Wall clock time and date at job start Tue Mar 31 2020 23:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42898 * 109.47061 * 2 1 4 4 C 1.42907 * 113.99890 * 184.48388 * 3 2 1 5 5 H 1.08996 * 109.46836 * 329.05676 * 4 3 2 6 6 C 1.52994 * 109.47000 * 89.06157 * 4 3 2 7 7 C 1.52997 * 109.47445 * 58.06480 * 6 4 3 8 8 C 1.50699 * 109.46899 * 209.06224 * 4 3 2 9 9 O 1.21284 * 119.99989 * 349.39962 * 8 4 3 10 10 N 1.34776 * 119.99984 * 169.40451 * 8 4 3 11 11 C 1.47175 * 125.66144 * 354.62574 * 10 8 4 12 12 C 1.53680 * 107.11386 * 178.52213 * 11 10 8 13 13 C 1.54536 * 103.64333 * 338.44159 * 12 11 10 14 14 C 1.47483 * 125.65993 * 174.64742 * 10 8 4 15 15 H 1.08994 * 110.44622 * 85.10080 * 14 10 8 16 16 C 1.52995 * 110.35855 * 322.85265 * 14 10 8 17 17 C 1.52273 * 110.67082 * 96.51651 * 12 11 10 18 18 C 1.53314 * 109.41875 * 183.14718 * 17 12 11 19 19 N 1.46932 * 108.70382 * 306.49071 * 18 17 12 20 20 C 1.36936 * 120.56355 * 234.25224 * 19 18 17 21 21 H 1.07999 * 120.00086 * 151.30412 * 20 19 18 22 22 C 1.38819 * 119.99696 * 331.31137 * 20 19 18 23 23 N 1.31617 * 119.99619 * 160.21503 * 22 20 19 24 24 Si 1.86792 * 120.00126 * 340.20713 * 22 20 19 25 25 H 1.48506 * 109.46988 * 91.55821 * 24 22 20 26 26 H 1.48500 * 109.47387 * 211.55467 * 24 22 20 27 27 H 1.48499 * 109.47329 * 331.55908 * 24 22 20 28 28 C 1.46928 * 118.87393 * 54.23195 * 19 18 17 29 29 C 1.52272 * 110.68492 * 220.35973 * 12 11 10 30 30 H 1.09008 * 109.47015 * 300.00207 * 1 2 3 31 31 H 1.08997 * 109.47272 * 60.00335 * 1 2 3 32 32 H 1.09000 * 109.47210 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47257 * 239.99679 * 2 1 3 34 34 H 1.09001 * 109.46891 * 119.99947 * 2 1 3 35 35 H 1.09000 * 109.47086 * 178.06862 * 6 4 3 36 36 H 1.08996 * 109.47129 * 298.06349 * 6 4 3 37 37 H 1.08993 * 109.47324 * 185.67545 * 7 6 4 38 38 H 1.08993 * 109.47110 * 305.68103 * 7 6 4 39 39 H 1.09007 * 109.46759 * 65.68366 * 7 6 4 40 40 H 1.09002 * 109.91314 * 59.15401 * 11 10 8 41 41 H 1.09005 * 110.06556 * 297.97537 * 11 10 8 42 42 H 1.08996 * 111.01634 * 276.77612 * 13 12 11 43 43 H 1.09001 * 111.01663 * 152.89350 * 13 12 11 44 44 H 1.09004 * 109.47466 * 304.52894 * 16 14 10 45 45 H 1.09000 * 109.47419 * 184.52639 * 16 14 10 46 46 H 1.08997 * 109.47018 * 64.52369 * 16 14 10 47 47 H 1.09000 * 109.48272 * 303.13172 * 17 12 11 48 48 H 1.09003 * 109.48340 * 63.15961 * 17 12 11 49 49 H 1.09005 * 109.59844 * 186.72950 * 18 17 12 50 50 H 1.08997 * 109.72838 * 66.33073 * 18 17 12 51 51 H 0.97003 * 120.00054 * 179.97438 * 23 22 20 52 52 H 1.08998 * 109.60093 * 185.99480 * 28 19 18 53 53 H 1.09001 * 109.72942 * 65.60475 * 28 19 18 54 54 H 1.08996 * 109.47973 * 296.83854 * 29 12 11 55 55 H 1.08993 * 109.48043 * 56.86155 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4272 1.4614 -0.1021 5 1 3.8958 0.5984 0.3707 6 6 3.8297 1.5162 -1.5771 7 6 3.1336 2.6996 -2.2522 8 6 3.8808 2.7211 0.5896 9 8 3.0648 3.5435 0.9483 10 7 5.1934 2.9338 0.8096 11 6 6.2763 1.9772 0.5299 12 6 7.5974 2.6675 0.9042 13 6 7.2472 4.1720 0.8619 14 6 5.7829 4.1637 1.3708 15 1 5.7603 4.1340 2.4601 16 6 5.0341 5.3951 0.8574 17 6 8.0331 2.2693 2.3078 18 6 9.3090 3.0329 2.6813 19 7 10.3131 2.8149 1.6310 20 6 11.5580 2.3391 1.9457 21 1 12.1122 1.7576 1.2239 22 6 12.1074 2.6042 3.1927 23 7 13.0901 1.8581 3.6508 24 14 11.4523 4.0199 4.2202 25 1 10.3733 3.5257 5.1129 26 1 12.5526 4.5868 5.0406 27 1 10.9100 5.0725 3.3241 28 6 9.9586 3.1156 0.2372 29 6 8.6785 2.3513 -0.1204 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 4.9101 1.6378 -1.6546 36 1 3.5321 0.5905 -2.0695 37 1 3.3395 2.6800 -3.3223 38 1 2.0584 2.6307 -2.0877 39 1 3.5072 3.6314 -1.8274 40 1 6.2794 1.7191 -0.5291 41 1 6.1447 1.0772 1.1307 42 1 7.3051 4.5584 -0.1557 43 1 7.8907 4.7421 1.5320 44 1 5.0315 5.3906 -0.2326 45 1 5.5298 6.2974 1.2157 46 1 4.0076 5.3749 1.2232 47 1 7.2423 2.5139 3.0171 48 1 8.2291 1.1974 2.3374 49 1 9.6902 2.6642 3.6337 50 1 9.0902 4.0975 2.7626 51 1 13.4744 2.0435 4.5220 52 1 10.7680 2.8016 -0.4219 53 1 9.7890 4.1863 0.1234 54 1 8.8813 1.2803 -0.1161 55 1 8.3396 2.6530 -1.1114 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656394595.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:04 Heat of formation + Delta-G solvation = -80.464273 kcal Electronic energy + Delta-G solvation = -32185.029924 eV Core-core repulsion = 28221.723046 eV Total energy + Delta-G solvation = -3963.306878 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.94842 -40.34663 -38.79211 -37.51432 -34.95223 -34.69779 -32.99620 -32.68332 -31.96809 -31.81232 -28.94593 -27.87283 -27.17368 -25.57034 -24.48873 -24.19605 -23.52370 -22.62722 -22.19185 -20.07656 -19.74019 -18.51673 -18.03414 -17.74080 -17.25590 -17.07203 -16.93777 -16.36762 -15.91063 -15.48364 -15.27718 -15.23318 -15.04792 -14.95509 -14.85278 -14.35964 -14.19690 -14.13144 -13.85114 -13.65778 -13.55026 -13.30573 -13.20042 -13.11838 -13.05695 -12.87969 -12.72709 -12.58688 -12.29914 -12.24151 -12.17710 -12.08036 -12.00812 -11.88376 -11.79218 -11.59796 -11.54336 -11.11303 -11.02986 -10.81623 -10.63458 -10.30516 -9.65518 -8.84558 -8.14332 -5.45433 1.30167 1.41614 1.49700 1.56669 1.69599 2.42990 2.83029 3.09789 3.35918 3.37780 3.48876 3.71482 3.74194 3.79275 3.95107 4.06518 4.13725 4.16959 4.26006 4.27625 4.30605 4.40026 4.43300 4.46057 4.51857 4.53214 4.56258 4.67303 4.69889 4.75020 4.79391 4.81511 4.84708 4.86877 4.96577 5.02044 5.04481 5.06225 5.10296 5.13494 5.19759 5.21569 5.25558 5.26759 5.30167 5.34233 5.37407 5.48573 5.59271 5.92309 6.13990 6.16896 6.52348 6.97357 7.15771 7.67547 8.08169 9.05840 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.019763 B = 0.002906 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.460936 B = 9632.460458 C = 9811.093542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.046 3.954 3 O -0.384 6.384 4 C 0.077 3.923 5 H 0.101 0.899 6 C -0.136 4.136 7 C -0.144 4.144 8 C 0.530 3.470 9 O -0.563 6.563 10 N -0.608 5.608 11 C 0.108 3.892 12 C -0.054 4.054 13 C -0.114 4.114 14 C 0.134 3.866 15 H 0.065 0.935 16 C -0.152 4.152 17 C -0.111 4.111 18 C 0.122 3.878 19 N -0.618 5.618 20 C -0.240 4.240 21 H 0.053 0.947 22 C -0.036 4.036 23 N -0.959 5.959 24 Si 0.943 3.057 25 H -0.278 1.278 26 H -0.316 1.316 27 H -0.259 1.259 28 C 0.143 3.857 29 C -0.107 4.107 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.094 0.906 33 H 0.070 0.930 34 H 0.054 0.946 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.072 0.928 38 H 0.050 0.950 39 H 0.032 0.968 40 H 0.098 0.902 41 H 0.079 0.921 42 H 0.091 0.909 43 H 0.077 0.923 44 H 0.055 0.945 45 H 0.073 0.927 46 H 0.057 0.943 47 H 0.066 0.934 48 H 0.061 0.939 49 H 0.043 0.957 50 H 0.034 0.966 51 H 0.259 0.741 52 H 0.054 0.946 53 H 0.036 0.964 54 H 0.062 0.938 55 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.661 -2.313 -12.259 25.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.030 4.030 3 O -0.303 6.303 4 C 0.015 3.985 5 H 0.119 0.881 6 C -0.174 4.174 7 C -0.201 4.201 8 C 0.319 3.681 9 O -0.441 6.441 10 N -0.343 5.343 11 C -0.014 4.014 12 C -0.054 4.054 13 C -0.152 4.152 14 C 0.032 3.968 15 H 0.083 0.917 16 C -0.210 4.210 17 C -0.150 4.150 18 C -0.003 4.003 19 N -0.342 5.342 20 C -0.370 4.370 21 H 0.071 0.929 22 C -0.231 4.231 23 N -0.606 5.606 24 Si 0.772 3.228 25 H -0.205 1.205 26 H -0.245 1.245 27 H -0.184 1.184 28 C 0.018 3.982 29 C -0.146 4.146 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.112 0.888 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.110 0.890 36 H 0.115 0.885 37 H 0.091 0.909 38 H 0.069 0.931 39 H 0.051 0.949 40 H 0.116 0.884 41 H 0.097 0.903 42 H 0.110 0.890 43 H 0.095 0.905 44 H 0.074 0.926 45 H 0.092 0.908 46 H 0.076 0.924 47 H 0.085 0.915 48 H 0.080 0.920 49 H 0.061 0.939 50 H 0.051 0.949 51 H 0.068 0.932 52 H 0.073 0.927 53 H 0.054 0.946 54 H 0.081 0.919 55 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -23.222 -1.758 -11.980 26.189 hybrid contribution 0.598 0.428 1.254 1.454 sum -22.624 -1.329 -10.726 25.073 Atomic orbital electron populations 1.21748 0.93026 1.03380 1.02437 1.22809 0.96356 0.82474 1.01313 1.88021 1.19304 1.28240 1.94725 1.21985 0.83642 0.95514 0.97313 0.88129 1.22024 1.02074 1.01006 0.92270 1.21611 1.00755 0.96996 1.00747 1.20450 0.80628 0.88471 0.78582 1.90646 1.52980 1.47849 1.52638 1.48606 1.05169 1.17559 1.63013 1.22345 0.84644 0.91919 1.02527 1.20855 0.93800 0.95273 0.95495 1.22918 0.93363 0.96018 1.02865 1.21933 0.92826 0.84677 0.97388 0.91719 1.21997 1.01011 0.96833 1.01157 1.21795 0.96532 1.00427 0.96241 1.21401 0.89857 0.97240 0.91772 1.44464 1.09523 1.76729 1.03523 1.18878 0.93422 1.24884 0.99848 0.92878 1.25905 0.97208 1.00607 0.99336 1.69956 1.30516 1.40407 1.19717 0.85978 0.76054 0.82008 0.78724 1.20465 1.24539 1.18351 1.21140 0.95947 0.97119 0.83980 1.21790 0.94049 1.00889 0.97862 0.93144 0.92168 0.88782 0.91171 0.92761 0.89005 0.88502 0.90929 0.93099 0.94922 0.88409 0.90282 0.89024 0.90468 0.92613 0.90776 0.92366 0.91528 0.91986 0.93913 0.94876 0.93161 0.92726 0.94596 0.91908 0.88870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 10.28 71.98 0.74 -1.18 16 2 C 0.05 0.67 6.44 71.98 0.46 1.14 16 3 O -0.38 -8.51 8.69 -130.16 -1.13 -9.65 16 4 C 0.08 1.45 2.21 29.85 0.07 1.52 16 5 H 0.10 1.48 7.62 -2.39 -0.02 1.46 16 6 C -0.14 -1.93 5.77 30.59 0.18 -1.75 16 7 C -0.14 -2.53 9.50 71.98 0.68 -1.85 16 8 C 0.53 13.49 5.82 87.66 0.51 14.00 16 9 O -0.56 -19.01 14.42 15.78 0.23 -18.79 16 10 N -0.61 -13.62 3.25 -788.66 -2.56 -16.18 16 11 C 0.11 1.98 5.37 86.48 0.46 2.45 16 12 C -0.05 -1.25 0.55 -51.91 -0.03 -1.28 16 13 C -0.11 -2.58 4.35 31.81 0.14 -2.45 16 14 C 0.13 3.19 3.42 45.50 0.16 3.35 16 15 H 0.06 1.68 7.75 -2.39 -0.02 1.66 16 16 C -0.15 -3.62 8.66 71.98 0.62 -2.99 16 17 C -0.11 -3.30 4.74 30.46 0.14 -3.16 16 18 C 0.12 4.79 3.87 86.40 0.33 5.12 16 19 N -0.62 -26.79 2.74 -698.59 -1.92 -28.70 16 20 C -0.24 -13.08 10.02 84.04 0.84 -12.24 16 21 H 0.05 3.16 8.06 -2.91 -0.02 3.14 16 22 C -0.04 -2.07 5.23 84.86 0.44 -1.63 16 23 N -0.96 -59.66 13.97 21.65 0.30 -59.36 16 24 Si 0.94 45.96 24.35 68.60 1.67 47.63 16 25 H -0.28 -12.89 6.58 99.48 0.65 -12.23 16 26 H -0.32 -15.91 7.11 99.48 0.71 -15.20 16 27 H -0.26 -11.95 6.72 99.48 0.67 -11.28 16 28 C 0.14 4.76 6.22 86.40 0.54 5.30 16 29 C -0.11 -2.58 4.72 30.46 0.14 -2.44 16 30 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.07 0.72 7.75 -2.39 -0.02 0.70 16 34 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.09 1.09 5.75 -2.39 -0.01 1.07 16 36 H 0.10 0.97 7.77 -2.39 -0.02 0.95 16 37 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.05 1.04 7.46 -2.39 -0.02 1.03 16 39 H 0.03 0.70 7.48 -2.38 -0.02 0.69 16 40 H 0.10 1.34 5.59 -2.39 -0.01 1.33 16 41 H 0.08 1.36 7.83 -2.38 -0.02 1.34 16 42 H 0.09 1.83 7.91 -2.39 -0.02 1.82 16 43 H 0.08 2.00 6.08 -2.39 -0.01 1.98 16 44 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 45 H 0.07 1.53 8.14 -2.39 -0.02 1.52 16 46 H 0.06 1.67 6.13 -2.39 -0.01 1.66 16 47 H 0.07 1.83 7.47 -2.39 -0.02 1.81 16 48 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 49 H 0.04 1.93 4.52 -2.38 -0.01 1.92 16 50 H 0.03 1.27 5.46 -2.39 -0.01 1.25 16 51 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 52 H 0.05 1.90 7.93 -2.39 -0.02 1.88 16 53 H 0.04 1.13 7.56 -2.39 -0.02 1.12 16 54 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 55 H 0.09 1.66 8.11 -2.39 -0.02 1.64 16 Total: -1.00 -72.29 400.83 3.79 -68.50 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: 0.76 Total: 14.64 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: 6.44 Total: 1.91 kcal Atomic # 7 Polarization: -100.07 SS G_CDS: -4.17 Total: -104.24 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -0.90 Total: -28.43 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 1.67 Total: 47.63 kcal Total: -72.29 3.79 -68.50 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656394595.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.963 kcal (2) G-P(sol) polarization free energy of solvation -72.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds