Wall clock time and date at job start Tue Mar 31 2020 22:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46718 * 2 1 4 4 H 1.08997 * 109.47528 * 54.99646 * 3 2 1 5 5 C 1.53002 * 109.47219 * 294.99626 * 3 2 1 6 6 C 1.53003 * 109.47112 * 174.99698 * 3 2 1 7 7 C 1.53002 * 109.47274 * 184.99561 * 6 3 2 8 8 C 1.50699 * 109.46867 * 180.02562 * 7 6 3 9 9 O 1.21280 * 120.00224 * 0.02562 * 8 7 6 10 10 N 1.34783 * 119.99629 * 180.02562 * 8 7 6 11 11 C 1.46924 * 120.64271 * 359.72155 * 10 8 7 12 12 C 1.53620 * 108.53629 * 126.29601 * 11 10 8 13 13 C 1.53001 * 109.27684 * 54.80841 * 12 11 10 14 14 C 1.52987 * 109.63011 * 298.65653 * 13 12 11 15 15 C 1.46929 * 120.63946 * 180.02562 * 10 8 7 16 16 C 1.53251 * 109.36158 * 178.71531 * 13 12 11 17 17 N 1.47156 * 108.40689 * 187.91342 * 16 13 12 18 18 C 1.36944 * 120.98355 * 230.49222 * 17 16 13 19 19 H 1.07999 * 119.99242 * 153.33972 * 18 17 16 20 20 C 1.38807 * 120.00186 * 333.34567 * 18 17 16 21 21 N 1.31623 * 120.00188 * 343.54320 * 20 18 17 22 22 Si 1.86801 * 120.00065 * 163.54433 * 20 18 17 23 23 H 1.48505 * 109.46929 * 59.99582 * 22 20 18 24 24 H 1.48495 * 109.47408 * 179.97438 * 22 20 18 25 25 H 1.48492 * 109.47057 * 300.00040 * 22 20 18 26 26 C 1.47153 * 118.02879 * 50.47380 * 17 16 13 27 27 C 1.53302 * 108.36882 * 309.40844 * 26 17 16 28 28 O 1.42894 * 109.54803 * 58.91203 * 13 12 11 29 29 H 1.09010 * 109.46680 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47220 * 60.00322 * 1 2 3 31 31 H 1.08998 * 109.47453 * 300.00096 * 1 2 3 32 32 H 1.08999 * 109.47220 * 119.99678 * 2 1 3 33 33 H 1.08998 * 109.47453 * 239.99904 * 2 1 3 34 34 H 1.08997 * 109.46887 * 300.00413 * 5 3 2 35 35 H 1.09001 * 109.46914 * 60.00255 * 5 3 2 36 36 H 1.08997 * 109.47061 * 180.02562 * 5 3 2 37 37 H 1.08999 * 109.47190 * 305.00211 * 6 3 2 38 38 H 1.09005 * 109.46584 * 64.99742 * 6 3 2 39 39 H 1.08997 * 109.47027 * 300.00518 * 7 6 3 40 40 H 1.09002 * 109.46685 * 60.00391 * 7 6 3 41 41 H 1.09002 * 109.58878 * 246.12734 * 11 10 8 42 42 H 1.09005 * 109.58863 * 6.54987 * 11 10 8 43 43 H 1.08993 * 109.63202 * 294.79943 * 12 11 10 44 44 H 1.09003 * 109.44724 * 174.69353 * 12 11 10 45 45 H 1.08999 * 109.48894 * 301.24788 * 14 13 12 46 46 H 1.08997 * 109.51244 * 181.18160 * 14 13 12 47 47 H 1.09005 * 109.58989 * 353.43490 * 15 10 8 48 48 H 1.08997 * 109.58817 * 113.71928 * 15 10 8 49 49 H 1.09006 * 109.67862 * 307.63960 * 16 13 12 50 50 H 1.08995 * 109.67981 * 68.14465 * 16 13 12 51 51 H 0.97001 * 120.00031 * 180.02562 * 21 20 18 52 52 H 1.08994 * 109.68234 * 69.12454 * 26 17 16 53 53 H 1.08999 * 109.68153 * 189.68953 * 26 17 16 54 54 H 1.09008 * 109.50653 * 172.27954 * 27 26 17 55 55 H 1.09006 * 109.51038 * 292.37227 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 1.6352 2.1265 -1.3074 6 6 3.5648 1.4445 0.1258 7 6 4.0644 2.8852 0.2511 8 6 5.5663 2.8870 0.3744 9 8 6.1770 1.8393 0.3626 10 7 6.2309 4.0531 0.4976 11 6 5.5057 5.3309 0.5074 12 6 5.9102 6.1124 1.7666 13 6 7.4331 6.2536 1.8060 14 6 8.0764 4.8671 1.8711 15 6 7.6951 4.0714 0.6182 16 6 7.8367 7.0607 3.0447 17 7 9.2777 7.3473 2.9634 18 6 10.1101 7.0812 4.0178 19 1 11.1561 6.8782 3.8419 20 6 9.6093 7.0722 5.3123 21 7 8.4426 7.6242 5.5705 22 14 10.5911 6.2769 6.6881 23 1 11.9047 6.9576 6.8162 24 1 9.8435 6.4004 7.9652 25 1 10.8060 4.8410 6.3767 26 6 9.7979 7.9280 1.7153 27 6 9.3004 7.0760 0.5419 28 8 7.8807 6.9340 0.6318 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 2.0698 1.5875 -2.1491 35 1 0.5489 2.1252 -1.3970 36 1 1.9988 3.1541 -1.3076 37 1 3.8570 0.8802 1.0114 38 1 4.0029 0.9836 -0.7596 39 1 3.7721 3.4494 -0.6345 40 1 3.6262 3.3459 1.1365 41 1 5.7656 5.9054 -0.3818 42 1 4.4323 5.1418 0.5219 43 1 5.5714 5.5778 2.6539 44 1 5.4537 7.1019 1.7418 45 1 7.7205 4.3424 2.7577 46 1 9.1603 4.9706 1.9202 47 1 8.0673 3.0507 0.7062 48 1 8.1285 4.5437 -0.2634 49 1 7.2774 7.9959 3.0717 50 1 7.6272 6.4818 3.9442 51 1 8.0928 7.6182 6.4752 52 1 9.4350 8.9500 1.6067 53 1 10.8877 7.9249 1.7352 54 1 9.5588 7.5644 -0.3978 55 1 9.7687 6.0925 0.5819 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570482438.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:29 Heat of formation + Delta-G solvation = -95.591663 kcal Electronic energy + Delta-G solvation = -31446.937173 eV Core-core repulsion = 27482.974321 eV Total energy + Delta-G solvation = -3963.962851 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -41.62396 -40.33367 -38.08480 -37.35319 -36.16085 -33.84574 -33.34058 -33.15013 -32.04684 -29.92404 -29.48423 -28.30397 -26.77882 -25.29747 -24.71075 -24.37329 -23.18381 -22.27768 -20.77935 -20.52421 -19.77572 -18.80501 -18.21860 -17.21187 -16.94980 -16.89137 -16.28828 -16.10519 -15.97679 -15.80106 -15.49547 -15.31942 -15.23966 -14.85640 -14.60110 -14.47055 -14.26994 -14.07944 -13.81565 -13.51854 -13.27549 -13.23892 -13.14733 -12.78121 -12.75018 -12.72245 -12.55692 -12.45934 -12.40275 -12.28054 -12.20836 -12.14059 -11.82271 -11.71243 -11.67229 -11.43108 -11.34536 -11.26149 -11.02890 -10.73956 -10.67426 -10.43854 -9.61556 -8.68786 -7.90464 -5.36689 1.42759 1.45242 1.51207 1.65723 2.05052 2.45570 2.90717 3.22932 3.50427 3.55602 3.83443 3.84238 3.95294 3.98826 4.02020 4.11999 4.18334 4.31384 4.31800 4.36663 4.43617 4.45095 4.51335 4.58160 4.60210 4.66770 4.70441 4.76284 4.77442 4.81555 4.82910 4.92376 4.94686 4.97774 5.00969 5.08635 5.12107 5.15458 5.15818 5.22312 5.27054 5.27940 5.29359 5.34743 5.37230 5.53472 5.58062 5.61131 5.62608 5.63439 6.30095 6.44353 6.48532 7.07994 7.19932 7.77322 8.30551 9.14252 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015981 B = 0.002626 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.616261 B =10660.314140 C =11412.781248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.088 4.088 4 H 0.078 0.922 5 C -0.151 4.151 6 C -0.095 4.095 7 C -0.133 4.133 8 C 0.506 3.494 9 O -0.593 6.593 10 N -0.609 5.609 11 C 0.119 3.881 12 C -0.115 4.115 13 C 0.106 3.894 14 C -0.133 4.133 15 C 0.127 3.873 16 C 0.167 3.833 17 N -0.610 5.610 18 C -0.260 4.260 19 H 0.068 0.932 20 C -0.048 4.048 21 N -0.933 5.933 22 Si 0.962 3.038 23 H -0.275 1.275 24 H -0.294 1.294 25 H -0.281 1.281 26 C 0.104 3.896 27 C 0.053 3.947 28 O -0.377 6.377 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.049 0.951 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.048 0.952 38 H 0.054 0.946 39 H 0.120 0.880 40 H 0.112 0.888 41 H 0.085 0.915 42 H 0.120 0.880 43 H 0.074 0.926 44 H 0.090 0.910 45 H 0.048 0.952 46 H 0.068 0.932 47 H 0.071 0.929 48 H 0.075 0.925 49 H -0.003 1.003 50 H 0.059 0.941 51 H 0.250 0.750 52 H 0.016 0.984 53 H 0.066 0.934 54 H 0.116 0.884 55 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.741 -8.340 -14.928 22.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.106 4.106 4 H 0.096 0.904 5 C -0.208 4.208 6 C -0.133 4.133 7 C -0.172 4.172 8 C 0.297 3.703 9 O -0.474 6.474 10 N -0.341 5.341 11 C -0.002 4.002 12 C -0.154 4.154 13 C 0.065 3.935 14 C -0.172 4.172 15 C 0.004 3.996 16 C 0.041 3.959 17 N -0.335 5.335 18 C -0.390 4.390 19 H 0.085 0.915 20 C -0.243 4.243 21 N -0.579 5.579 22 Si 0.790 3.210 23 H -0.201 1.201 24 H -0.220 1.220 25 H -0.207 1.207 26 C -0.021 4.021 27 C -0.025 4.025 28 O -0.296 6.296 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.138 0.862 40 H 0.131 0.869 41 H 0.103 0.897 42 H 0.138 0.862 43 H 0.092 0.908 44 H 0.108 0.892 45 H 0.067 0.933 46 H 0.087 0.913 47 H 0.089 0.911 48 H 0.093 0.907 49 H 0.015 0.985 50 H 0.077 0.923 51 H 0.059 0.941 52 H 0.034 0.966 53 H 0.084 0.916 54 H 0.134 0.866 55 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -14.603 -8.778 -14.920 22.647 hybrid contribution 1.276 -0.125 1.680 2.113 sum -13.327 -8.903 -13.239 20.788 Atomic orbital electron populations 1.21810 0.95024 1.01770 1.02253 1.21575 0.96552 0.96292 1.01576 1.21161 0.93469 0.96555 0.99425 0.90366 1.21951 1.01811 1.00754 0.96244 1.21343 0.95613 0.94604 1.01719 1.21832 0.88755 1.00462 1.06169 1.21516 0.91866 0.82304 0.74664 1.90650 1.71225 1.32691 1.52876 1.48286 1.07091 1.07147 1.71565 1.21934 0.97747 0.82608 0.97947 1.21925 0.92219 1.02002 0.99253 1.21937 0.94834 0.90400 0.86322 1.22136 1.01525 0.95960 0.97584 1.21337 0.80762 1.00105 0.97405 1.21171 0.83686 0.95412 0.95583 1.44297 1.04539 1.72245 1.12384 1.19433 0.92996 1.40823 0.85734 0.91469 1.25720 0.98690 1.00576 0.99338 1.70155 1.21291 1.46649 1.19807 0.85425 0.78259 0.78709 0.78604 1.20062 1.21965 1.20715 1.21779 0.98234 0.94961 0.87126 1.23037 0.81520 0.99225 0.98733 1.87772 1.22144 1.78001 1.41708 0.92766 0.91877 0.92585 0.92799 0.92395 0.93156 0.91667 0.91595 0.93295 0.92741 0.86169 0.86946 0.89721 0.86228 0.90768 0.89195 0.93290 0.91330 0.91075 0.90707 0.98460 0.92296 0.94064 0.96567 0.91568 0.86576 0.93279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.67 71.98 0.70 -1.00 16 2 C -0.12 -1.69 5.40 30.59 0.17 -1.52 16 3 C -0.09 -1.17 2.39 -10.79 -0.03 -1.20 16 4 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 5 C -0.15 -1.64 8.70 71.98 0.63 -1.02 16 6 C -0.09 -1.76 3.97 30.60 0.12 -1.63 16 7 C -0.13 -2.29 3.80 29.85 0.11 -2.18 16 8 C 0.51 13.69 7.70 87.66 0.67 14.37 16 9 O -0.59 -21.17 15.40 -3.03 -0.05 -21.21 16 10 N -0.61 -16.17 2.96 -817.96 -2.42 -18.60 16 11 C 0.12 2.53 6.13 86.51 0.53 3.06 16 12 C -0.12 -3.24 5.12 30.80 0.16 -3.08 16 13 C 0.11 3.80 0.68 -10.71 -0.01 3.79 16 14 C -0.13 -4.81 4.33 30.67 0.13 -4.68 16 15 C 0.13 3.92 6.20 86.38 0.54 4.45 16 16 C 0.17 7.88 4.09 86.34 0.35 8.23 16 17 N -0.61 -30.10 2.55 -697.61 -1.78 -31.88 16 18 C -0.26 -14.10 9.65 84.03 0.81 -13.29 16 19 H 0.07 3.55 7.88 -2.91 -0.02 3.53 16 20 C -0.05 -2.64 4.95 84.86 0.42 -2.22 16 21 N -0.93 -54.55 11.14 21.65 0.24 -54.31 16 22 Si 0.96 44.88 29.58 68.60 2.03 46.91 16 23 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 24 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 25 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 26 C 0.10 4.22 6.74 86.36 0.58 4.80 16 27 C 0.05 1.70 6.60 72.08 0.48 2.18 16 28 O -0.38 -12.80 9.00 -148.98 -1.34 -14.14 16 29 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 30 H 0.06 0.62 6.56 -2.39 -0.02 0.61 16 31 H 0.06 0.60 8.14 -2.39 -0.02 0.59 16 32 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.06 0.61 6.56 -2.39 -0.02 0.59 16 36 H 0.07 0.60 6.56 -2.39 -0.02 0.59 16 37 H 0.05 1.10 8.10 -2.39 -0.02 1.08 16 38 H 0.05 1.16 8.10 -2.38 -0.02 1.14 16 39 H 0.12 1.46 6.35 -2.39 -0.02 1.44 16 40 H 0.11 1.55 7.70 -2.39 -0.02 1.54 16 41 H 0.08 1.74 7.82 -2.39 -0.02 1.73 16 42 H 0.12 1.62 5.93 -2.38 -0.01 1.61 16 43 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 44 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 45 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 46 H 0.07 2.73 6.16 -2.39 -0.01 2.71 16 47 H 0.07 2.40 7.01 -2.38 -0.02 2.38 16 48 H 0.07 2.18 7.83 -2.39 -0.02 2.16 16 49 H 0.00 -0.14 8.14 -2.38 -0.02 -0.16 16 50 H 0.06 3.16 6.15 -2.39 -0.01 3.14 16 51 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 52 H 0.02 0.68 8.14 -2.39 -0.02 0.67 16 53 H 0.07 2.55 7.96 -2.39 -0.02 2.53 16 54 H 0.12 2.95 8.14 -2.38 -0.02 2.93 16 55 H 0.05 1.59 6.29 -2.38 -0.02 1.58 16 Total: -1.00 -69.01 407.08 3.88 -65.13 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: 0.84 Total: 19.03 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: 6.36 Total: 9.07 kcal Atomic # 7 Polarization: -100.82 SS G_CDS: -3.96 Total: -104.78 kcal Atomic # 8 Polarization: -33.97 SS G_CDS: -1.39 Total: -35.35 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -69.01 3.88 -65.13 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570482438.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.464 kcal (2) G-P(sol) polarization free energy of solvation -69.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds