Wall clock time and date at job start Tue Mar 31 2020 23:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47235 * 2 1 4 4 H 1.09001 * 109.46730 * 305.65757 * 3 2 1 5 5 C 1.53006 * 109.47041 * 185.66517 * 3 2 1 6 6 C 1.50693 * 109.47230 * 64.99773 * 5 3 2 7 7 O 1.21278 * 120.00269 * 0.02562 * 6 5 3 8 8 N 1.34777 * 120.00011 * 179.97438 * 6 5 3 9 9 C 1.47082 * 125.62738 * 0.02562 * 8 6 5 10 10 C 1.54459 * 107.29309 * 180.94838 * 9 8 6 11 11 C 1.54369 * 102.87490 * 21.50244 * 10 9 8 12 12 C 1.47575 * 125.63209 * 179.71765 * 8 6 5 13 13 C 1.52355 * 110.37808 * 207.57384 * 11 10 9 14 14 N 1.47336 * 108.40563 * 286.61867 * 13 11 10 15 15 C 1.36930 * 121.08323 * 130.83023 * 14 13 11 16 16 H 1.07995 * 120.00122 * 332.43693 * 15 14 13 17 17 C 1.38813 * 120.00263 * 152.43512 * 15 14 13 18 18 N 1.31622 * 120.00025 * 159.42616 * 17 15 14 19 19 Si 1.86795 * 119.99856 * 339.42337 * 17 15 14 20 20 H 1.48495 * 109.47374 * 90.46022 * 19 17 15 21 21 H 1.48508 * 109.47213 * 210.45892 * 19 17 15 22 22 H 1.48499 * 109.47473 * 330.45517 * 19 17 15 23 23 C 1.47163 * 117.83695 * 310.83000 * 14 13 11 24 24 C 1.53283 * 108.58055 * 51.22353 * 23 14 13 25 25 O 1.41884 * 110.70962 * 83.68067 * 11 10 9 26 26 C 1.52992 * 109.47251 * 65.66048 * 3 2 1 27 27 C 1.53002 * 109.46863 * 63.78031 * 26 3 2 28 28 C 1.52995 * 109.47281 * 183.77629 * 26 3 2 29 29 H 1.08992 * 109.47650 * 54.48702 * 1 2 3 30 30 H 1.09004 * 109.47106 * 174.49205 * 1 2 3 31 31 H 1.09000 * 109.46360 * 294.48454 * 1 2 3 32 32 H 1.09007 * 109.46987 * 239.99970 * 2 1 3 33 33 H 1.08996 * 109.47549 * 120.00301 * 2 1 3 34 34 H 1.08996 * 109.46895 * 185.00079 * 5 3 2 35 35 H 1.09000 * 109.46906 * 304.99784 * 5 3 2 36 36 H 1.09001 * 109.88001 * 300.37234 * 9 8 6 37 37 H 1.08997 * 109.87732 * 61.52552 * 9 8 6 38 38 H 1.09008 * 110.73044 * 139.84724 * 10 9 8 39 39 H 1.08999 * 110.73824 * 263.15425 * 10 9 8 40 40 H 1.09003 * 110.37696 * 275.55144 * 12 8 6 41 41 H 1.09008 * 110.37675 * 37.89655 * 12 8 6 42 42 H 1.09002 * 109.68251 * 46.34841 * 13 11 10 43 43 H 1.08999 * 109.67972 * 166.89462 * 13 11 10 44 44 H 0.96999 * 119.99846 * 180.02562 * 18 17 15 45 45 H 1.08992 * 109.62310 * 291.48944 * 23 14 13 46 46 H 1.09009 * 109.77015 * 171.03594 * 23 14 13 47 47 H 1.08995 * 109.51491 * 187.07979 * 24 23 14 48 48 H 1.09004 * 109.51456 * 66.92182 * 24 23 14 49 49 H 1.09002 * 109.47271 * 303.78442 * 26 3 2 50 50 H 1.09004 * 109.47257 * 59.99820 * 27 26 3 51 51 H 1.08999 * 109.47184 * 179.97438 * 27 26 3 52 52 H 1.08999 * 109.47272 * 299.99873 * 27 26 3 53 53 H 1.09001 * 109.46994 * 57.51711 * 28 26 3 54 54 H 1.08997 * 109.47265 * 177.50952 * 28 26 3 55 55 H 1.08997 * 109.47673 * 297.51005 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5963 1.9847 -0.8350 5 6 3.5634 1.4448 -0.1424 6 6 3.9428 0.8877 -1.4902 7 8 3.0798 0.5251 -2.2613 8 7 5.2412 0.7935 -1.8393 9 6 6.3840 1.1952 -1.0050 10 6 7.6664 0.9276 -1.8233 11 6 7.1477 0.9020 -3.2770 12 6 5.7512 0.2645 -3.1190 13 6 8.0402 0.0221 -4.1433 14 7 9.3067 0.7361 -4.3818 15 6 10.5136 0.1200 -4.1847 16 1 10.5994 -0.6824 -3.4670 17 6 11.6268 0.5266 -4.9074 18 7 12.8353 0.2501 -4.4655 19 14 11.4095 1.4663 -6.5071 20 1 11.3809 2.9240 -6.2251 21 1 12.5416 1.1606 -7.4184 22 1 10.1336 1.0613 -7.1498 23 6 9.2325 2.1330 -4.8389 24 6 8.3032 2.9064 -3.8967 25 8 7.0522 2.2178 -3.7990 26 6 1.6496 2.1215 1.3142 27 6 2.3482 1.4174 2.4792 28 6 2.0766 3.5901 1.2760 29 1 -0.3634 0.5969 -0.8364 30 1 -0.3633 -1.0230 -0.0986 31 1 -0.3632 0.4259 0.9353 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.9351 2.4655 -0.0534 35 1 4.0026 0.8285 0.6421 36 1 6.3125 2.2559 -0.7642 37 1 6.3993 0.6053 -0.0886 38 1 8.3874 1.7334 -1.6851 39 1 8.1035 -0.0335 -1.5526 40 1 5.8300 -0.8219 -3.0762 41 1 5.1015 0.5665 -3.9405 42 1 8.2400 -0.9177 -3.6285 43 1 7.5467 -0.1776 -5.0945 44 1 13.6132 0.5346 -4.9703 45 1 8.8350 2.1656 -5.8532 46 1 10.2265 2.5801 -4.8208 47 1 8.1371 3.9089 -4.2910 48 1 8.7598 2.9738 -2.9092 49 1 0.5695 2.0604 1.4479 50 1 3.4283 1.4784 2.3455 51 1 2.0704 1.9014 3.4155 52 1 2.0440 0.3711 2.5065 53 1 1.6134 4.0810 0.4200 54 1 1.7592 4.0848 2.1939 55 1 3.1612 3.6511 1.1869 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570886251.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:00 Heat of formation + Delta-G solvation = -82.987164 kcal Electronic energy + Delta-G solvation = -31565.361415 eV Core-core repulsion = 27601.945136 eV Total energy + Delta-G solvation = -3963.416279 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.71889 -40.55576 -38.65000 -37.48790 -36.33068 -33.74250 -33.22056 -33.11460 -31.11434 -30.94282 -29.32570 -27.98165 -27.66499 -25.63640 -24.99991 -23.93236 -23.27008 -23.11264 -20.81385 -20.39536 -19.32787 -18.93158 -18.43879 -17.60546 -17.43261 -16.80764 -16.63988 -16.08698 -15.92677 -15.82374 -15.56341 -15.48087 -15.02971 -14.97929 -14.55337 -14.39813 -14.34723 -13.95660 -13.84197 -13.72019 -13.64684 -13.59038 -13.43628 -13.26462 -12.88441 -12.64837 -12.53374 -12.42093 -12.32799 -12.21912 -12.15717 -12.06807 -12.02450 -11.86195 -11.59237 -11.32666 -11.31321 -11.18808 -11.08710 -11.00978 -10.66515 -10.45947 -9.62964 -8.95126 -8.19408 -5.52670 1.26124 1.40370 1.47873 1.67438 1.97919 2.37989 2.60948 2.95347 3.18232 3.48989 3.58686 3.78857 3.84009 3.88960 3.91018 4.10283 4.14758 4.17711 4.28565 4.34711 4.38770 4.41960 4.45726 4.48766 4.55269 4.59943 4.61531 4.63992 4.70072 4.74368 4.83322 4.84095 4.85408 4.88041 4.90828 4.93217 4.95820 5.05392 5.10525 5.16105 5.19047 5.21946 5.22917 5.27994 5.37711 5.42225 5.53738 5.58480 5.69037 5.78927 6.09229 6.27760 6.55779 6.80868 7.19550 7.53706 7.95793 8.99749 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.025569 B = 0.002479 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.820119 B =11292.261216 C =11444.547789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.126 4.126 3 C -0.061 4.061 4 H 0.054 0.946 5 C -0.127 4.127 6 C 0.522 3.478 7 O -0.579 6.579 8 N -0.616 5.616 9 C 0.111 3.889 10 C -0.143 4.143 11 C 0.095 3.905 12 C 0.127 3.873 13 C 0.130 3.870 14 N -0.616 5.616 15 C -0.242 4.242 16 H 0.063 0.937 17 C -0.028 4.028 18 N -0.951 5.951 19 Si 0.938 3.062 20 H -0.268 1.268 21 H -0.311 1.311 22 H -0.273 1.273 23 C 0.083 3.917 24 C 0.055 3.945 25 O -0.375 6.375 26 C -0.087 4.087 27 C -0.152 4.152 28 C -0.152 4.152 29 H 0.042 0.958 30 H 0.051 0.949 31 H 0.066 0.934 32 H 0.050 0.950 33 H 0.070 0.930 34 H 0.108 0.892 35 H 0.114 0.886 36 H 0.081 0.919 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.067 0.933 42 H 0.078 0.922 43 H 0.030 0.970 44 H 0.262 0.738 45 H 0.029 0.971 46 H 0.067 0.933 47 H 0.116 0.884 48 H 0.063 0.937 49 H 0.075 0.925 50 H 0.062 0.938 51 H 0.060 0.940 52 H 0.057 0.943 53 H 0.047 0.953 54 H 0.062 0.938 55 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.274 5.469 14.830 26.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.164 4.164 3 C -0.080 4.080 4 H 0.073 0.927 5 C -0.166 4.166 6 C 0.313 3.687 7 O -0.460 6.460 8 N -0.350 5.350 9 C -0.011 4.011 10 C -0.181 4.181 11 C 0.053 3.947 12 C 0.004 3.996 13 C 0.004 3.996 14 N -0.342 5.342 15 C -0.372 4.372 16 H 0.080 0.920 17 C -0.223 4.223 18 N -0.596 5.596 19 Si 0.767 3.233 20 H -0.195 1.195 21 H -0.240 1.240 22 H -0.198 1.198 23 C -0.042 4.042 24 C -0.022 4.022 25 O -0.294 6.294 26 C -0.106 4.106 27 C -0.209 4.209 28 C -0.209 4.209 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.126 0.874 35 H 0.132 0.868 36 H 0.100 0.900 37 H 0.114 0.886 38 H 0.102 0.898 39 H 0.104 0.896 40 H 0.111 0.889 41 H 0.086 0.914 42 H 0.097 0.903 43 H 0.048 0.952 44 H 0.071 0.929 45 H 0.047 0.953 46 H 0.085 0.915 47 H 0.134 0.866 48 H 0.081 0.919 49 H 0.094 0.906 50 H 0.081 0.919 51 H 0.079 0.921 52 H 0.076 0.924 53 H 0.066 0.934 54 H 0.081 0.919 55 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -21.821 5.370 14.386 26.682 hybrid contribution 0.965 0.058 -1.472 1.761 sum -20.856 5.428 12.914 25.124 Atomic orbital electron populations 1.21734 0.95570 1.01328 1.01679 1.21697 0.96444 0.96422 1.01799 1.20927 0.92696 0.96580 0.97827 0.92723 1.21877 0.98450 1.03589 0.92666 1.21081 0.79901 0.77578 0.90113 1.90654 1.48891 1.51487 1.54926 1.48668 1.05974 1.62774 1.17536 1.22161 0.83489 1.01398 0.94068 1.22990 0.97172 1.04086 0.93812 1.22284 0.94547 0.84303 0.93549 1.21961 0.92281 0.98215 0.87188 1.21465 0.85701 0.95072 0.97352 1.44452 1.01852 1.08197 1.79666 1.18801 0.85042 1.16915 1.16399 0.91970 1.25801 0.94888 1.00824 1.00787 1.69932 0.98071 1.51713 1.39917 0.86071 0.76170 0.79034 0.81995 1.19475 1.24028 1.19810 1.22075 0.99596 0.85779 0.96706 1.23105 0.84160 0.95554 0.99404 1.87692 1.30333 1.26654 1.84729 1.21129 1.00749 0.94989 0.93718 1.21965 1.00956 1.00518 0.97450 1.21922 1.01752 0.95425 1.01779 0.93883 0.93015 0.91506 0.93104 0.91144 0.87367 0.86793 0.90025 0.88625 0.89806 0.89629 0.88944 0.91413 0.90327 0.95220 0.92859 0.95297 0.91478 0.86612 0.91918 0.90634 0.91910 0.92111 0.92370 0.93411 0.91859 0.92105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 9.55 71.98 0.69 -1.72 16 2 C -0.13 -2.35 5.05 30.59 0.15 -2.19 16 3 C -0.06 -1.05 1.29 -10.79 -0.01 -1.06 16 4 H 0.05 1.19 7.95 -2.39 -0.02 1.17 16 5 C -0.13 -2.11 3.59 29.85 0.11 -2.00 16 6 C 0.52 13.23 7.52 87.65 0.66 13.89 16 7 O -0.58 -19.11 14.26 -3.02 -0.04 -19.15 16 8 N -0.62 -15.23 3.33 -812.16 -2.71 -17.94 16 9 C 0.11 2.20 6.50 86.76 0.56 2.76 16 10 C -0.14 -3.74 5.86 31.55 0.18 -3.55 16 11 C 0.09 2.93 0.84 -10.09 -0.01 2.92 16 12 C 0.13 3.60 6.10 86.62 0.53 4.13 16 13 C 0.13 4.80 5.40 86.01 0.46 5.27 16 14 N -0.62 -27.55 2.74 -698.87 -1.91 -29.47 16 15 C -0.24 -12.96 10.09 84.03 0.85 -12.12 16 16 H 0.06 3.58 8.06 -2.91 -0.02 3.56 16 17 C -0.03 -1.55 5.24 84.86 0.44 -1.10 16 18 N -0.95 -57.44 13.97 21.65 0.30 -57.13 16 19 Si 0.94 45.34 24.34 68.60 1.67 47.01 16 20 H -0.27 -12.01 6.54 99.48 0.65 -11.36 16 21 H -0.31 -15.44 7.11 99.48 0.71 -14.74 16 22 H -0.27 -13.10 6.76 99.48 0.67 -12.42 16 23 C 0.08 3.40 4.38 86.35 0.38 3.78 16 24 C 0.06 1.78 6.78 72.08 0.49 2.27 16 25 O -0.38 -12.46 10.29 -148.95 -1.53 -13.99 16 26 C -0.09 -1.07 2.56 -10.80 -0.03 -1.10 16 27 C -0.15 -1.52 8.48 71.98 0.61 -0.91 16 28 C -0.15 -1.74 8.87 71.98 0.64 -1.10 16 29 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 31 H 0.07 0.88 6.77 -2.39 -0.02 0.86 16 32 H 0.05 1.28 5.87 -2.38 -0.01 1.26 16 33 H 0.07 1.10 6.27 -2.39 -0.01 1.09 16 34 H 0.11 1.52 6.35 -2.39 -0.02 1.50 16 35 H 0.11 1.45 6.66 -2.39 -0.02 1.43 16 36 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.08 2.35 6.07 -2.38 -0.01 2.34 16 39 H 0.09 2.28 7.82 -2.39 -0.02 2.26 16 40 H 0.09 2.42 8.00 -2.39 -0.02 2.40 16 41 H 0.07 2.16 8.05 -2.38 -0.02 2.14 16 42 H 0.08 2.81 7.72 -2.39 -0.02 2.79 16 43 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 45 H 0.03 1.21 7.02 -2.39 -0.02 1.19 16 46 H 0.07 2.94 4.73 -2.38 -0.01 2.92 16 47 H 0.12 3.07 8.14 -2.39 -0.02 3.05 16 48 H 0.06 1.94 6.22 -2.39 -0.01 1.93 16 49 H 0.08 0.92 6.54 -2.39 -0.02 0.91 16 50 H 0.06 0.57 6.48 -2.39 -0.02 0.55 16 51 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 52 H 0.06 0.60 6.41 -2.39 -0.02 0.58 16 53 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 54 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 55 H 0.06 0.65 6.54 -2.39 -0.02 0.63 16 Total: -1.00 -68.17 398.56 3.25 -64.91 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: 0.77 Total: 17.61 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: 6.71 Total: 8.15 kcal Atomic # 7 Polarization: -100.22 SS G_CDS: -4.32 Total: -104.54 kcal Atomic # 8 Polarization: -31.56 SS G_CDS: -1.58 Total: -33.14 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 1.67 Total: 47.01 kcal Total: -68.17 3.25 -64.91 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570886251.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.076 kcal (2) G-P(sol) polarization free energy of solvation -68.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds