Wall clock time and date at job start Tue Mar 31 2020 22:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.46990 * 2 1 4 4 H 1.09000 * 109.87818 * 55.80863 * 3 2 1 5 5 C 1.54321 * 109.88199 * 294.79075 * 3 2 1 6 6 H 1.08996 * 110.72230 * 336.93051 * 5 3 2 7 7 N 1.46496 * 110.72001 * 100.02875 * 5 3 2 8 8 C 1.34781 * 120.00157 * 202.83490 * 7 5 3 9 9 O 1.21283 * 119.99486 * 359.72661 * 8 7 5 10 10 C 1.50695 * 120.00105 * 179.72312 * 8 7 5 11 11 C 1.52998 * 109.47068 * 179.97438 * 10 8 7 12 12 C 1.53003 * 109.47371 * 180.02562 * 11 10 8 13 13 C 1.52997 * 109.47491 * 180.02562 * 12 11 10 14 14 C 1.53183 * 109.54300 * 294.82356 * 13 12 11 15 15 C 1.53102 * 109.15963 * 183.24020 * 14 13 12 16 16 O 1.42905 * 109.48237 * 57.47385 * 15 14 13 17 17 C 1.42896 * 114.10115 * 298.88468 * 16 15 14 18 18 C 1.53095 * 109.41378 * 61.16143 * 17 16 15 19 19 C 1.55160 * 103.10326 * 218.48248 * 5 3 2 20 20 C 1.55114 * 101.48776 * 35.28229 * 19 5 3 21 21 N 1.47026 * 109.88090 * 176.98342 * 3 2 1 22 22 C 1.36930 * 125.64947 * 298.39426 * 21 3 2 23 23 H 1.08001 * 120.00129 * 345.37540 * 22 21 3 24 24 C 1.38812 * 120.00174 * 165.38372 * 22 21 3 25 25 N 1.31619 * 120.00101 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 120.00346 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.46923 * 59.99708 * 26 24 22 28 28 H 1.48497 * 109.47236 * 179.97438 * 26 24 22 29 29 H 1.48499 * 109.46886 * 300.00211 * 26 24 22 30 30 H 1.09005 * 109.47435 * 185.57731 * 1 2 3 31 31 H 1.09007 * 109.47316 * 305.57144 * 1 2 3 32 32 H 1.08997 * 109.47525 * 65.57127 * 1 2 3 33 33 H 1.09003 * 109.47101 * 239.99692 * 2 1 3 34 34 H 1.09005 * 109.47501 * 120.00151 * 2 1 3 35 35 H 0.97002 * 120.00194 * 22.56021 * 7 5 3 36 36 H 1.09000 * 109.47209 * 300.00233 * 10 8 7 37 37 H 1.08998 * 109.47063 * 60.00450 * 10 8 7 38 38 H 1.09000 * 109.47376 * 300.00229 * 11 10 8 39 39 H 1.09005 * 109.47375 * 60.00320 * 11 10 8 40 40 H 1.09000 * 109.47048 * 300.00418 * 12 11 10 41 41 H 1.08993 * 109.47181 * 60.00091 * 12 11 10 42 42 H 1.08998 * 109.54639 * 54.99556 * 13 12 11 43 43 H 1.09000 * 109.51864 * 303.05959 * 14 13 12 44 44 H 1.09002 * 109.52236 * 63.24535 * 14 13 12 45 45 H 1.09000 * 109.40317 * 297.49331 * 15 14 13 46 46 H 1.08996 * 109.48393 * 177.50185 * 15 14 13 47 47 H 1.09003 * 109.48258 * 301.18301 * 17 16 15 48 48 H 1.09000 * 109.48644 * 181.14336 * 17 16 15 49 49 H 1.09004 * 109.52608 * 182.48813 * 18 17 16 50 50 H 1.08994 * 109.57419 * 62.32753 * 18 17 16 51 51 H 1.08999 * 111.00567 * 153.49327 * 19 5 3 52 52 H 1.09003 * 111.00104 * 277.33600 * 19 5 3 53 53 H 1.09000 * 110.42311 * 204.30037 * 20 19 5 54 54 H 1.08995 * 110.30637 * 82.08968 * 20 19 5 55 55 H 0.96993 * 120.00337 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6203 1.9839 0.8479 5 6 1.6411 2.1401 -1.3175 6 1 1.4633 1.4066 -2.1038 7 7 0.4592 2.9829 -1.1206 8 6 -0.3208 3.3061 -2.1712 9 8 -0.0412 2.9032 -3.2805 10 6 -1.5401 4.1679 -1.9676 11 6 -2.2423 4.3831 -3.3097 12 6 -3.4800 5.2587 -3.1032 13 6 -4.1826 5.4734 -4.4452 14 6 -3.2725 6.2797 -5.3769 15 6 -4.0148 6.5589 -6.6865 16 8 -5.2316 7.2538 -6.4059 17 6 -6.1415 6.5263 -5.5784 18 6 -5.4855 6.2477 -4.2234 19 6 2.8850 3.0072 -1.6469 20 6 4.0370 2.0989 -1.1430 21 7 3.5083 1.4537 0.0728 22 6 4.2604 0.9479 1.0992 23 1 3.7942 0.7099 2.0439 24 6 5.6220 0.7412 0.9257 25 7 6.1902 1.0310 -0.2257 26 14 6.6482 0.0519 2.3261 27 1 6.1282 -1.2853 2.7091 28 1 8.0617 -0.0737 1.8889 29 1 6.5700 0.9663 3.4936 30 1 -0.3634 -1.0228 0.0999 31 1 -0.3634 0.5978 0.8359 32 1 -0.3634 0.4250 -0.9356 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 0.2356 3.3052 -0.2334 36 1 -2.2222 3.6746 -1.2752 37 1 -1.2393 5.1316 -1.5567 38 1 -1.5600 4.8766 -4.0019 39 1 -2.5431 3.4195 -3.7212 40 1 -4.1625 4.7656 -2.4110 41 1 -3.1790 6.2222 -2.6921 42 1 -4.4051 4.5076 -4.8990 43 1 -3.0087 7.2240 -4.9007 44 1 -2.3668 5.7098 -5.5843 45 1 -4.2412 5.6152 -7.1827 46 1 -3.3885 7.1703 -7.3362 47 1 -6.3957 5.5821 -6.0601 48 1 -7.0473 7.1141 -5.4297 49 1 -6.1611 5.6548 -3.6067 50 1 -5.2679 7.1908 -3.7223 51 1 2.9644 3.1851 -2.7193 52 1 2.8619 3.9482 -1.0971 53 1 4.9159 2.6972 -0.9031 54 1 4.2832 1.3485 -1.8941 55 1 7.1415 0.8862 -0.3471 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656714095.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:51 Heat of formation + Delta-G solvation = -114.344550 kcal Electronic energy + Delta-G solvation = -29972.363528 eV Core-core repulsion = 26007.587490 eV Total energy + Delta-G solvation = -3964.776037 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.06258 -40.34999 -39.30161 -36.78679 -35.57245 -34.27776 -33.69949 -33.31154 -31.97387 -30.88859 -29.10472 -27.88725 -26.38341 -25.00290 -24.39447 -23.58409 -22.37552 -21.92480 -21.48648 -20.94490 -20.71020 -18.76020 -17.89725 -17.36571 -17.00419 -16.95407 -16.73824 -16.62858 -15.89864 -15.71518 -15.54870 -15.40992 -15.29521 -14.89788 -14.56579 -14.49636 -14.29141 -13.80003 -13.77587 -13.54842 -13.28530 -13.20891 -12.88677 -12.78447 -12.67214 -12.63545 -12.56101 -12.38601 -12.21567 -12.18862 -12.06838 -12.00161 -11.88536 -11.78724 -11.57491 -11.56873 -11.35746 -11.14155 -11.11710 -10.77899 -10.65794 -10.37384 -9.92207 -8.83429 -7.85629 -5.23848 1.46601 1.49511 1.55678 1.76309 2.23798 2.52281 3.00206 3.33984 3.56109 3.71573 3.79886 3.85398 3.88457 3.92210 3.99848 4.12151 4.20121 4.21870 4.27578 4.34807 4.37450 4.41367 4.54029 4.54846 4.61212 4.64352 4.70007 4.75533 4.77098 4.80023 4.81192 4.87529 4.91005 4.98807 5.01546 5.06310 5.12753 5.17472 5.18777 5.19632 5.23032 5.32440 5.34785 5.45984 5.48896 5.50675 5.56769 5.57951 5.70155 5.71401 6.23097 6.29524 6.68699 7.08489 7.38855 7.76534 8.44016 9.25510 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.029365 B = 0.001813 C = 0.001755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.289225 B =15437.227734 C =15954.739714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.127 4.127 3 C 0.158 3.842 4 H 0.054 0.946 5 C 0.157 3.843 6 H 0.071 0.929 7 N -0.705 5.705 8 C 0.507 3.493 9 O -0.590 6.590 10 C -0.131 4.131 11 C -0.101 4.101 12 C -0.104 4.104 13 C -0.091 4.091 14 C -0.152 4.152 15 C 0.056 3.944 16 O -0.407 6.407 17 C 0.053 3.947 18 C -0.146 4.146 19 C -0.141 4.141 20 C 0.182 3.818 21 N -0.613 5.613 22 C -0.232 4.232 23 H 0.083 0.917 24 C -0.065 4.065 25 N -0.950 5.950 26 Si 0.976 3.024 27 H -0.278 1.278 28 H -0.298 1.298 29 H -0.274 1.274 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.048 0.952 33 H 0.032 0.968 34 H 0.049 0.951 35 H 0.414 0.586 36 H 0.120 0.880 37 H 0.115 0.885 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.072 0.928 45 H 0.052 0.948 46 H 0.097 0.903 47 H 0.053 0.947 48 H 0.103 0.897 49 H 0.088 0.912 50 H 0.069 0.931 51 H 0.062 0.938 52 H 0.073 0.927 53 H 0.040 0.960 54 H -0.009 1.009 55 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.240 10.825 -4.682 28.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.167 4.167 3 C 0.052 3.948 4 H 0.072 0.928 5 C 0.051 3.949 6 H 0.089 0.911 7 N -0.357 5.357 8 C 0.296 3.704 9 O -0.470 6.470 10 C -0.170 4.170 11 C -0.139 4.139 12 C -0.141 4.141 13 C -0.109 4.109 14 C -0.189 4.189 15 C -0.021 4.021 16 O -0.327 6.327 17 C -0.024 4.024 18 C -0.184 4.184 19 C -0.181 4.181 20 C 0.056 3.944 21 N -0.338 5.338 22 C -0.361 4.361 23 H 0.101 0.899 24 C -0.258 4.258 25 N -0.599 5.599 26 Si 0.804 3.196 27 H -0.204 1.204 28 H -0.224 1.224 29 H -0.200 1.200 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.050 0.950 34 H 0.067 0.933 35 H 0.251 0.749 36 H 0.138 0.862 37 H 0.133 0.867 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.097 0.903 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.091 0.909 45 H 0.070 0.930 46 H 0.115 0.885 47 H 0.071 0.929 48 H 0.121 0.879 49 H 0.107 0.893 50 H 0.088 0.912 51 H 0.081 0.919 52 H 0.092 0.908 53 H 0.058 0.942 54 H 0.009 0.991 55 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -25.872 10.678 -5.479 28.520 hybrid contribution 1.517 -0.883 0.719 1.897 sum -24.355 9.795 -4.759 26.679 Atomic orbital electron populations 1.21639 0.93643 1.01923 1.01801 1.21912 0.96662 0.97737 1.00379 1.21272 0.84331 0.94497 0.94733 0.92818 1.21564 0.84510 0.91967 0.96883 0.91055 1.45932 1.26163 1.51820 1.11770 1.21518 0.84933 0.80330 0.83623 1.90687 1.74135 1.56147 1.26035 1.21735 0.93672 1.00695 1.00902 1.21322 0.96869 1.00061 0.95687 1.21567 0.95903 1.00060 0.96605 1.21208 0.94995 0.98505 0.96203 1.22275 0.99133 1.00910 0.96605 1.22670 0.85587 0.97239 0.96557 1.87894 1.29365 1.45232 1.70173 1.22756 0.92459 0.96901 0.90261 1.22215 0.97047 1.01229 0.97875 1.23248 0.95865 0.98740 1.00220 1.21158 0.93868 0.92300 0.87090 1.44675 1.00644 1.68374 1.20057 1.19269 0.90356 1.34765 0.91746 0.89920 1.25745 0.98660 1.02068 0.99360 1.70138 1.10365 1.54454 1.24900 0.85191 0.77179 0.78609 0.78585 1.20387 1.22444 1.20001 0.92370 0.91220 0.93293 0.94951 0.93266 0.74903 0.86215 0.86725 0.92793 0.92844 0.90256 0.91072 0.91423 0.91388 0.90935 0.92983 0.88530 0.92866 0.87875 0.89335 0.91234 0.91889 0.90793 0.94158 0.99109 0.94406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.49 9.58 71.98 0.69 -2.80 16 2 C -0.13 -4.62 5.41 30.59 0.17 -4.45 16 3 C 0.16 6.07 2.94 45.34 0.13 6.20 16 4 H 0.05 1.89 7.70 -2.39 -0.02 1.87 16 5 C 0.16 5.47 1.97 46.18 0.09 5.57 16 6 H 0.07 2.83 7.25 -2.39 -0.02 2.81 16 7 N -0.71 -17.72 4.93 -436.92 -2.15 -19.87 16 8 C 0.51 12.82 7.83 87.65 0.69 13.51 16 9 O -0.59 -20.68 15.66 -3.04 -0.05 -20.73 16 10 C -0.13 -1.92 5.70 29.85 0.17 -1.75 16 11 C -0.10 -1.64 4.26 30.59 0.13 -1.51 16 12 C -0.10 -1.14 4.69 30.59 0.14 -0.99 16 13 C -0.09 -1.11 2.27 -10.67 -0.02 -1.13 16 14 C -0.15 -2.16 5.10 30.69 0.16 -2.00 16 15 C 0.06 0.83 6.84 72.02 0.49 1.32 16 16 O -0.41 -7.13 10.77 -148.98 -1.60 -8.73 16 17 C 0.05 0.63 6.84 72.01 0.49 1.12 16 18 C -0.15 -1.50 5.43 30.68 0.17 -1.34 16 19 C -0.14 -5.54 6.79 32.06 0.22 -5.32 16 20 C 0.18 9.15 5.42 86.92 0.47 9.62 16 21 N -0.61 -30.55 3.13 -667.83 -2.09 -32.64 16 22 C -0.23 -12.61 9.75 84.03 0.82 -11.79 16 23 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 24 C -0.07 -3.66 5.47 84.86 0.46 -3.20 16 25 N -0.95 -57.33 10.57 21.65 0.23 -57.10 16 26 Si 0.98 45.27 29.55 68.60 2.03 47.30 16 27 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 28 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 29 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 30 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 31 H 0.07 1.54 8.14 -2.38 -0.02 1.53 16 32 H 0.05 1.30 7.40 -2.39 -0.02 1.28 16 33 H 0.03 1.31 8.07 -2.39 -0.02 1.29 16 34 H 0.05 1.92 7.90 -2.38 -0.02 1.90 16 35 H 0.41 7.77 8.34 -92.71 -0.77 7.00 16 36 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.05 1.07 6.61 -2.39 -0.02 1.05 16 39 H 0.05 1.03 8.10 -2.38 -0.02 1.01 16 40 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.07 1.13 6.74 -2.39 -0.02 1.11 16 45 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 46 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 47 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 48 H 0.10 0.95 8.14 -2.39 -0.02 0.94 16 49 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 50 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 51 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 52 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 53 H 0.04 2.27 6.93 -2.39 -0.02 2.25 16 54 H -0.01 -0.52 8.06 -2.39 -0.02 -0.54 16 55 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 Total: -1.00 -71.70 421.73 1.89 -69.81 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: 0.06 Total: 20.91 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: 5.47 Total: 1.06 kcal Atomic # 7 Polarization: -105.60 SS G_CDS: -4.01 Total: -109.62 kcal Atomic # 8 Polarization: -27.81 SS G_CDS: -1.65 Total: -29.46 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -71.70 1.89 -69.81 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656714095.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.538 kcal (2) G-P(sol) polarization free energy of solvation -71.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds