Wall clock time and date at job start Tue Mar 31 2020 23:13:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.53004 * 109.47304 * 2 1
4 4 H 1.08997 * 109.46966 * 305.00085 * 3 2 1
5 5 C 1.53001 * 109.46926 * 64.99419 * 3 2 1
6 6 C 1.52989 * 109.47212 * 184.99540 * 3 2 1
7 7 H 1.08998 * 109.47197 * 60.00240 * 6 3 2
8 8 O 1.42899 * 109.47619 * 300.00027 * 6 3 2
9 9 C 1.42898 * 114.00052 * 149.99862 * 8 6 3
10 10 C 1.50708 * 109.47205 * 179.97438 * 6 3 2
11 11 O 1.21278 * 119.99640 * 115.00128 * 10 6 3
12 12 N 1.34770 * 119.99842 * 295.00309 * 10 6 3
13 13 C 1.48113 * 127.84964 * 359.97438 * 12 10 6
14 14 C 1.56817 * 104.74803 * 220.29595 * 13 12 10
15 15 C 1.53000 * 112.93197 * 96.96390 * 14 13 12
16 16 C 1.54053 * 109.10595 * 223.62681 * 14 13 12
17 17 N 1.47207 * 106.25092 * 129.74123 * 16 14 13
18 18 C 1.36943 * 126.69990 * 148.61284 * 17 16 14
19 19 H 1.08003 * 119.99648 * 345.36712 * 18 17 16
20 20 C 1.38804 * 119.99839 * 165.36728 * 18 17 16
21 21 N 1.31622 * 120.00247 * 350.70109 * 20 18 17
22 22 Si 1.86810 * 119.99877 * 170.70063 * 20 18 17
23 23 H 1.48498 * 109.46844 * 359.97438 * 22 20 18
24 24 H 1.48495 * 109.47269 * 120.00142 * 22 20 18
25 25 H 1.48497 * 109.46750 * 239.99912 * 22 20 18
26 26 C 1.47201 * 106.59854 * 328.34619 * 17 16 14
27 27 C 1.53758 * 106.40133 * 31.56924 * 26 17 16
28 28 C 1.53002 * 112.06594 * 103.42213 * 27 26 17
29 29 C 1.48111 * 127.84237 * 179.97438 * 12 10 6
30 30 H 1.08998 * 109.46906 * 180.02562 * 1 2 3
31 31 H 1.09000 * 109.47463 * 299.99988 * 1 2 3
32 32 H 1.08998 * 109.47152 * 60.00405 * 1 2 3
33 33 H 1.08995 * 109.47514 * 239.99517 * 2 1 3
34 34 H 1.09007 * 109.46949 * 119.99623 * 2 1 3
35 35 H 1.09009 * 109.47037 * 60.00805 * 5 3 2
36 36 H 1.09006 * 109.47015 * 180.02562 * 5 3 2
37 37 H 1.09001 * 109.47379 * 300.00157 * 5 3 2
38 38 H 1.09006 * 109.47071 * 180.02562 * 9 8 6
39 39 H 1.08999 * 109.46977 * 299.99934 * 9 8 6
40 40 H 1.08995 * 109.47387 * 60.00302 * 9 8 6
41 41 H 1.09004 * 110.38856 * 338.59097 * 13 12 10
42 42 H 1.08996 * 110.38991 * 100.85238 * 13 12 10
43 43 H 1.08997 * 109.47459 * 303.35641 * 15 14 13
44 44 H 1.09004 * 109.46624 * 63.35089 * 15 14 13
45 45 H 1.08999 * 109.46888 * 183.34844 * 15 14 13
46 46 H 1.08996 * 110.21250 * 10.51981 * 16 14 13
47 47 H 1.08991 * 110.07565 * 248.89056 * 16 14 13
48 48 H 0.97001 * 120.00021 * 180.02562 * 21 20 18
49 49 H 1.08999 * 110.06992 * 150.80518 * 26 17 16
50 50 H 1.08999 * 110.06806 * 272.33482 * 26 17 16
51 51 H 1.09003 * 109.47346 * 61.00911 * 28 27 26
52 52 H 1.09000 * 109.47516 * 181.01185 * 28 27 26
53 53 H 1.09002 * 109.46971 * 301.00849 * 28 27 26
54 54 H 1.09002 * 110.39186 * 21.41200 * 29 12 10
55 55 H 1.09002 * 110.39265 * 259.02868 * 29 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6054 1.9815 -0.8418
5 6 1.6352 2.1266 1.3073
6 6 3.5648 1.4443 -0.1256
7 1 3.8532 0.9570 -1.0569
8 8 4.1346 0.7377 0.9780
9 6 5.3745 0.0938 0.6782
10 6 4.0671 2.8652 -0.1262
11 8 4.7643 3.2622 0.7832
12 7 3.7415 3.6946 -1.1374
13 6 2.9092 3.3960 -2.3256
14 6 3.6371 4.1151 -3.5139
15 6 4.5467 3.1777 -4.3107
16 6 2.5894 4.8285 -4.3894
17 7 3.0698 6.2089 -4.5643
18 6 2.8683 7.0137 -5.6539
19 1 2.5206 6.5872 -6.5833
20 6 3.1111 8.3774 -5.5638
21 7 3.3564 8.9262 -4.3929
22 14 3.0895 9.4337 -7.1044
23 1 2.7924 8.5822 -8.2842
24 1 2.0441 10.4800 -6.9726
25 1 4.4156 10.0783 -7.2811
26 6 3.8034 6.5576 -3.3367
27 6 4.4313 5.2524 -2.8207
28 6 5.9296 5.1772 -3.1215
29 6 4.1349 5.1117 -1.3128
30 1 -0.3633 -1.0277 0.0005
31 1 -0.3634 0.5138 0.8900
32 1 -0.3633 0.5138 -0.8900
33 1 1.8934 -0.5139 -0.8899
34 1 1.8933 -0.5138 0.8901
35 1 2.0698 1.5876 2.1492
36 1 1.9981 3.1544 1.3071
37 1 0.5488 2.1253 1.3968
38 1 5.7411 -0.4204 1.5666
39 1 5.2239 -0.6292 -0.1235
40 1 6.1042 0.8395 0.3626
41 1 2.8760 2.3214 -2.5057
42 1 1.9014 3.7890 -2.1917
43 1 5.2753 2.7218 -3.6403
44 1 3.9450 2.3979 -4.7777
45 1 5.0676 3.7455 -5.0816
46 1 1.6201 4.8301 -3.8908
47 1 2.5116 4.3340 -5.3576
48 1 3.5256 9.8793 -4.3299
49 1 4.5836 7.2850 -3.5610
50 1 3.1169 6.9621 -2.5929
51 1 6.4415 6.0023 -2.6262
52 1 6.3268 4.2307 -2.7548
53 1 6.0880 5.2451 -4.1978
54 1 5.0277 5.3332 -0.7280
55 1 3.3170 5.7715 -1.0235
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001675693127.mol2 55
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:13:03
Heat of formation + Delta-G solvation = -77.454016 kcal
Electronic energy + Delta-G solvation = -32604.170146 eV
Core-core repulsion = 28640.993802 eV
Total energy + Delta-G solvation = -3963.176344 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 338.236 amu
Computer time = 1.42 seconds
Orbital eigenvalues (eV)
-41.93415 -40.52216 -38.45998 -36.86477 -36.37242 -34.45620 -33.16773 -32.33476
-31.32699 -29.10010 -28.46257 -27.58753 -27.05421 -26.62315 -26.44747 -24.88711
-23.59714 -21.81995 -21.04745 -20.42733 -19.34159 -18.73423 -18.16779 -17.53871
-17.13329 -16.80941 -16.44340 -16.26311 -15.89926 -15.64227 -15.33754 -15.20373
-14.87065 -14.66084 -14.64327 -14.43055 -14.10015 -13.91914 -13.65525 -13.49270
-13.26794 -13.20825 -13.10985 -13.00396 -12.85483 -12.74908 -12.68270 -12.51540
-12.40217 -12.18863 -12.11015 -11.93093 -11.79101 -11.74658 -11.69808 -11.49559
-11.36461 -11.33253 -11.28919 -11.13071 -10.67681 -10.25921 -9.77425 -8.81669
-7.87333 -5.21889 1.47140 1.48260 1.51916 1.58314 1.81728 2.50937
2.78463 3.28280 3.33386 3.39899 3.61466 3.72176 3.79935 3.90731
3.96035 4.06922 4.13182 4.19564 4.26508 4.29130 4.40905 4.47317
4.52600 4.53554 4.62338 4.65472 4.69389 4.74091 4.77554 4.79503
4.82150 4.84678 4.90209 4.90977 4.98457 5.02162 5.04732 5.16853
5.17328 5.19047 5.22535 5.27466 5.30147 5.37693 5.49508 5.49954
5.54967 5.57604 5.61471 5.76449 6.03258 6.23956 6.55795 7.08898
7.09430 7.77845 8.49544 9.25775
Molecular weight = 338.24amu
Principal moments of inertia in cm(-1)
A = 0.018168 B = 0.003156 C = 0.002990
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1540.808876 B = 8868.935821 C = 9363.852398
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C -0.107 4.107
3 C -0.083 4.083
4 H 0.098 0.902
5 C -0.142 4.142
6 C 0.088 3.912
7 H 0.112 0.888
8 O -0.371 6.371
9 C 0.024 3.976
10 C 0.509 3.491
11 O -0.580 6.580
12 N -0.610 5.610
13 C 0.113 3.887
14 C -0.071 4.071
15 C -0.115 4.115
16 C 0.140 3.860
17 N -0.614 5.614
18 C -0.234 4.234
19 H 0.083 0.917
20 C -0.062 4.062
21 N -0.948 5.948
22 Si 0.972 3.028
23 H -0.263 1.263
24 H -0.295 1.295
25 H -0.295 1.295
26 C 0.191 3.809
27 C -0.085 4.085
28 C -0.110 4.110
29 C 0.123 3.877
30 H 0.063 0.937
31 H 0.052 0.948
32 H 0.059 0.941
33 H 0.078 0.922
34 H 0.064 0.936
35 H 0.054 0.946
36 H 0.024 0.976
37 H 0.074 0.926
38 H 0.100 0.900
39 H 0.069 0.931
40 H 0.026 0.974
41 H 0.113 0.887
42 H 0.081 0.919
43 H 0.062 0.938
44 H 0.080 0.920
45 H 0.048 0.952
46 H 0.024 0.976
47 H 0.056 0.944
48 H 0.246 0.754
49 H 0.037 0.963
50 H -0.008 1.008
51 H 0.042 0.958
52 H 0.064 0.936
53 H 0.053 0.947
54 H 0.065 0.935
55 H 0.059 0.941
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.471 -22.485 5.641 23.228
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C -0.145 4.145
3 C -0.102 4.102
4 H 0.116 0.884
5 C -0.199 4.199
6 C 0.027 3.973
7 H 0.130 0.870
8 O -0.288 6.288
9 C -0.072 4.072
10 C 0.299 3.701
11 O -0.459 6.459
12 N -0.344 5.344
13 C -0.010 4.010
14 C -0.073 4.073
15 C -0.172 4.172
16 C 0.014 3.986
17 N -0.338 5.338
18 C -0.363 4.363
19 H 0.101 0.899
20 C -0.255 4.255
21 N -0.596 5.596
22 Si 0.801 3.199
23 H -0.187 1.187
24 H -0.223 1.223
25 H -0.222 1.222
26 C 0.065 3.935
27 C -0.087 4.087
28 C -0.168 4.168
29 C -0.001 4.001
30 H 0.082 0.918
31 H 0.071 0.929
32 H 0.078 0.922
33 H 0.096 0.904
34 H 0.083 0.917
35 H 0.073 0.927
36 H 0.043 0.957
37 H 0.093 0.907
38 H 0.118 0.882
39 H 0.087 0.913
40 H 0.045 0.955
41 H 0.131 0.869
42 H 0.099 0.901
43 H 0.081 0.919
44 H 0.099 0.901
45 H 0.067 0.933
46 H 0.042 0.958
47 H 0.074 0.926
48 H 0.055 0.945
49 H 0.055 0.945
50 H 0.010 0.990
51 H 0.061 0.939
52 H 0.083 0.917
53 H 0.072 0.928
54 H 0.083 0.917
55 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges -1.163 -22.180 6.330 23.095
hybrid contribution 0.347 1.918 -0.582 2.034
sum -0.816 -20.263 5.748 21.078
Atomic orbital electron populations
1.21827 0.94935 1.02266 1.02096 1.21452 0.96394 0.93574 1.03049
1.21406 0.89614 0.99425 0.99741 0.88393 1.21763 1.01920 0.98656
0.97583 1.22188 0.95691 0.87092 0.92378 0.87036 1.87957 1.37884
1.67483 1.35444 1.23017 0.84831 0.96126 1.03243 1.21692 0.79550
0.88892 0.79963 1.90674 1.40452 1.77959 1.36828 1.49095 1.50926
1.11773 1.22636 1.23219 0.93564 1.02045 0.82130 1.22729 0.95432
0.94470 0.94638 1.21584 0.98628 0.97988 0.99027 1.21637 0.94175
0.85057 0.97707 1.44722 1.61084 1.11705 1.16280 1.19411 1.38640
0.88611 0.89661 0.89932 1.25638 1.02792 0.97778 0.99328 1.70139
1.55420 1.10473 1.23566 0.85107 0.76534 0.78640 0.79631 1.18669
1.22272 1.22244 1.20962 0.93335 0.92306 0.86901 1.22315 0.96490
0.96783 0.93138 1.21547 0.93104 1.00934 1.01171 1.22318 0.99773
0.82494 0.95466 0.91772 0.92923 0.92184 0.90358 0.91689 0.92653
0.95682 0.90688 0.88165 0.91252 0.95474 0.86882 0.90101 0.91875
0.90088 0.93314 0.95827 0.92609 0.94476 0.94455 0.99025 0.93886
0.91709 0.92786 0.91652 0.92231
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.80 9.67 71.98 0.70 -1.10 16
2 C -0.11 -1.40 5.19 30.60 0.16 -1.24 16
3 C -0.08 -1.46 2.10 -10.80 -0.02 -1.48 16
4 H 0.10 1.56 5.98 -2.39 -0.01 1.55 16
5 C -0.14 -3.08 8.56 71.98 0.62 -2.47 16
6 C 0.09 1.83 1.55 29.85 0.05 1.88 16
7 H 0.11 1.68 7.37 -2.39 -0.02 1.66 16
8 O -0.37 -8.52 8.64 -130.00 -1.12 -9.64 16
9 C 0.02 0.41 10.81 113.37 1.23 1.64 16
10 C 0.51 14.94 5.98 87.66 0.52 15.47 16
11 O -0.58 -22.34 16.77 15.96 0.27 -22.07 16
12 N -0.61 -17.27 3.31 -803.36 -2.66 -19.93 16
13 C 0.11 2.61 4.63 87.41 0.41 3.01 16
14 C -0.07 -2.04 1.14 -49.78 -0.06 -2.09 16
15 C -0.12 -2.69 7.61 71.98 0.55 -2.14 16
16 C 0.14 5.06 6.50 86.60 0.56 5.63 16
17 N -0.61 -29.66 3.38 -694.92 -2.35 -32.01 16
18 C -0.23 -12.54 10.28 84.03 0.86 -11.68 16
19 H 0.08 4.21 7.85 -2.91 -0.02 4.19 16
20 C -0.06 -3.43 5.38 84.86 0.46 -2.97 16
21 N -0.95 -56.39 10.87 21.65 0.24 -56.15 16
22 Si 0.97 44.81 29.56 68.60 2.03 46.84 16
23 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16
24 H -0.30 -13.74 7.11 99.48 0.71 -13.04 16
25 H -0.30 -13.74 7.11 99.48 0.71 -13.04 16
26 C 0.19 9.04 4.82 86.50 0.42 9.46 16
27 C -0.08 -3.00 1.07 -50.77 -0.05 -3.05 16
28 C -0.11 -3.64 7.42 71.98 0.53 -3.11 16
29 C 0.12 4.22 6.22 86.52 0.54 4.76 16
30 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16
31 H 0.05 0.67 6.57 -2.39 -0.02 0.65 16
32 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16
33 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16
34 H 0.06 0.96 7.84 -2.38 -0.02 0.94 16
35 H 0.05 1.30 7.68 -2.38 -0.02 1.28 16
36 H 0.02 0.67 7.22 -2.38 -0.02 0.65 16
37 H 0.07 1.35 6.57 -2.39 -0.02 1.33 16
38 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16
39 H 0.07 0.80 8.08 -2.39 -0.02 0.78 16
40 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16
41 H 0.11 1.74 6.51 -2.39 -0.02 1.72 16
42 H 0.08 1.90 7.17 -2.39 -0.02 1.88 16
43 H 0.06 1.32 7.17 -2.39 -0.02 1.31 16
44 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16
45 H 0.05 1.34 7.09 -2.39 -0.02 1.32 16
46 H 0.02 0.86 7.16 -2.39 -0.02 0.84 16
47 H 0.06 1.89 7.87 -2.39 -0.02 1.87 16
48 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16
49 H 0.04 2.04 6.49 -2.39 -0.02 2.02 16
50 H -0.01 -0.43 7.10 -2.39 -0.02 -0.44 16
51 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16
52 H 0.06 1.85 7.16 -2.39 -0.02 1.84 16
53 H 0.05 1.87 7.10 -2.39 -0.02 1.85 16
54 H 0.06 2.38 7.62 -2.39 -0.02 2.36 16
55 H 0.06 2.22 7.15 -2.39 -0.02 2.21 16
Total: -1.00 -71.56 408.83 4.71 -66.85
By element:
Atomic # 1 Polarization: 14.76 SS G_CDS: 0.85 Total: 15.61 kcal
Atomic # 6 Polarization: 3.05 SS G_CDS: 7.46 Total: 10.51 kcal
Atomic # 7 Polarization: -103.32 SS G_CDS: -4.78 Total: -108.10 kcal
Atomic # 8 Polarization: -30.86 SS G_CDS: -0.85 Total: -31.71 kcal
Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal
Total: -71.56 4.71 -66.85 kcal
The number of atoms in the molecule is 55
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001675693127.mol2 55
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -10.605 kcal
(2) G-P(sol) polarization free energy of solvation -71.555 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.160 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.706 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.849 kcal
(6) G-S(sol) free energy of system = (1) + (5) -77.454 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.42 seconds