Wall clock time and date at job start Tue Mar 31 2020 22:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47425 * 2 1 4 4 H 1.09005 * 109.49816 * 55.06413 * 3 2 1 5 5 C 1.53191 * 109.49762 * 294.99847 * 3 2 1 6 6 N 1.46928 * 108.77597 * 185.40992 * 5 3 2 7 7 C 1.34779 * 120.62974 * 233.58183 * 6 5 3 8 8 O 1.21273 * 120.00087 * 5.39015 * 7 6 5 9 9 C 1.50697 * 119.99511 * 185.38243 * 7 6 5 10 10 C 1.53001 * 112.91069 * 284.10508 * 9 7 6 11 11 C 1.52993 * 109.47104 * 316.02899 * 10 9 7 12 12 O 1.42908 * 109.47188 * 175.09732 * 11 10 9 13 13 C 1.42901 * 113.99931 * 180.02562 * 12 11 10 14 14 C 1.53783 * 113.61448 * 55.36216 * 9 7 6 15 15 C 1.53778 * 87.08173 * 89.11345 * 14 9 7 16 16 C 1.53773 * 87.08303 * 25.43177 * 15 14 9 17 17 C 1.46930 * 118.73598 * 53.86359 * 6 5 3 18 18 C 1.53624 * 108.53950 * 306.09119 * 17 6 5 19 19 C 1.53038 * 109.49877 * 175.15720 * 3 2 1 20 20 H 1.08996 * 109.46069 * 301.33632 * 19 3 2 21 21 N 1.46502 * 109.45727 * 61.30066 * 19 3 2 22 22 C 1.36939 * 119.99776 * 204.99696 * 21 19 3 23 23 H 1.08006 * 119.99916 * 359.97438 * 22 21 19 24 24 C 1.38814 * 120.00104 * 179.97438 * 22 21 19 25 25 N 1.31615 * 119.99493 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99896 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47265 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.47076 * 120.00074 * 26 24 22 29 29 H 1.48501 * 109.46499 * 239.99738 * 26 24 22 30 30 H 1.09006 * 109.46782 * 59.99613 * 1 2 3 31 31 H 1.08997 * 109.47610 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47277 * 300.00526 * 1 2 3 33 33 H 1.09003 * 109.47138 * 239.99703 * 2 1 3 34 34 H 1.08998 * 109.46947 * 119.99747 * 2 1 3 35 35 H 1.09006 * 109.58580 * 65.62404 * 5 3 2 36 36 H 1.08992 * 109.58894 * 305.19868 * 5 3 2 37 37 H 1.09003 * 109.47120 * 76.03085 * 10 9 7 38 38 H 1.09004 * 109.47130 * 196.02930 * 10 9 7 39 39 H 1.09000 * 109.47450 * 295.09420 * 11 10 9 40 40 H 1.09003 * 109.47357 * 55.10049 * 11 10 9 41 41 H 1.08999 * 109.47124 * 299.99819 * 13 12 11 42 42 H 1.09006 * 109.47258 * 60.00106 * 13 12 11 43 43 H 1.08998 * 109.46532 * 179.97438 * 13 12 11 44 44 H 1.08994 * 113.61411 * 334.55948 * 14 9 7 45 45 H 1.09008 * 113.61405 * 203.66355 * 14 9 7 46 46 H 1.08999 * 113.61244 * 139.98336 * 15 14 9 47 47 H 1.09003 * 113.61011 * 270.88520 * 15 14 9 48 48 H 1.08999 * 113.61437 * 89.11747 * 16 15 14 49 49 H 1.09002 * 113.61822 * 220.01955 * 16 15 14 50 50 H 1.08993 * 109.58713 * 65.92644 * 17 6 5 51 51 H 1.08997 * 109.58395 * 186.34980 * 17 6 5 52 52 H 1.09004 * 109.63531 * 294.86218 * 18 17 6 53 53 H 1.09006 * 109.45565 * 174.74391 * 18 17 6 54 54 H 0.96992 * 120.00255 * 24.99338 * 21 19 3 55 55 H 0.97005 * 119.99545 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6066 1.9816 0.8424 5 6 1.6352 2.1280 -1.3088 6 7 2.2416 3.4656 -1.3493 7 6 1.4817 4.5579 -1.5638 8 8 0.2752 4.4541 -1.6282 9 6 2.1315 5.9082 -1.7236 10 6 2.6078 6.5008 -0.3958 11 6 1.5273 6.3010 0.6687 12 8 2.0161 6.7510 1.9339 13 6 1.0792 6.6073 3.0034 14 6 3.1937 5.9531 -2.8347 15 6 2.0558 6.3273 -3.7990 16 6 1.3108 6.8895 -2.5770 17 6 3.6931 3.5892 -1.1578 18 6 4.0741 2.8879 0.1549 19 6 3.5656 1.4448 0.1218 20 1 3.8573 0.9358 1.0404 21 7 4.1480 0.7484 -1.0280 22 6 5.3861 0.1726 -0.9244 23 1 5.9334 0.2322 0.0048 24 6 5.9378 -0.4878 -2.0137 25 7 5.2711 -0.5600 -3.1461 26 14 7.6265 -1.2739 -1.8721 27 1 8.1624 -1.0527 -0.5049 28 1 7.5170 -2.7319 -2.1316 29 1 8.5425 -0.6613 -2.8675 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 0.5497 2.2173 -1.3539 36 1 1.9909 1.5397 -2.1546 37 1 3.5238 5.9999 -0.0823 38 1 2.8012 7.5661 -0.5220 39 1 0.6400 6.8733 0.3977 40 1 1.2718 5.2433 0.7332 41 1 0.1825 7.1856 2.7810 42 1 0.8149 5.5559 3.1162 43 1 1.5260 6.9706 3.9289 44 1 3.6449 4.9839 -3.0468 45 1 3.9315 6.7445 -2.7017 46 1 2.3342 7.0877 -4.5287 47 1 1.5652 5.4651 -4.2508 48 1 1.5337 7.9369 -2.3736 49 1 0.2419 6.6763 -2.5811 50 1 4.2132 3.1177 -1.9915 51 1 3.9660 4.6431 -1.1032 52 1 3.6220 3.4138 0.9958 53 1 5.1585 2.8891 0.2657 54 1 3.6567 0.6951 -1.8626 55 1 5.6565 -1.0217 -3.9072 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670594859.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:02 Heat of formation + Delta-G solvation = -74.254469 kcal Electronic energy + Delta-G solvation = -32768.680144 eV Core-core repulsion = 28805.642543 eV Total energy + Delta-G solvation = -3963.037601 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 2.62 seconds Orbital eigenvalues (eV) -42.26443 -40.01039 -38.75752 -38.20934 -35.89729 -35.34102 -33.39602 -32.87417 -30.99828 -30.11498 -28.00089 -26.94330 -26.67174 -25.71881 -25.32717 -24.96260 -23.24537 -22.24818 -21.82345 -20.23187 -19.26680 -19.24490 -17.64724 -17.58379 -17.19254 -16.89383 -16.68836 -16.33239 -15.98248 -15.89120 -15.55072 -15.51588 -15.34230 -14.84033 -14.66218 -14.53964 -14.32420 -14.08315 -13.96221 -13.65100 -13.40376 -13.27305 -13.01247 -12.89966 -12.87691 -12.71241 -12.65815 -12.39251 -12.24627 -12.16871 -12.04697 -11.99303 -11.88040 -11.77852 -11.58833 -11.46744 -11.28597 -11.17750 -11.10646 -10.87471 -10.68581 -10.56413 -9.58609 -8.90821 -7.87475 -5.13427 1.49229 1.51091 1.56822 1.59234 1.99217 2.60619 2.71729 3.34000 3.46501 3.48586 3.59168 3.79709 3.83882 3.87925 3.98616 4.01242 4.07269 4.10616 4.21536 4.27619 4.33953 4.40997 4.43093 4.46702 4.49152 4.53153 4.55873 4.59640 4.66753 4.80317 4.80955 4.82211 4.83797 4.85761 4.93444 4.97670 5.02666 5.04534 5.06464 5.12617 5.15194 5.21439 5.22083 5.24637 5.31538 5.38419 5.45434 5.50721 5.61505 5.66300 6.15497 6.34156 6.46951 7.13680 7.42111 8.17419 8.41886 9.35880 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010913 B = 0.003904 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.074699 B = 7169.602176 C = 7695.175004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.105 4.105 3 C -0.090 4.090 4 H 0.079 0.921 5 C 0.124 3.876 6 N -0.597 5.597 7 C 0.537 3.463 8 O -0.582 6.582 9 C -0.105 4.105 10 C -0.093 4.093 11 C 0.066 3.934 12 O -0.405 6.405 13 C 0.026 3.974 14 C -0.127 4.127 15 C -0.142 4.142 16 C -0.110 4.110 17 C 0.119 3.881 18 C -0.142 4.142 19 C 0.173 3.827 20 H 0.045 0.955 21 N -0.722 5.722 22 C -0.224 4.224 23 H 0.074 0.926 24 C -0.070 4.070 25 N -0.968 5.968 26 Si 0.961 3.039 27 H -0.268 1.268 28 H -0.301 1.301 29 H -0.298 1.298 30 H 0.048 0.952 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.045 0.955 34 H 0.062 0.938 35 H 0.083 0.917 36 H 0.048 0.952 37 H 0.081 0.919 38 H 0.107 0.893 39 H 0.053 0.947 40 H 0.027 0.973 41 H 0.049 0.951 42 H 0.037 0.963 43 H 0.103 0.897 44 H 0.062 0.938 45 H 0.122 0.878 46 H 0.095 0.905 47 H 0.054 0.946 48 H 0.119 0.881 49 H 0.061 0.939 50 H 0.053 0.947 51 H 0.105 0.895 52 H 0.068 0.932 53 H 0.067 0.933 54 H 0.373 0.627 55 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.895 16.845 7.302 19.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.143 4.143 3 C -0.110 4.110 4 H 0.097 0.903 5 C 0.002 3.998 6 N -0.328 5.328 7 C 0.326 3.674 8 O -0.462 6.462 9 C -0.109 4.109 10 C -0.130 4.130 11 C -0.011 4.011 12 O -0.325 6.325 13 C -0.070 4.070 14 C -0.165 4.165 15 C -0.179 4.179 16 C -0.147 4.147 17 C -0.003 4.003 18 C -0.182 4.182 19 C 0.065 3.935 20 H 0.063 0.937 21 N -0.363 5.363 22 C -0.356 4.356 23 H 0.092 0.908 24 C -0.262 4.262 25 N -0.619 5.619 26 Si 0.792 3.208 27 H -0.192 1.192 28 H -0.229 1.229 29 H -0.225 1.225 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.101 0.899 36 H 0.066 0.934 37 H 0.099 0.901 38 H 0.125 0.875 39 H 0.071 0.929 40 H 0.045 0.955 41 H 0.068 0.932 42 H 0.056 0.944 43 H 0.122 0.878 44 H 0.080 0.920 45 H 0.141 0.859 46 H 0.113 0.887 47 H 0.073 0.927 48 H 0.137 0.863 49 H 0.080 0.920 50 H 0.071 0.929 51 H 0.123 0.877 52 H 0.087 0.913 53 H 0.086 0.914 54 H 0.207 0.793 55 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -8.172 16.789 7.391 20.081 hybrid contribution 0.485 -1.404 -0.593 1.600 sum -7.687 15.384 6.798 18.492 Atomic orbital electron populations 1.21775 0.94788 1.01937 1.01741 1.21341 0.96035 0.95182 1.01789 1.21622 0.95874 0.96394 0.97073 0.90306 1.21504 0.98480 0.82246 0.97620 1.48098 1.08842 1.06143 1.69698 1.20435 0.86377 0.85958 0.74622 1.90618 1.15572 1.86674 1.53375 1.21943 0.99833 0.92345 0.96732 1.21532 0.98063 1.03353 0.90082 1.22481 0.97264 0.97381 0.83935 1.87810 1.42078 1.85105 1.17479 1.22908 0.93325 1.00535 0.90261 1.23239 0.96447 1.03371 0.93404 1.22802 0.96981 1.00981 0.97182 1.22950 0.98980 0.98896 0.93889 1.21933 0.78573 1.01729 0.98042 1.22470 1.01360 0.97739 0.96659 1.20413 0.90972 0.91438 0.90703 0.93676 1.42558 1.18207 1.64260 1.11313 1.19586 0.94206 1.25113 0.96743 0.90788 1.25335 1.01638 1.03179 0.96082 1.69809 1.39442 1.49799 1.02858 0.85246 0.80854 0.77336 0.77369 1.19214 1.22890 1.22547 0.93311 0.92054 0.91977 0.93610 0.91949 0.89883 0.93370 0.90089 0.87500 0.92906 0.95479 0.93216 0.94385 0.87846 0.91968 0.85933 0.88675 0.92702 0.86310 0.92028 0.92879 0.87662 0.91312 0.91432 0.79309 0.94441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.88 9.67 71.98 0.70 -3.18 16 2 C -0.11 -3.40 5.19 30.59 0.16 -3.24 16 3 C -0.09 -2.92 2.14 -10.72 -0.02 -2.94 16 4 H 0.08 2.38 8.14 -2.38 -0.02 2.36 16 5 C 0.12 4.30 5.03 86.36 0.43 4.73 16 6 N -0.60 -19.06 2.96 -818.08 -2.42 -21.48 16 7 C 0.54 16.52 4.55 87.66 0.40 16.92 16 8 O -0.58 -21.33 15.52 -3.01 -0.05 -21.38 16 9 C -0.11 -2.39 0.40 -52.40 -0.02 -2.42 16 10 C -0.09 -1.86 4.91 30.59 0.15 -1.71 16 11 C 0.07 1.53 5.60 71.98 0.40 1.93 16 12 O -0.41 -9.37 10.70 -148.98 -1.59 -10.97 16 13 C 0.03 0.45 11.01 113.37 1.25 1.70 16 14 C -0.13 -2.59 5.93 31.12 0.18 -2.41 16 15 C -0.14 -2.90 7.80 31.12 0.24 -2.65 16 16 C -0.11 -2.17 7.13 31.12 0.22 -1.95 16 17 C 0.12 3.70 4.40 86.51 0.38 4.08 16 18 C -0.14 -4.53 5.79 30.82 0.18 -4.35 16 19 C 0.17 6.38 2.53 45.02 0.11 6.49 16 20 H 0.05 1.71 8.08 -2.39 -0.02 1.69 16 21 N -0.72 -33.29 3.71 -322.81 -1.20 -34.49 16 22 C -0.22 -11.63 9.93 84.03 0.83 -10.79 16 23 H 0.07 3.72 7.83 -2.91 -0.02 3.70 16 24 C -0.07 -3.85 5.50 84.86 0.47 -3.38 16 25 N -0.97 -57.19 13.06 21.65 0.28 -56.91 16 26 Si 0.96 44.97 29.55 68.60 2.03 47.00 16 27 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 28 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 29 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 30 H 0.05 1.34 6.70 -2.38 -0.02 1.33 16 31 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.05 1.77 7.69 -2.39 -0.02 1.75 16 34 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.08 2.90 5.72 -2.38 -0.01 2.89 16 36 H 0.05 1.92 6.64 -2.39 -0.02 1.90 16 37 H 0.08 1.66 6.32 -2.39 -0.02 1.65 16 38 H 0.11 1.64 7.85 -2.38 -0.02 1.62 16 39 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.03 0.75 6.84 -2.39 -0.02 0.73 16 41 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.04 0.68 8.14 -2.38 -0.02 0.67 16 43 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.06 1.55 6.20 -2.39 -0.01 1.54 16 45 H 0.12 1.78 8.10 -2.38 -0.02 1.76 16 46 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 47 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 48 H 0.12 1.63 7.90 -2.39 -0.02 1.61 16 49 H 0.06 1.48 7.41 -2.39 -0.02 1.47 16 50 H 0.05 2.00 7.63 -2.39 -0.02 1.98 16 51 H 0.11 2.67 3.45 -2.39 -0.01 2.66 16 52 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 53 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 54 H 0.37 18.89 5.94 -92.71 -0.55 18.34 16 55 H 0.25 14.35 8.31 -92.70 -0.77 13.58 16 Total: -1.00 -64.48 410.65 3.43 -61.04 By element: Atomic # 1 Polarization: 40.04 SS G_CDS: 0.31 Total: 40.36 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: 6.07 Total: -3.17 kcal Atomic # 7 Polarization: -109.54 SS G_CDS: -3.34 Total: -112.88 kcal Atomic # 8 Polarization: -30.71 SS G_CDS: -1.64 Total: -32.35 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -64.48 3.43 -61.04 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670594859.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.210 kcal (2) G-P(sol) polarization free energy of solvation -64.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.62 seconds