.33014 5.33360 5.38577 5.41983 5.52220 5.52875 5.55588 5.66170 5.68040 6.18691 6.49351 6.75610 7.07091 7.23049 7.74261 8.39974 9.21365 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012736 B = 0.002823 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.969787 B = 9915.491472 C =11388.804041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.124 4.124 3 C -0.102 4.102 4 H 0.101 0.899 5 C -0.089 4.089 6 C -0.089 4.089 7 C -0.127 4.127 8 C -0.126 4.126 9 C -0.124 4.124 10 C -0.125 4.125 11 C 0.518 3.482 12 O -0.580 6.580 13 N -0.720 5.720 14 C 0.120 3.880 15 C 0.108 3.892 16 O -0.552 6.552 17 C -0.107 4.107 18 C 0.128 3.872 19 N -0.623 5.623 20 C -0.247 4.247 21 H 0.079 0.921 22 C -0.061 4.061 23 N -0.940 5.940 24 Si 0.974 3.026 25 H -0.289 1.289 26 H -0.292 1.292 27 H -0.271 1.271 28 C 0.165 3.835 29 H 0.063 0.937 30 H 0.030 0.970 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.113 0.887 34 H 0.042 0.958 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.067 0.933 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.055 0.945 45 H 0.408 0.592 46 H 0.058 0.942 47 H 0.079 0.921 48 H 0.382 0.618 49 H 0.090 0.910 50 H 0.100 0.900 51 H 0.050 0.950 52 H 0.018 0.982 53 H 0.248 0.752 54 H 0.044 0.956 55 H 0.001 0.999 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.982 -9.088 14.560 20.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.161 4.161 3 C -0.123 4.123 4 H 0.119 0.881 5 C -0.127 4.127 6 C -0.107 4.107 7 C -0.164 4.164 8 C -0.163 4.163 9 C -0.162 4.162 10 C -0.163 4.163 11 C 0.306 3.694 12 O -0.460 6.460 13 N -0.372 5.372 14 C -0.005 4.005 15 C 0.066 3.934 16 O -0.359 6.359 17 C -0.145 4.145 18 C 0.003 3.997 19 N -0.350 5.350 20 C -0.376 4.376 21 H 0.097 0.903 22 C -0.255 4.255 23 N -0.588 5.588 24 Si 0.802 3.198 25 H -0.216 1.216 26 H -0.218 1.218 27 H -0.196 1.196 28 C 0.039 3.961 29 H 0.082 0.918 30 H 0.049 0.951 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.131 0.869 34 H 0.061 0.939 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.074 0.926 45 H 0.244 0.756 46 H 0.076 0.924 47 H 0.098 0.902 48 H 0.231 0.769 49 H 0.108 0.892 50 H 0.118 0.882 51 H 0.068 0.932 52 H 0.036 0.964 53 H 0.057 0.943 54 H 0.062 0.938 55 H 0.019 0.981 Dipole moment (debyes) X Y Z Total from point charges -12.692 -8.380 14.046 20.703 hybrid contribution 1.654 0.681 0.270 1.809 sum -11.038 -7.699 14.315 19.648 Atomic orbital electron populations 1.21911 0.95898 1.01900 1.01470 1.21911 0.96324 0.92775 1.05093 1.21438 1.02331 0.97327 0.91234 0.88125 1.21533 1.00823 0.98050 0.92325 1.21784 0.99926 0.95692 0.93315 1.22851 1.01973 0.95611 0.95956 1.22546 1.01413 0.96582 0.95780 1.22355 0.99830 0.95237 0.98758 1.22237 1.00268 0.98163 0.95634 1.21242 0.82565 0.80314 0.85283 1.90644 1.28648 1.40505 1.86217 1.45998 1.28321 1.54914 1.07999 1.21715 0.97332 0.98289 0.83165 1.22513 0.94228 0.81764 0.94887 1.86497 1.91033 1.16893 1.41491 1.22702 0.97331 1.00232 0.94264 1.21729 0.88181 0.97796 0.91955 1.44730 1.16323 1.68989 1.04932 1.19402 0.91151 1.26811 1.00254 0.90343 1.25579 1.01081 1.01267 0.97540 1.70072 1.36849 1.41018 1.10866 0.85165 0.78767 0.78203 0.77627 1.21582 1.21845 1.19603 1.21623 0.90834 0.96180 0.87430 0.91801 0.95089 0.91217 0.91127 0.86906 0.93922 0.91147 0.90915 0.90433 0.90086 0.91338 0.90896 0.91391 0.91877 0.91817 0.92649 0.75643 0.92352 0.90240 0.76932 0.89191 0.88161 0.93193 0.96382 0.94272 0.93837 0.98093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 8.69 71.98 0.63 -2.21 16 2 C -0.12 -2.05 5.09 30.59 0.16 -1.90 16 3 C -0.10 -2.20 2.46 -11.54 -0.03 -2.23 16 4 H 0.10 2.02 8.05 -2.38 -0.02 2.00 16 5 C -0.09 -1.93 3.29 30.60 0.10 -1.83 16 6 C -0.09 -1.48 2.90 -10.07 -0.03 -1.51 16 7 C -0.13 -1.67 4.33 31.67 0.14 -1.53 16 8 C -0.13 -1.52 6.91 31.89 0.22 -1.30 16 9 C -0.12 -1.70 6.83 31.67 0.22 -1.48 16 10 C -0.13 -2.07 6.45 31.32 0.20 -1.87 16 11 C 0.52 15.13 5.91 87.65 0.52 15.64 16 12 O -0.58 -20.99 15.73 -3.02 -0.05 -21.04 16 13 N -0.72 -20.75 5.12 -463.08 -2.37 -23.12 16 14 C 0.12 3.80 4.74 86.38 0.41 4.21 16 15 C 0.11 3.79 0.93 -9.60 -0.01 3.78 16 16 O -0.55 -18.24 13.10 -148.98 -1.95 -20.20 16 17 C -0.11 -3.59 6.26 31.99 0.20 -3.39 16 18 C 0.13 5.33 7.23 86.86 0.63 5.95 16 19 N -0.62 -31.90 3.39 -691.98 -2.35 -34.25 16 20 C -0.25 -13.85 10.23 84.03 0.86 -12.99 16 21 H 0.08 4.25 7.86 -2.91 -0.02 4.23 16 22 C -0.06 -3.40 5.40 84.86 0.46 -2.94 16 23 N -0.94 -54.22 10.67 21.65 0.23 -53.99 16 24 Si 0.97 45.35 29.57 68.60 2.03 47.38 16 25 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 26 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 27 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 28 C 0.16 7.66 4.32 86.73 0.37 8.03 16 29 H 0.06 1.14 4.79 -2.38 -0.01 1.13 16 30 H 0.03 0.74 6.82 -2.39 -0.02 0.72 16 31 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 32 H 0.07 1.11 8.14 -2.39 -0.02 1.10 16 33 H 0.11 1.42 4.14 -2.39 -0.01 1.41 16 34 H 0.04 1.10 8.10 -2.39 -0.02 1.08 16 35 H 0.07 1.61 5.84 -2.39 -0.01 1.60 16 36 H 0.07 1.23 8.05 -2.39 -0.02 1.21 16 37 H 0.08 1.04 4.85 -2.39 -0.01 1.03 16 38 H 0.08 0.90 6.56 -2.39 -0.02 0.88 16 39 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 40 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.05 1.01 7.66 -2.38 -0.02 1.00 16 45 H 0.41 10.82 7.38 -92.70 -0.68 10.14 16 46 H 0.06 2.06 8.13 -2.39 -0.02 2.05 16 47 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 48 H 0.38 10.13 8.05 -74.06 -0.60 9.53 16 49 H 0.09 2.84 8.04 -2.39 -0.02 2.82 16 50 H 0.10 2.86 8.14 -2.39 -0.02 2.84 16 51 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 52 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 53 H 0.25 13.90 8.31 -92.71 -0.77 13.13 16 54 H 0.04 2.25 6.71 -2.39 -0.02 2.23 16 55 H 0.00 0.05 7.79 -2.38 -0.02 0.03 16 Total: -1.00 -69.40 407.59 0.18 -69.22 By element: Atomic # 1 Polarization: 33.94 SS G_CDS: -0.39 Total: 33.55 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: 5.04 Total: 2.44 kcal Atomic # 7 Polarization: -106.87 SS G_CDS: -4.49 Total: -111.36 kcal Atomic # 8 Polarization: -39.24 SS G_CDS: -2.00 Total: -41.23 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -69.40 0.18 -69.22 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569759964.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.560 kcal (2) G-P(sol) polarization free energy of solvation -69.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.81 seconds