Wall clock time and date at job start Tue Mar 31 2020 22:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46890 * 2 1 4 4 H 1.09004 * 109.99850 * 305.30459 * 3 2 1 5 5 C 1.54330 * 109.88123 * 184.21388 * 3 2 1 6 6 H 1.08997 * 110.71842 * 336.92885 * 5 3 2 7 7 N 1.46495 * 110.72124 * 100.02499 * 5 3 2 8 8 C 1.34780 * 120.00169 * 204.99931 * 7 5 3 9 9 O 1.21290 * 119.99522 * 359.97438 * 8 7 5 10 10 C 1.50698 * 120.00517 * 180.02562 * 8 7 5 11 11 C 1.52992 * 109.47388 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.47156 * 179.97438 * 11 10 8 13 13 H 1.09000 * 110.55317 * 303.57825 * 12 11 10 14 14 C 1.54995 * 110.61805 * 180.52688 * 12 11 10 15 15 C 1.54813 * 102.09329 * 204.47809 * 14 12 11 16 16 C 1.53002 * 110.48634 * 262.20253 * 15 14 12 17 17 C 1.52995 * 110.60298 * 139.61095 * 15 14 12 18 18 C 1.54103 * 104.18690 * 20.87752 * 15 14 12 19 19 O 1.43749 * 107.29097 * 2.03320 * 18 15 14 20 20 C 1.55152 * 102.93979 * 218.38923 * 5 3 2 21 21 C 1.54906 * 101.58536 * 35.49990 * 20 5 3 22 22 N 1.47019 * 109.88613 * 66.40170 * 3 2 1 23 23 C 1.36936 * 125.64947 * 298.38453 * 22 3 2 24 24 H 1.07998 * 119.99657 * 334.96760 * 23 22 3 25 25 C 1.38811 * 119.99955 * 154.97726 * 23 22 3 26 26 N 1.31628 * 119.99617 * 159.51999 * 25 23 22 27 27 Si 1.86796 * 120.00152 * 339.51810 * 25 23 22 28 28 H 1.48501 * 109.46870 * 84.73135 * 27 25 23 29 29 H 1.48495 * 109.47054 * 204.72565 * 27 25 23 30 30 H 1.48499 * 109.47250 * 324.73157 * 27 25 23 31 31 H 1.09001 * 109.47184 * 172.25454 * 1 2 3 32 32 H 1.09004 * 109.47254 * 292.25735 * 1 2 3 33 33 H 1.08995 * 109.47239 * 52.25489 * 1 2 3 34 34 H 1.09001 * 109.47007 * 240.00324 * 2 1 3 35 35 H 1.08995 * 109.47202 * 120.00107 * 2 1 3 36 36 H 0.96996 * 120.00394 * 25.00322 * 7 5 3 37 37 H 1.09002 * 109.46989 * 300.00425 * 10 8 7 38 38 H 1.08999 * 109.46726 * 59.99978 * 10 8 7 39 39 H 1.09002 * 109.47532 * 300.00251 * 11 10 8 40 40 H 1.09008 * 109.47127 * 60.00137 * 11 10 8 41 41 H 1.09000 * 110.91003 * 322.67215 * 14 12 11 42 42 H 1.09004 * 110.90980 * 86.27636 * 14 12 11 43 43 H 1.08998 * 109.47015 * 176.21870 * 16 15 14 44 44 H 1.09002 * 109.47305 * 296.22179 * 16 15 14 45 45 H 1.09009 * 109.47065 * 56.21817 * 16 15 14 46 46 H 1.08996 * 109.47348 * 303.71839 * 17 15 14 47 47 H 1.09008 * 109.47247 * 63.71265 * 17 15 14 48 48 H 1.09001 * 109.47258 * 183.71165 * 17 15 14 49 49 H 1.08993 * 109.87587 * 242.60734 * 18 15 14 50 50 H 1.09002 * 109.87293 * 121.45162 * 18 15 14 51 51 H 1.08998 * 111.00936 * 277.42602 * 20 5 3 52 52 H 1.09004 * 111.00869 * 153.57505 * 20 5 3 53 53 H 1.09003 * 110.37000 * 204.15072 * 21 20 5 54 54 H 1.09000 * 110.36855 * 81.82649 * 21 20 5 55 55 H 0.97001 * 119.99743 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6061 1.9913 -0.8359 5 6 3.5795 1.4549 -0.1066 6 1 3.9978 0.5106 0.2417 7 7 4.0016 1.7306 -1.4821 8 6 5.2059 1.3077 -1.9151 9 8 5.9403 0.6993 -1.1657 10 6 5.6404 1.5917 -3.3298 11 6 7.0358 1.0088 -3.5616 12 6 7.4766 1.2967 -4.9981 13 1 6.7500 0.9013 -5.7079 14 6 8.8840 0.7052 -5.2660 15 6 9.3939 1.5941 -6.4264 16 6 9.1776 0.8960 -7.7706 17 6 10.8728 1.9352 -6.2336 18 6 8.5303 2.8671 -6.3346 19 8 7.6634 2.7142 -5.1982 20 6 3.9836 2.6195 0.8355 21 6 2.9254 2.4919 1.9595 22 7 1.6848 2.0984 1.2669 23 6 0.4125 2.3085 1.7276 24 1 -0.4107 2.3697 1.0313 25 6 0.1810 2.4431 3.0897 26 7 -0.9174 3.0304 3.5156 27 14 1.4280 1.7908 4.3180 28 1 2.4869 2.8088 4.5362 29 1 0.7485 1.4996 5.6059 30 1 2.0398 0.5457 3.7885 31 1 -0.3633 -1.0183 -0.1385 32 1 -0.3634 0.3893 0.9511 33 1 -0.3633 0.6291 -0.8126 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 3.4144 2.2174 -2.0813 37 1 4.9355 1.1354 -4.0249 38 1 5.6654 2.6692 -3.4928 39 1 7.7404 1.4655 -2.8665 40 1 7.0112 -0.0687 -3.3984 41 1 9.5224 0.8072 -4.3885 42 1 8.8152 -0.3376 -5.5761 43 1 9.4797 1.5622 -8.5787 44 1 9.7756 -0.0146 -7.8076 45 1 8.1232 0.6431 -7.8832 46 1 11.0119 2.4136 -5.2641 47 1 11.4651 1.0210 -6.2758 48 1 11.1952 2.6137 -7.0233 49 1 7.9363 2.9781 -7.2417 50 1 9.1695 3.7394 -6.1985 51 1 3.8999 3.5802 0.3274 52 1 4.9900 2.4734 1.2280 53 1 2.7909 3.4486 2.4643 54 1 3.2212 1.7235 2.6736 55 1 -1.0794 3.1241 4.4674 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656756266.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:12 Heat of formation + Delta-G solvation = -102.538207 kcal Electronic energy + Delta-G solvation = -30252.422072 eV Core-core repulsion = 26288.157996 eV Total energy + Delta-G solvation = -3964.264076 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 2.89 seconds Orbital eigenvalues (eV) -41.20688 -40.76444 -39.49533 -35.77426 -35.58007 -34.43594 -34.17269 -33.85258 -31.33682 -30.11720 -28.61774 -28.22847 -26.92458 -26.34606 -25.09046 -23.86466 -22.47820 -21.84244 -21.55890 -20.81966 -20.15515 -18.90685 -18.07273 -17.54629 -17.39378 -16.96809 -16.49089 -16.37853 -16.04051 -15.82870 -15.32688 -15.05657 -14.85100 -14.72053 -14.56413 -14.46655 -14.26060 -14.06693 -13.86950 -13.85492 -13.67780 -13.45238 -13.06148 -12.99004 -12.92030 -12.65393 -12.61605 -12.38590 -12.36290 -12.19047 -12.06171 -12.01570 -11.99540 -11.68686 -11.59368 -11.55862 -11.52367 -11.37224 -11.31239 -10.79078 -10.68421 -10.50890 -9.98942 -8.96590 -8.14205 -5.42486 1.30253 1.38747 1.46236 1.70195 2.17225 2.43271 2.95487 3.08075 3.30597 3.48624 3.67251 3.71425 3.76834 3.86267 3.90867 4.00191 4.13089 4.16825 4.23046 4.34026 4.36558 4.40402 4.44070 4.49955 4.56002 4.61011 4.67214 4.74864 4.76816 4.78745 4.81735 4.83901 4.85096 4.92503 4.99688 5.00650 5.03072 5.08313 5.08558 5.15056 5.16059 5.19867 5.24257 5.29996 5.32738 5.39741 5.43201 5.61877 5.68574 5.81473 6.03701 6.17099 6.62340 6.79599 7.31943 7.57034 8.15204 9.05243 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.026983 B = 0.001996 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.424613 B =14024.910529 C =14343.769292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.120 4.120 3 C 0.155 3.845 4 H 0.060 0.940 5 C 0.147 3.853 6 H 0.083 0.917 7 N -0.707 5.707 8 C 0.512 3.488 9 O -0.586 6.586 10 C -0.127 4.127 11 C -0.093 4.093 12 C 0.079 3.921 13 H 0.086 0.914 14 C -0.143 4.143 15 C -0.100 4.100 16 C -0.136 4.136 17 C -0.137 4.137 18 C 0.049 3.951 19 O -0.395 6.395 20 C -0.128 4.128 21 C 0.109 3.891 22 N -0.614 5.614 23 C -0.203 4.203 24 H 0.073 0.927 25 C -0.032 4.032 26 N -0.954 5.954 27 Si 0.930 3.070 28 H -0.277 1.277 29 H -0.311 1.311 30 H -0.275 1.275 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.050 0.950 34 H 0.075 0.925 35 H 0.037 0.963 36 H 0.415 0.585 37 H 0.120 0.880 38 H 0.107 0.893 39 H 0.056 0.944 40 H 0.082 0.918 41 H 0.070 0.930 42 H 0.092 0.908 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.059 0.941 46 H 0.049 0.951 47 H 0.063 0.937 48 H 0.066 0.934 49 H 0.067 0.933 50 H 0.083 0.917 51 H 0.084 0.916 52 H 0.076 0.924 53 H 0.044 0.956 54 H 0.015 0.985 55 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.351 -4.230 -25.796 33.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.160 4.160 3 C 0.049 3.951 4 H 0.078 0.922 5 C 0.041 3.959 6 H 0.101 0.899 7 N -0.359 5.359 8 C 0.301 3.699 9 O -0.466 6.466 10 C -0.167 4.167 11 C -0.131 4.131 12 C 0.022 3.978 13 H 0.103 0.897 14 C -0.180 4.180 15 C -0.100 4.100 16 C -0.193 4.193 17 C -0.194 4.194 18 C -0.027 4.027 19 O -0.315 6.315 20 C -0.167 4.167 21 C -0.017 4.017 22 N -0.340 5.340 23 C -0.331 4.331 24 H 0.091 0.909 25 C -0.226 4.226 26 N -0.601 5.601 27 Si 0.761 3.239 28 H -0.204 1.204 29 H -0.240 1.240 30 H -0.201 1.201 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.056 0.944 36 H 0.252 0.748 37 H 0.138 0.862 38 H 0.125 0.875 39 H 0.075 0.925 40 H 0.100 0.900 41 H 0.088 0.912 42 H 0.111 0.889 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.078 0.922 46 H 0.069 0.931 47 H 0.082 0.918 48 H 0.085 0.915 49 H 0.085 0.915 50 H 0.101 0.899 51 H 0.103 0.897 52 H 0.095 0.905 53 H 0.063 0.937 54 H 0.032 0.968 55 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 21.608 -4.428 -25.007 33.345 hybrid contribution -0.093 -0.091 1.204 1.211 sum 21.515 -4.519 -23.803 32.402 Atomic orbital electron populations 1.21812 0.95817 1.00439 1.02363 1.21845 0.96688 0.96884 1.00548 1.21375 0.91714 0.92715 0.89313 0.92208 1.21706 0.93704 0.98132 0.82390 0.89883 1.45901 1.18900 1.58182 1.12870 1.21351 0.80471 0.77286 0.90807 1.90684 1.54102 1.42839 1.58986 1.21631 0.98774 1.04728 0.91569 1.21315 0.95309 1.01646 0.94806 1.23218 0.97018 0.81223 0.96375 0.89663 1.23303 0.95869 1.00492 0.98348 1.21957 0.96621 0.95015 0.96422 1.21863 1.02137 1.00610 0.94737 1.21839 0.93758 1.02011 1.01782 1.23441 0.92011 0.98125 0.89154 1.88864 1.68488 1.24346 1.49829 1.23028 0.97878 0.99476 0.96339 1.21949 0.87082 0.97374 0.95253 1.44870 1.01056 1.66867 1.21192 1.18464 0.83965 1.40081 0.90631 0.90921 1.25617 0.97650 1.00970 0.98410 1.69914 1.29281 1.46311 1.14568 0.86136 0.79213 0.79784 0.78779 1.20353 1.24006 1.20086 0.92897 0.93037 0.93116 0.90666 0.94396 0.74757 0.86187 0.87466 0.92533 0.89960 0.91155 0.88909 0.91627 0.91675 0.92230 0.93145 0.91800 0.91532 0.91489 0.89884 0.89699 0.90522 0.93725 0.96754 0.93122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.36 9.01 71.98 0.65 -4.71 16 2 C -0.12 -4.17 5.46 30.59 0.17 -4.01 16 3 C 0.15 5.54 2.99 45.34 0.14 5.68 16 4 H 0.06 2.01 7.72 -2.39 -0.02 1.99 16 5 C 0.15 4.64 2.85 46.18 0.13 4.77 16 6 H 0.08 2.91 7.25 -2.39 -0.02 2.90 16 7 N -0.71 -16.86 5.18 -436.92 -2.26 -19.12 16 8 C 0.51 12.62 7.83 87.66 0.69 13.30 16 9 O -0.59 -19.48 15.63 -3.06 -0.05 -19.52 16 10 C -0.13 -2.10 5.62 29.84 0.17 -1.93 16 11 C -0.09 -1.62 4.28 30.59 0.13 -1.49 16 12 C 0.08 1.11 3.33 31.28 0.10 1.21 16 13 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 14 C -0.14 -1.71 5.70 31.90 0.18 -1.53 16 15 C -0.10 -1.01 0.99 -51.19 -0.05 -1.06 16 16 C -0.14 -0.98 8.25 71.98 0.59 -0.39 16 17 C -0.14 -1.26 8.27 71.98 0.60 -0.67 16 18 C 0.05 0.62 7.04 72.36 0.51 1.13 16 19 O -0.40 -7.00 10.89 -148.98 -1.62 -8.63 16 20 C -0.13 -4.31 6.77 31.98 0.22 -4.09 16 21 C 0.11 4.64 4.74 86.85 0.41 5.05 16 22 N -0.61 -27.96 2.85 -668.25 -1.91 -29.86 16 23 C -0.20 -10.98 7.86 84.03 0.66 -10.32 16 24 H 0.07 4.20 7.27 -2.91 -0.02 4.18 16 25 C -0.03 -1.85 5.44 84.86 0.46 -1.39 16 26 N -0.95 -59.25 13.97 21.65 0.30 -58.94 16 27 Si 0.93 47.61 24.35 68.60 1.67 49.28 16 28 H -0.28 -13.61 6.73 99.48 0.67 -12.94 16 29 H -0.31 -16.22 7.11 99.48 0.71 -15.51 16 30 H -0.28 -13.87 6.79 99.48 0.68 -13.19 16 31 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.05 2.32 5.47 -2.38 -0.01 2.31 16 33 H 0.05 1.73 8.13 -2.39 -0.02 1.71 16 34 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.42 7.57 8.37 -92.71 -0.78 6.79 16 37 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.11 1.67 7.92 -2.39 -0.02 1.65 16 39 H 0.06 1.24 8.10 -2.39 -0.02 1.22 16 40 H 0.08 1.45 8.10 -2.38 -0.02 1.43 16 41 H 0.07 0.99 7.79 -2.39 -0.02 0.97 16 42 H 0.09 0.88 7.86 -2.38 -0.02 0.86 16 43 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 44 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 45 H 0.06 0.42 8.14 -2.38 -0.02 0.40 16 46 H 0.05 0.56 8.13 -2.39 -0.02 0.54 16 47 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 48 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 49 H 0.07 0.72 7.69 -2.39 -0.02 0.70 16 50 H 0.08 1.01 7.69 -2.39 -0.02 0.99 16 51 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 52 H 0.08 2.48 8.14 -2.38 -0.02 2.46 16 53 H 0.04 2.03 7.28 -2.39 -0.02 2.02 16 54 H 0.01 0.67 5.44 -2.39 -0.01 0.65 16 55 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -70.37 416.16 1.89 -68.49 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: 0.00 Total: 18.74 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: 5.75 Total: -0.43 kcal Atomic # 7 Polarization: -104.07 SS G_CDS: -3.87 Total: -107.93 kcal Atomic # 8 Polarization: -26.48 SS G_CDS: -1.67 Total: -28.15 kcal Atomic # 14 Polarization: 47.61 SS G_CDS: 1.67 Total: 49.28 kcal Total: -70.37 1.89 -68.49 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656756266.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.053 kcal (2) G-P(sol) polarization free energy of solvation -70.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.89 seconds