Wall clock time and date at job start Tue Mar 31 2020 22:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47132 * 2 1 4 4 H 1.08999 * 109.99793 * 306.93421 * 3 2 1 5 5 C 1.54326 * 109.88146 * 185.83889 * 3 2 1 6 6 H 1.08995 * 110.72172 * 336.93077 * 5 3 2 7 7 N 1.46496 * 110.71909 * 100.02736 * 5 3 2 8 8 C 1.34779 * 120.00190 * 202.55959 * 7 5 3 9 9 O 1.21287 * 119.99431 * 359.97438 * 8 7 5 10 10 C 1.50700 * 120.00265 * 179.97438 * 8 7 5 11 11 C 1.53002 * 109.47138 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47169 * 180.02562 * 11 10 8 13 13 H 1.09003 * 110.27054 * 52.90682 * 12 11 10 14 14 C 1.54943 * 110.30863 * 174.99760 * 12 11 10 15 15 C 1.55306 * 100.98155 * 155.43701 * 14 12 11 16 16 C 1.53006 * 110.84617 * 84.07560 * 15 14 12 17 17 C 1.52997 * 110.85090 * 207.69512 * 15 14 12 18 18 C 1.54437 * 102.22678 * 325.92262 * 15 14 12 19 19 O 1.43241 * 107.60827 * 21.29349 * 18 15 14 20 20 C 1.55153 * 103.10270 * 218.47846 * 5 3 2 21 21 C 1.54908 * 101.58525 * 35.40908 * 20 5 3 22 22 N 1.47317 * 110.06615 * 68.10943 * 3 2 1 23 23 C 1.36941 * 125.61293 * 298.31691 * 22 3 2 24 24 H 1.07997 * 120.00267 * 334.76389 * 23 22 3 25 25 C 1.38819 * 119.99724 * 154.75699 * 23 22 3 26 26 N 1.31620 * 119.99707 * 159.46456 * 25 23 22 27 27 Si 1.86791 * 120.00102 * 339.46249 * 25 23 22 28 28 H 1.48496 * 109.47309 * 85.02032 * 27 25 23 29 29 H 1.48503 * 109.47135 * 205.02089 * 27 25 23 30 30 H 1.48507 * 109.47155 * 325.01880 * 27 25 23 31 31 H 1.09004 * 109.47422 * 292.17724 * 1 2 3 32 32 H 1.09004 * 109.47348 * 52.17501 * 1 2 3 33 33 H 1.08997 * 109.47367 * 172.17062 * 1 2 3 34 34 H 1.09002 * 109.47317 * 239.99849 * 2 1 3 35 35 H 1.08996 * 109.46952 * 120.00017 * 2 1 3 36 36 H 0.97006 * 120.00641 * 22.55644 * 7 5 3 37 37 H 1.08998 * 109.47150 * 60.00114 * 10 8 7 38 38 H 1.09003 * 109.46910 * 300.00153 * 10 8 7 39 39 H 1.08998 * 109.47142 * 59.99944 * 11 10 8 40 40 H 1.09007 * 109.46749 * 299.99820 * 11 10 8 41 41 H 1.08998 * 111.12644 * 273.37523 * 14 12 11 42 42 H 1.09001 * 111.12542 * 37.49817 * 14 12 11 43 43 H 1.09003 * 109.47242 * 60.00269 * 16 15 14 44 44 H 1.09004 * 109.46938 * 180.02562 * 16 15 14 45 45 H 1.08999 * 109.47351 * 300.00128 * 16 15 14 46 46 H 1.09000 * 109.46843 * 60.00024 * 17 15 14 47 47 H 1.08996 * 109.47295 * 180.02562 * 17 15 14 48 48 H 1.08994 * 109.47109 * 300.00324 * 17 15 14 49 49 H 1.08999 * 109.78622 * 261.79265 * 18 15 14 50 50 H 1.09000 * 109.93067 * 140.87311 * 18 15 14 51 51 H 1.09000 * 111.00710 * 153.49270 * 20 5 3 52 52 H 1.09001 * 111.00372 * 277.30166 * 20 5 3 53 53 H 1.09005 * 110.36036 * 81.82536 * 21 20 5 54 54 H 1.08996 * 110.37145 * 204.03967 * 21 20 5 55 55 H 0.97000 * 119.99840 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5840 1.9991 -0.8187 5 6 3.5761 1.4560 -0.1476 6 1 4.0034 0.5085 0.1804 7 7 3.9613 1.7448 -1.5313 8 6 5.1733 1.3693 -1.9858 9 8 5.9452 0.7928 -1.2490 10 6 5.5693 1.6658 -3.4093 11 6 6.9821 1.1377 -3.6661 12 6 7.3844 1.4393 -5.1112 13 1 7.2477 2.4988 -5.3279 14 6 8.8573 1.0258 -5.3568 15 6 8.8480 0.7967 -6.8929 16 6 9.0503 2.1158 -7.6413 17 6 9.9092 -0.2287 -7.2970 18 6 7.4268 0.2418 -7.1322 19 8 6.6134 0.6404 -6.0225 20 6 4.0099 2.6095 0.7950 21 6 2.9824 2.4735 1.9463 22 7 1.7221 2.0910 1.2840 23 6 0.4635 2.3000 1.7817 24 1 -0.3783 2.3712 1.1090 25 6 0.2699 2.4202 3.1510 26 7 -0.8137 3.0071 3.6134 27 14 1.5470 1.7490 4.3374 28 1 2.6125 2.7627 4.5434 29 1 0.9003 1.4394 5.6379 30 1 2.1436 0.5111 3.7742 31 1 -0.3634 0.3879 0.9517 32 1 -0.3634 0.6302 -0.8118 33 1 -0.3634 -1.0180 -0.1400 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.3440 2.2062 -2.1204 37 1 5.5478 2.7428 -3.5755 38 1 4.8705 1.1791 -4.0897 39 1 7.0032 0.0607 -3.5000 40 1 7.6811 1.6242 -2.9857 41 1 9.5417 1.8289 -5.0836 42 1 9.1014 0.1067 -4.8240 43 1 10.0082 2.5515 -7.3573 44 1 9.0395 1.9295 -8.7153 45 1 8.2467 2.8061 -7.3846 46 1 9.7061 -1.1770 -6.7995 47 1 9.8835 -0.3717 -8.3772 48 1 10.8944 0.1326 -7.0020 49 1 7.4609 -0.8459 -7.1939 50 1 7.0185 0.6518 -8.0559 51 1 5.0261 2.4562 1.1581 52 1 3.9161 3.5756 0.2991 53 1 3.2951 1.6967 2.6440 54 1 2.8665 3.4247 2.4657 55 1 -0.9492 3.0908 4.5702 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656756267.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:17 Heat of formation + Delta-G solvation = -102.955765 kcal Electronic energy + Delta-G solvation = -30264.228254 eV Core-core repulsion = 26299.946071 eV Total energy + Delta-G solvation = -3964.282183 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.21496 -40.78289 -39.47358 -35.73831 -35.56174 -34.44903 -34.18907 -33.84976 -31.33542 -30.11700 -28.62134 -28.24941 -27.05994 -26.32955 -25.04226 -23.86592 -22.45914 -21.83839 -21.55830 -20.82542 -20.15272 -18.89823 -18.06102 -17.64102 -17.40681 -16.96827 -16.47442 -16.36661 -16.13052 -15.60267 -15.34576 -15.07601 -14.89594 -14.84927 -14.67557 -14.39312 -14.10798 -14.06896 -13.91436 -13.85085 -13.61166 -13.44991 -13.06911 -13.03244 -12.93119 -12.69702 -12.61833 -12.48097 -12.35683 -12.22682 -12.06766 -12.02346 -11.98921 -11.68315 -11.63080 -11.59557 -11.54400 -11.32218 -11.28354 -10.78650 -10.68960 -10.39562 -9.99361 -8.96852 -8.14365 -5.42782 1.30000 1.38760 1.46257 1.70475 2.17318 2.43113 2.89627 3.08211 3.29623 3.42622 3.66673 3.70665 3.76839 3.86886 3.87236 4.03834 4.12707 4.16869 4.23038 4.33242 4.33683 4.39845 4.43393 4.49630 4.56644 4.59494 4.66135 4.74160 4.77442 4.78578 4.84715 4.85166 4.87432 4.92931 4.98562 5.00127 5.01634 5.07151 5.08103 5.14873 5.16329 5.18929 5.21692 5.29894 5.33290 5.38911 5.45308 5.61457 5.66184 5.80836 6.14834 6.16938 6.62454 6.79282 7.32105 7.56840 8.14971 9.05150 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.027693 B = 0.002001 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.831058 B =13986.886396 C =14380.327126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.121 4.121 3 C 0.155 3.845 4 H 0.061 0.939 5 C 0.147 3.853 6 H 0.080 0.920 7 N -0.707 5.707 8 C 0.512 3.488 9 O -0.586 6.586 10 C -0.127 4.127 11 C -0.098 4.098 12 C 0.083 3.917 13 H 0.085 0.915 14 C -0.143 4.143 15 C -0.098 4.098 16 C -0.137 4.137 17 C -0.135 4.135 18 C 0.053 3.947 19 O -0.399 6.399 20 C -0.126 4.126 21 C 0.109 3.891 22 N -0.614 5.614 23 C -0.204 4.204 24 H 0.073 0.927 25 C -0.031 4.031 26 N -0.953 5.953 27 Si 0.931 3.069 28 H -0.276 1.276 29 H -0.311 1.311 30 H -0.276 1.276 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.052 0.948 34 H 0.073 0.927 35 H 0.037 0.963 36 H 0.415 0.585 37 H 0.119 0.881 38 H 0.108 0.892 39 H 0.055 0.945 40 H 0.080 0.920 41 H 0.095 0.905 42 H 0.073 0.927 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.055 0.945 46 H 0.054 0.946 47 H 0.066 0.934 48 H 0.065 0.935 49 H 0.066 0.934 50 H 0.074 0.926 51 H 0.077 0.923 52 H 0.086 0.914 53 H 0.014 0.986 54 H 0.045 0.955 55 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.577 -2.642 -25.787 33.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.161 4.161 3 C 0.049 3.951 4 H 0.079 0.921 5 C 0.041 3.959 6 H 0.098 0.902 7 N -0.359 5.359 8 C 0.301 3.699 9 O -0.466 6.466 10 C -0.167 4.167 11 C -0.136 4.136 12 C 0.026 3.974 13 H 0.102 0.898 14 C -0.181 4.181 15 C -0.099 4.099 16 C -0.194 4.194 17 C -0.192 4.192 18 C -0.023 4.023 19 O -0.319 6.319 20 C -0.165 4.165 21 C -0.017 4.017 22 N -0.340 5.340 23 C -0.332 4.332 24 H 0.090 0.910 25 C -0.226 4.226 26 N -0.600 5.600 27 Si 0.761 3.239 28 H -0.202 1.202 29 H -0.240 1.240 30 H -0.202 1.202 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.056 0.944 36 H 0.252 0.748 37 H 0.137 0.863 38 H 0.126 0.874 39 H 0.074 0.926 40 H 0.098 0.902 41 H 0.114 0.886 42 H 0.092 0.908 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.074 0.926 46 H 0.073 0.927 47 H 0.085 0.915 48 H 0.084 0.916 49 H 0.084 0.916 50 H 0.092 0.908 51 H 0.096 0.904 52 H 0.104 0.896 53 H 0.031 0.969 54 H 0.064 0.936 55 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 21.739 -3.044 -25.101 33.346 hybrid contribution -0.107 -0.237 1.213 1.241 sum 21.632 -3.281 -23.888 32.393 Atomic orbital electron populations 1.21794 0.95740 1.00528 1.02301 1.21848 0.96755 0.96968 1.00485 1.21423 0.91920 0.92723 0.89047 0.92122 1.21695 0.93955 0.98104 0.82187 0.90209 1.45913 1.17513 1.60075 1.12387 1.21357 0.80717 0.77090 0.90774 1.90681 1.52273 1.43523 1.60128 1.21644 0.99101 1.04944 0.91013 1.21429 0.95660 1.01681 0.94788 1.23044 0.90201 0.95445 0.88716 0.89771 1.23418 0.96420 1.02952 0.95291 1.22134 0.95204 0.97377 0.95138 1.21823 1.02316 0.95012 1.00240 1.21746 0.97967 0.97565 1.01964 1.23383 0.89869 0.99467 0.89596 1.88388 1.37567 1.71239 1.34751 1.23016 0.98029 0.99478 0.95994 1.21944 0.86839 0.97412 0.95456 1.44946 1.01113 1.67442 1.20485 1.18471 0.84349 1.40146 0.90282 0.90979 1.25627 0.97805 1.00939 0.98242 1.69911 1.30326 1.46355 1.13456 0.86133 0.79440 0.79826 0.78501 1.20249 1.24006 1.20167 0.93119 0.92989 0.92868 0.90818 0.94408 0.74758 0.86316 0.87385 0.92576 0.90175 0.88642 0.90825 0.91454 0.91541 0.92575 0.92693 0.91478 0.91567 0.91555 0.90815 0.90436 0.89551 0.96856 0.93630 0.93109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.37 9.11 71.98 0.66 -4.71 16 2 C -0.12 -4.27 5.45 30.59 0.17 -4.11 16 3 C 0.15 5.58 2.98 45.28 0.14 5.71 16 4 H 0.06 2.05 7.68 -2.39 -0.02 2.04 16 5 C 0.15 4.65 2.79 46.18 0.13 4.78 16 6 H 0.08 2.83 7.33 -2.39 -0.02 2.81 16 7 N -0.71 -16.95 5.19 -436.92 -2.27 -19.22 16 8 C 0.51 12.68 7.83 87.66 0.69 13.37 16 9 O -0.59 -19.55 15.67 -3.05 -0.05 -19.59 16 10 C -0.13 -2.12 5.63 29.85 0.17 -1.95 16 11 C -0.10 -1.72 4.24 30.59 0.13 -1.59 16 12 C 0.08 1.18 3.11 31.26 0.10 1.27 16 13 H 0.08 0.99 7.85 -2.39 -0.02 0.97 16 14 C -0.14 -1.67 5.53 32.05 0.18 -1.49 16 15 C -0.10 -0.97 0.95 -50.90 -0.05 -1.02 16 16 C -0.14 -1.05 8.43 71.98 0.61 -0.45 16 17 C -0.14 -1.09 8.54 71.98 0.61 -0.48 16 18 C 0.05 0.70 6.99 72.47 0.51 1.21 16 19 O -0.40 -7.09 10.81 -148.98 -1.61 -8.70 16 20 C -0.13 -4.18 6.77 31.98 0.22 -3.97 16 21 C 0.11 4.62 4.75 86.86 0.41 5.03 16 22 N -0.61 -27.97 2.86 -667.57 -1.91 -29.89 16 23 C -0.20 -11.05 7.99 84.03 0.67 -10.38 16 24 H 0.07 4.18 7.28 -2.91 -0.02 4.16 16 25 C -0.03 -1.82 5.44 84.86 0.46 -1.36 16 26 N -0.95 -59.22 13.97 21.65 0.30 -58.91 16 27 Si 0.93 47.58 24.36 68.60 1.67 49.25 16 28 H -0.28 -13.50 6.74 99.48 0.67 -12.83 16 29 H -0.31 -16.21 7.11 99.48 0.71 -15.50 16 30 H -0.28 -13.94 6.78 99.48 0.67 -13.26 16 31 H 0.05 2.29 5.53 -2.38 -0.01 2.27 16 32 H 0.05 1.77 8.12 -2.38 -0.02 1.75 16 33 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.42 7.61 8.34 -92.70 -0.77 6.84 16 37 H 0.12 1.36 8.14 -2.39 -0.02 1.35 16 38 H 0.11 1.67 7.99 -2.39 -0.02 1.65 16 39 H 0.06 1.23 8.10 -2.39 -0.02 1.21 16 40 H 0.08 1.44 8.10 -2.38 -0.02 1.42 16 41 H 0.10 0.87 8.03 -2.39 -0.02 0.85 16 42 H 0.07 0.98 7.96 -2.39 -0.02 0.96 16 43 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 44 H 0.07 0.43 8.14 -2.38 -0.02 0.41 16 45 H 0.06 0.48 7.64 -2.39 -0.02 0.46 16 46 H 0.05 0.50 8.06 -2.39 -0.02 0.48 16 47 H 0.07 0.43 8.14 -2.39 -0.02 0.42 16 48 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 49 H 0.07 0.87 7.75 -2.39 -0.02 0.85 16 50 H 0.07 0.84 7.85 -2.39 -0.02 0.82 16 51 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 52 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 53 H 0.01 0.62 5.44 -2.38 -0.01 0.61 16 54 H 0.05 2.06 7.29 -2.39 -0.02 2.04 16 55 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -70.38 416.11 1.93 -68.45 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: 0.00 Total: 18.74 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: 5.79 Total: -0.13 kcal Atomic # 7 Polarization: -104.14 SS G_CDS: -3.88 Total: -108.02 kcal Atomic # 8 Polarization: -26.64 SS G_CDS: -1.66 Total: -28.30 kcal Atomic # 14 Polarization: 47.58 SS G_CDS: 1.67 Total: 49.25 kcal Total: -70.38 1.93 -68.45 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656756267.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.503 kcal (2) G-P(sol) polarization free energy of solvation -70.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds