Wall clock time and date at job start Tue Mar 31 2020 22:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47165 * 2 1 4 4 H 1.09000 * 109.47744 * 305.02466 * 3 2 1 5 5 C 1.53092 * 109.48066 * 185.00249 * 3 2 1 6 6 C 1.53180 * 109.16324 * 182.40790 * 5 3 2 7 7 H 1.09000 * 109.54056 * 297.02133 * 6 5 3 8 8 C 1.50701 * 109.54239 * 176.84673 * 6 5 3 9 9 O 1.21284 * 120.00009 * 0.02562 * 8 6 5 10 10 N 1.34774 * 119.99567 * 179.97438 * 8 6 5 11 11 C 1.46506 * 119.99751 * 180.02562 * 10 8 6 12 12 H 1.09000 * 109.46901 * 325.00177 * 11 10 8 13 13 C 1.53003 * 109.47068 * 84.99785 * 11 10 8 14 14 C 1.53004 * 109.47012 * 179.97438 * 13 11 10 15 15 C 1.52995 * 109.47249 * 300.00256 * 14 13 11 16 16 H 1.08999 * 109.47414 * 300.00424 * 15 14 13 17 17 C 1.52996 * 109.47350 * 179.97438 * 15 14 13 18 18 N 1.46504 * 109.46681 * 64.99926 * 17 15 14 19 19 C 1.36943 * 119.99781 * 180.02562 * 18 17 15 20 20 H 1.08002 * 119.99788 * 359.97438 * 19 18 17 21 21 C 1.38811 * 119.99622 * 180.27904 * 19 18 17 22 22 N 1.31614 * 120.00467 * 359.72375 * 21 19 18 23 23 Si 1.86801 * 119.99700 * 179.72266 * 21 19 18 24 24 H 1.48496 * 109.47031 * 59.99836 * 23 21 19 25 25 H 1.48497 * 109.47267 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47169 * 300.00118 * 23 21 19 27 27 C 1.53002 * 109.46995 * 60.00122 * 15 14 13 28 28 C 1.52995 * 109.47111 * 204.99991 * 11 10 8 29 29 C 1.53172 * 109.03492 * 56.97969 * 6 5 3 30 30 C 1.53095 * 109.16371 * 303.02100 * 29 6 5 31 31 O 1.42898 * 109.41664 * 57.61143 * 30 29 6 32 32 H 1.09000 * 109.47318 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46899 * 299.99985 * 1 2 3 34 34 H 1.08995 * 109.47362 * 59.99736 * 1 2 3 35 35 H 1.09003 * 109.46899 * 240.00015 * 2 1 3 36 36 H 1.09003 * 109.47586 * 120.00081 * 2 1 3 37 37 H 1.09005 * 109.52094 * 62.50146 * 5 3 2 38 38 H 1.09001 * 109.52304 * 302.31493 * 5 3 2 39 39 H 0.96993 * 120.00334 * 0.02562 * 10 8 6 40 40 H 1.09002 * 109.47209 * 300.00429 * 13 11 10 41 41 H 1.09000 * 109.46940 * 60.00416 * 13 11 10 42 42 H 1.08994 * 109.46688 * 180.02562 * 14 13 11 43 43 H 1.09000 * 109.46819 * 60.00476 * 14 13 11 44 44 H 1.09006 * 109.47179 * 305.00542 * 17 15 14 45 45 H 1.08997 * 109.47540 * 185.00005 * 17 15 14 46 46 H 0.97000 * 120.00410 * 0.02562 * 18 17 15 47 47 H 0.96995 * 120.00147 * 180.02562 * 22 21 19 48 48 H 1.09000 * 109.47257 * 59.99667 * 27 15 14 49 49 H 1.09002 * 109.47364 * 179.97438 * 27 15 14 50 50 H 1.09001 * 109.46802 * 60.00331 * 28 11 10 51 51 H 1.09000 * 109.47390 * 299.99886 * 28 11 10 52 52 H 1.09002 * 109.52363 * 62.92270 * 29 6 5 53 53 H 1.08996 * 109.52398 * 183.11540 * 29 6 5 54 54 H 1.08994 * 109.47709 * 297.62443 * 30 29 6 55 55 H 1.09009 * 109.48614 * 177.59969 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6051 1.9818 -0.8415 5 6 3.5657 1.4446 -0.1259 6 6 4.0734 2.8886 -0.0646 7 1 3.6804 3.4494 -0.9126 8 6 5.5797 2.8957 -0.1099 9 8 6.1891 1.8497 -0.1844 10 7 6.2495 4.0645 -0.0687 11 6 7.7138 4.0715 -0.1133 12 1 8.0977 3.2015 0.4195 13 6 8.1799 4.0242 -1.5698 14 6 9.7092 4.0322 -1.6164 15 6 10.2330 5.3082 -0.9545 16 1 9.8487 6.1780 -1.4873 17 6 11.7623 5.3159 -1.0005 18 7 12.2084 5.3908 -2.3939 19 6 13.5466 5.4102 -2.6843 20 1 14.2730 5.3707 -1.8860 21 6 13.9693 5.4870 -4.0042 22 7 13.0841 5.5358 -4.9770 23 14 15.7946 5.5213 -4.3999 24 1 16.4350 4.2825 -3.8895 25 1 15.9808 5.6044 -5.8708 26 1 16.4191 6.7036 -3.7537 27 6 9.7669 5.3554 0.5020 28 6 8.2381 5.3473 0.5488 29 6 3.5969 3.5306 1.2419 30 6 2.0700 3.4479 1.3150 31 8 1.6632 2.0812 1.2216 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3634 0.5138 -0.8899 35 1 1.8933 -0.5138 -0.8900 36 1 1.8934 -0.5138 0.8900 37 1 3.8533 0.9974 -1.0774 38 1 3.9996 0.8709 0.6932 39 1 5.7621 4.9010 -0.0095 40 1 7.8064 3.1153 -2.0415 41 1 7.7961 4.8942 -2.1026 42 1 10.0412 3.9989 -2.6540 43 1 10.0935 3.1624 -1.0836 44 1 12.1441 4.4019 -0.5454 45 1 12.1380 6.1795 -0.4518 46 1 11.5561 5.4267 -3.1109 47 1 13.3795 5.5891 -5.8993 48 1 10.1511 4.4856 1.0349 49 1 10.1404 6.2643 0.9738 50 1 7.9061 5.3809 1.5865 51 1 7.8543 6.2173 0.0161 52 1 4.0314 2.9990 2.0886 53 1 3.9068 4.5752 1.2687 54 1 1.6356 4.0136 0.4908 55 1 1.7281 3.8650 2.2623 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672987703.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:38 Heat of formation + Delta-G solvation = -137.272281 kcal Electronic energy + Delta-G solvation = -29859.697705 eV Core-core repulsion = 25893.927446 eV Total energy + Delta-G solvation = -3965.770258 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 4.29 seconds Orbital eigenvalues (eV) -41.54919 -40.24748 -39.24926 -36.73319 -35.31595 -34.87484 -34.64018 -33.02499 -31.74179 -30.78110 -30.51312 -27.40696 -26.37574 -24.79331 -24.38081 -23.69876 -22.87283 -21.95345 -21.64406 -21.16176 -20.51570 -19.16499 -18.18251 -17.49288 -17.26825 -16.79723 -16.68452 -16.38636 -15.74698 -15.57476 -15.46127 -15.31748 -15.20381 -14.85171 -14.75038 -14.60106 -14.57475 -14.32027 -13.83504 -13.77735 -13.47315 -13.23014 -13.10498 -12.87684 -12.77238 -12.74188 -12.69280 -12.35426 -12.21564 -12.11962 -12.07510 -12.04082 -11.90464 -11.80597 -11.62132 -11.48587 -11.32783 -11.25380 -11.15916 -10.91264 -10.83591 -10.35496 -10.02865 -8.98769 -7.95530 -5.23863 1.45690 1.49193 1.55286 1.61233 2.14167 2.55652 2.87502 3.37502 3.54359 3.58236 3.71276 3.73335 3.78009 3.92693 3.94904 4.06859 4.13889 4.15607 4.17231 4.37042 4.39653 4.42785 4.45753 4.47612 4.52246 4.53436 4.57261 4.58501 4.73104 4.75119 4.81347 4.84707 4.90791 4.93697 5.05735 5.06467 5.09938 5.12116 5.12772 5.13427 5.19041 5.20234 5.23223 5.30707 5.31633 5.45775 5.45839 5.51307 5.54098 5.60961 6.27039 6.34190 6.57815 7.27746 7.33063 8.10847 8.34007 9.27908 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.026134 B = 0.001754 C = 0.001683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.145615 B =15958.025797 C =16635.980847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.120 4.120 3 C 0.095 3.905 4 H 0.073 0.927 5 C -0.128 4.128 6 C -0.104 4.104 7 H 0.122 0.878 8 C 0.514 3.486 9 O -0.586 6.586 10 N -0.710 5.710 11 C 0.151 3.849 12 H 0.063 0.937 13 C -0.116 4.116 14 C -0.101 4.101 15 C -0.083 4.083 16 H 0.068 0.932 17 C 0.153 3.847 18 N -0.744 5.744 19 C -0.249 4.249 20 H 0.074 0.926 21 C -0.076 4.076 22 N -0.970 5.970 23 Si 0.975 3.025 24 H -0.280 1.280 25 H -0.294 1.294 26 H -0.276 1.276 27 C -0.102 4.102 28 C -0.110 4.110 29 C -0.140 4.140 30 C 0.059 3.941 31 O -0.395 6.395 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.082 0.918 36 H 0.060 0.940 37 H 0.070 0.930 38 H 0.055 0.945 39 H 0.416 0.584 40 H 0.042 0.958 41 H 0.072 0.928 42 H 0.040 0.960 43 H 0.048 0.952 44 H 0.013 0.987 45 H 0.023 0.977 46 H 0.374 0.626 47 H 0.251 0.749 48 H 0.062 0.938 49 H 0.082 0.918 50 H 0.090 0.910 51 H 0.085 0.915 52 H 0.060 0.940 53 H 0.106 0.894 54 H 0.070 0.930 55 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.309 -2.004 15.107 33.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.157 4.157 3 C 0.038 3.962 4 H 0.091 0.909 5 C -0.167 4.167 6 C -0.125 4.125 7 H 0.140 0.860 8 C 0.301 3.699 9 O -0.466 6.466 10 N -0.361 5.361 11 C 0.046 3.954 12 H 0.082 0.918 13 C -0.155 4.155 14 C -0.140 4.140 15 C -0.101 4.101 16 H 0.086 0.914 17 C 0.026 3.974 18 N -0.387 5.387 19 C -0.381 4.381 20 H 0.092 0.908 21 C -0.269 4.269 22 N -0.620 5.620 23 Si 0.803 3.197 24 H -0.206 1.206 25 H -0.220 1.220 26 H -0.202 1.202 27 C -0.141 4.141 28 C -0.148 4.148 29 C -0.178 4.178 30 C -0.017 4.017 31 O -0.315 6.315 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.101 0.899 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.254 0.746 40 H 0.061 0.939 41 H 0.091 0.909 42 H 0.059 0.941 43 H 0.067 0.933 44 H 0.030 0.970 45 H 0.041 0.959 46 H 0.206 0.794 47 H 0.060 0.940 48 H 0.080 0.920 49 H 0.101 0.899 50 H 0.109 0.891 51 H 0.103 0.897 52 H 0.079 0.921 53 H 0.125 0.875 54 H 0.088 0.912 55 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -28.801 -2.830 15.265 32.719 hybrid contribution 1.324 0.116 -1.181 1.778 sum -27.477 -2.715 14.085 30.995 Atomic orbital electron populations 1.21678 0.94470 1.01991 1.02108 1.21582 0.97262 0.94105 1.02796 1.22176 0.92043 0.94695 0.87305 0.90943 1.22005 0.96422 0.95351 1.02885 1.21424 0.89920 0.99149 1.02000 0.86041 1.21128 0.90938 0.83297 0.74530 1.90711 1.71213 1.33566 1.51108 1.45968 1.06854 1.09107 1.74186 1.20864 0.79614 0.99612 0.95296 0.91830 1.21794 0.95038 1.01428 0.97199 1.21366 0.94958 0.97632 1.00017 1.21236 0.93736 0.97627 0.97534 0.91363 1.20891 0.93714 0.97245 0.85504 1.42593 1.03922 1.89052 1.03132 1.19637 0.85215 1.41147 0.92054 0.90827 1.25578 1.01970 1.03692 0.95622 1.69809 1.34059 1.59328 0.98847 0.85196 0.79965 0.78176 0.76331 1.20599 1.22043 1.20182 1.21426 0.95346 1.03014 0.94295 1.21701 0.95095 0.96170 1.01852 1.22200 0.97895 1.02601 0.95142 1.22746 0.92486 0.82511 1.03954 1.87927 1.78651 1.25908 1.39019 0.92156 0.92760 0.92215 0.89899 0.92138 0.91147 0.92604 0.74635 0.93885 0.90926 0.94104 0.93274 0.96952 0.95939 0.79389 0.94018 0.91956 0.89918 0.89139 0.89684 0.92084 0.87542 0.91184 0.87083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.81 71.98 0.71 -0.93 16 2 C -0.12 -1.59 5.64 30.60 0.17 -1.42 16 3 C 0.10 1.30 2.64 30.63 0.08 1.38 16 4 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 5 C -0.13 -2.20 4.02 30.69 0.12 -2.07 16 6 C -0.10 -1.43 2.61 -11.42 -0.03 -1.46 16 7 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 8 C 0.51 10.88 7.12 87.66 0.62 11.50 16 9 O -0.59 -18.66 15.63 -3.04 -0.05 -18.70 16 10 N -0.71 -11.76 4.99 -442.52 -2.21 -13.96 16 11 C 0.15 3.28 2.45 44.99 0.11 3.39 16 12 H 0.06 1.73 7.58 -2.39 -0.02 1.71 16 13 C -0.12 -3.15 5.50 30.60 0.17 -2.98 16 14 C -0.10 -3.38 5.08 30.59 0.16 -3.23 16 15 C -0.08 -2.59 2.23 -10.80 -0.02 -2.61 16 16 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 17 C 0.15 6.24 5.65 86.38 0.49 6.73 16 18 N -0.74 -38.99 5.33 -343.44 -1.83 -40.82 16 19 C -0.25 -14.33 9.99 84.03 0.84 -13.49 16 20 H 0.07 4.07 7.83 -2.91 -0.02 4.05 16 21 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 22 N -0.97 -60.56 13.06 21.65 0.28 -60.28 16 23 Si 0.97 47.08 29.55 68.60 2.03 49.10 16 24 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 25 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 26 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 27 C -0.10 -2.30 5.20 30.58 0.16 -2.14 16 28 C -0.11 -1.85 5.39 30.58 0.16 -1.69 16 29 C -0.14 -1.33 5.30 30.68 0.16 -1.17 16 30 C 0.06 0.52 6.84 72.01 0.49 1.01 16 31 O -0.40 -5.90 9.94 -148.98 -1.48 -7.38 16 32 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.05 0.70 7.82 -2.39 -0.02 0.68 16 34 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 38 H 0.06 1.23 8.02 -2.39 -0.02 1.21 16 39 H 0.42 3.74 8.12 -92.71 -0.75 2.99 16 40 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.04 1.64 7.18 -2.39 -0.02 1.62 16 43 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.01 0.52 8.14 -2.38 -0.02 0.51 16 45 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.37 20.74 6.85 -92.71 -0.64 20.11 16 47 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 48 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 49 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 50 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 51 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 52 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 53 H 0.11 0.43 7.70 -2.39 -0.02 0.41 16 54 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 55 H 0.11 0.66 8.14 -2.38 -0.02 0.64 16 Total: -1.00 -75.35 423.05 1.06 -74.29 By element: Atomic # 1 Polarization: 31.52 SS G_CDS: -0.54 Total: 30.97 kcal Atomic # 6 Polarization: -18.08 SS G_CDS: 4.86 Total: -13.22 kcal Atomic # 7 Polarization: -111.31 SS G_CDS: -3.75 Total: -115.06 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: -1.53 Total: -26.08 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 2.03 Total: 49.10 kcal Total: -75.35 1.06 -74.29 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672987703.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.986 kcal (2) G-P(sol) polarization free energy of solvation -75.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.29 seconds