Wall clock time and date at job start Tue Mar 31 2020 22:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47385 * 2 1 4 4 H 1.08993 * 109.87431 * 55.80226 * 3 2 1 5 5 C 1.54327 * 109.87691 * 294.79160 * 3 2 1 6 6 H 1.09001 * 110.72426 * 336.60007 * 5 3 2 7 7 N 1.46507 * 110.72091 * 99.69462 * 5 3 2 8 8 C 1.34777 * 120.00067 * 202.56106 * 7 5 3 9 9 O 1.21281 * 119.99783 * 359.97438 * 8 7 5 10 10 C 1.50700 * 119.99836 * 180.02562 * 8 7 5 11 11 O 1.42902 * 109.46867 * 179.97438 * 10 8 7 12 12 C 1.42904 * 113.99635 * 179.97438 * 11 10 8 13 13 C 1.53001 * 109.47067 * 269.99631 * 12 11 10 14 14 C 1.52999 * 109.47124 * 300.00131 * 13 12 11 15 15 C 1.52997 * 109.47049 * 300.00055 * 14 13 12 16 16 C 1.53008 * 109.46978 * 180.02562 * 15 14 13 17 17 C 1.53001 * 109.47261 * 60.00551 * 15 14 13 18 18 C 1.52998 * 109.46589 * 149.99920 * 12 11 10 19 19 C 1.55153 * 102.94291 * 218.23217 * 5 3 2 20 20 C 1.54914 * 101.57984 * 35.50316 * 19 5 3 21 21 N 1.47015 * 110.01398 * 176.90870 * 3 2 1 22 22 C 1.36938 * 125.64756 * 298.38791 * 21 3 2 23 23 H 1.07995 * 120.00093 * 345.37624 * 22 21 3 24 24 C 1.38811 * 120.00001 * 165.37176 * 22 21 3 25 25 N 1.31618 * 119.99945 * 359.97438 * 24 22 21 26 26 Si 1.86794 * 120.00157 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47038 * 359.97438 * 26 24 22 28 28 H 1.48498 * 109.47444 * 119.99873 * 26 24 22 29 29 H 1.48503 * 109.47165 * 240.00050 * 26 24 22 30 30 H 1.08998 * 109.48026 * 305.58233 * 1 2 3 31 31 H 1.09000 * 109.47025 * 65.58046 * 1 2 3 32 32 H 1.08998 * 109.47600 * 185.57658 * 1 2 3 33 33 H 1.08999 * 109.47585 * 239.99219 * 2 1 3 34 34 H 1.09007 * 109.47198 * 119.99242 * 2 1 3 35 35 H 0.96998 * 119.99784 * 22.55413 * 7 5 3 36 36 H 1.09009 * 109.46725 * 299.99380 * 10 8 7 37 37 H 1.08992 * 109.47416 * 59.99585 * 10 8 7 38 38 H 1.08995 * 109.47036 * 29.99787 * 12 11 10 39 39 H 1.08997 * 109.47147 * 60.00443 * 13 12 11 40 40 H 1.08999 * 109.46375 * 180.02562 * 13 12 11 41 41 H 1.08998 * 109.46903 * 180.02562 * 14 13 12 42 42 H 1.09003 * 109.47008 * 59.99911 * 14 13 12 43 43 H 1.08993 * 109.47276 * 299.99921 * 15 14 13 44 44 H 1.09003 * 109.46946 * 299.99774 * 16 15 14 45 45 H 1.08992 * 109.47317 * 59.99840 * 16 15 14 46 46 H 1.08997 * 109.47292 * 180.02562 * 16 15 14 47 47 H 1.08997 * 109.46851 * 180.02562 * 17 15 14 48 48 H 1.08993 * 109.47491 * 59.99501 * 17 15 14 49 49 H 1.09008 * 109.47034 * 180.02562 * 18 12 11 50 50 H 1.09009 * 109.47375 * 299.99538 * 18 12 11 51 51 H 1.08999 * 111.00857 * 153.57710 * 19 5 3 52 52 H 1.09008 * 111.00460 * 277.43121 * 19 5 3 53 53 H 1.09001 * 110.36547 * 204.15386 * 20 19 5 54 54 H 1.08996 * 110.45756 * 81.87895 * 20 19 5 55 55 H 0.97007 * 119.99936 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6204 1.9839 0.8478 5 6 1.6412 2.1401 -1.3176 6 1 1.4689 1.4068 -2.1055 7 7 0.4545 2.9768 -1.1225 8 6 -0.3212 3.3022 -2.1756 9 8 -0.0366 2.9026 -3.2848 10 6 -1.5415 4.1633 -1.9750 11 8 -2.1924 4.3670 -3.2308 12 6 -3.3685 5.1749 -3.1515 13 6 -4.5851 4.2813 -2.9020 14 6 -4.7289 3.2827 -4.0522 15 6 -4.9152 4.0425 -5.3670 16 6 -5.0596 3.0438 -6.5172 17 6 -3.6985 4.9360 -5.6166 18 6 -3.5548 5.9347 -4.4664 19 6 2.8843 3.0106 -1.6400 20 6 4.0368 2.1042 -1.1400 21 7 3.5082 1.4570 0.0745 22 6 4.2602 0.9536 1.1022 23 1 3.7934 0.7151 2.0465 24 6 5.6224 0.7496 0.9304 25 7 6.1912 1.0397 -0.2206 26 14 6.6481 0.0622 2.3320 27 1 5.7772 -0.1794 3.5105 28 1 7.2731 -1.2162 1.9075 29 1 7.7094 1.0362 2.6928 30 1 -0.3635 0.5979 0.8357 31 1 -0.3633 0.4249 -0.9357 32 1 -0.3634 -1.0228 0.0999 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 0.2270 3.2965 -0.2355 36 1 -2.2264 3.6682 -1.2865 37 1 -1.2427 5.1261 -1.5606 38 1 -3.2660 5.8863 -2.3321 39 1 -4.4524 3.7400 -1.9653 40 1 -5.4822 4.8976 -2.8420 41 1 -5.5959 2.6464 -3.8747 42 1 -3.8318 2.6665 -4.1127 43 1 -5.8122 4.6587 -5.3066 44 1 -4.1627 2.4273 -6.5778 45 1 -5.9265 2.4076 -6.3392 46 1 -5.1919 3.5851 -7.4540 47 1 -3.8315 5.4777 -6.5530 48 1 -2.8015 4.3199 -5.6770 49 1 -4.4516 6.5513 -4.4058 50 1 -2.6880 6.5713 -4.6442 51 1 2.9669 3.1922 -2.7116 52 1 2.8578 3.9497 -1.0871 53 1 4.9141 2.7044 -0.8988 54 1 4.2856 1.3549 -1.8915 55 1 7.1431 0.8968 -0.3408 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689200083.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:20 Heat of formation + Delta-G solvation = -105.281606 kcal Electronic energy + Delta-G solvation = -30807.680101 eV Core-core repulsion = 26843.297062 eV Total energy + Delta-G solvation = -3964.383039 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 4.34 seconds Orbital eigenvalues (eV) -41.14729 -40.27774 -39.19618 -37.23091 -35.60268 -34.29114 -33.52673 -32.71893 -31.64557 -31.00796 -29.18532 -27.70284 -26.87562 -26.12790 -23.72446 -23.52899 -22.28983 -22.09450 -21.58767 -21.10609 -20.47904 -18.76626 -18.17762 -17.70861 -17.02995 -16.93614 -16.57215 -16.39956 -15.79495 -15.59020 -15.33167 -15.25019 -15.07968 -14.73766 -14.61102 -14.34222 -13.97884 -13.85505 -13.71007 -13.55640 -13.52046 -13.23471 -13.09571 -12.89712 -12.72145 -12.61549 -12.52569 -12.34804 -12.29711 -12.21474 -12.02780 -11.96660 -11.95665 -11.88010 -11.58223 -11.37592 -11.34908 -11.17993 -10.87721 -10.77669 -10.66911 -10.33618 -9.97541 -8.83332 -7.85627 -5.23830 1.46942 1.48005 1.58046 1.65337 1.85550 2.50359 3.06824 3.34934 3.55957 3.78815 3.82428 3.84504 3.90590 3.91063 3.95352 4.19521 4.23966 4.25782 4.29396 4.36167 4.38321 4.41638 4.44805 4.57063 4.61325 4.65272 4.68431 4.72296 4.74795 4.79174 4.87764 4.92780 4.99189 5.01566 5.02495 5.15302 5.16982 5.19167 5.19918 5.31238 5.34167 5.37732 5.42224 5.46286 5.47673 5.49506 5.57318 5.67128 5.69062 5.71202 6.23145 6.26455 6.65028 7.08668 7.31867 7.76502 8.43902 9.26026 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.025252 B = 0.002172 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.539095 B =12886.916731 C =13164.277867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.127 4.127 3 C 0.159 3.841 4 H 0.058 0.942 5 C 0.159 3.841 6 H 0.071 0.929 7 N -0.699 5.699 8 C 0.510 3.490 9 O -0.575 6.575 10 C 0.049 3.951 11 O -0.382 6.382 12 C 0.081 3.919 13 C -0.138 4.138 14 C -0.111 4.111 15 C -0.087 4.087 16 C -0.148 4.148 17 C -0.112 4.112 18 C -0.114 4.114 19 C -0.141 4.141 20 C 0.182 3.818 21 N -0.613 5.613 22 C -0.229 4.229 23 H 0.085 0.915 24 C -0.066 4.066 25 N -0.951 5.951 26 Si 0.975 3.025 27 H -0.262 1.262 28 H -0.297 1.297 29 H -0.293 1.293 30 H 0.070 0.930 31 H 0.046 0.954 32 H 0.057 0.943 33 H 0.031 0.969 34 H 0.050 0.950 35 H 0.416 0.584 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.084 0.916 39 H 0.068 0.932 40 H 0.091 0.909 41 H 0.065 0.935 42 H 0.040 0.960 43 H 0.083 0.917 44 H 0.037 0.963 45 H 0.060 0.940 46 H 0.059 0.941 47 H 0.064 0.936 48 H 0.039 0.961 49 H 0.098 0.902 50 H 0.061 0.939 51 H 0.061 0.939 52 H 0.076 0.924 53 H 0.041 0.959 54 H -0.009 1.009 55 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.994 10.647 -3.275 29.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.166 4.166 3 C 0.053 3.947 4 H 0.075 0.925 5 C 0.053 3.947 6 H 0.089 0.911 7 N -0.353 5.353 8 C 0.297 3.703 9 O -0.453 6.453 10 C -0.031 4.031 11 O -0.301 6.301 12 C 0.024 3.976 13 C -0.175 4.175 14 C -0.148 4.148 15 C -0.106 4.106 16 C -0.206 4.206 17 C -0.150 4.150 18 C -0.151 4.151 19 C -0.181 4.181 20 C 0.056 3.944 21 N -0.338 5.338 22 C -0.358 4.358 23 H 0.102 0.898 24 C -0.259 4.259 25 N -0.599 5.599 26 Si 0.804 3.196 27 H -0.186 1.186 28 H -0.224 1.224 29 H -0.221 1.221 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.050 0.950 34 H 0.069 0.931 35 H 0.254 0.746 36 H 0.124 0.876 37 H 0.125 0.875 38 H 0.102 0.898 39 H 0.086 0.914 40 H 0.110 0.890 41 H 0.084 0.916 42 H 0.059 0.941 43 H 0.101 0.899 44 H 0.056 0.944 45 H 0.079 0.921 46 H 0.078 0.922 47 H 0.083 0.917 48 H 0.058 0.942 49 H 0.116 0.884 50 H 0.079 0.921 51 H 0.080 0.920 52 H 0.095 0.905 53 H 0.059 0.941 54 H 0.009 0.991 55 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -26.540 10.240 -4.187 28.753 hybrid contribution 1.442 -0.647 0.767 1.757 sum -25.097 9.593 -3.420 27.085 Atomic orbital electron populations 1.21642 0.93719 1.01958 1.01755 1.21904 0.96585 0.97704 1.00441 1.21263 0.84378 0.94511 0.94596 0.92481 1.21577 0.84037 0.91936 0.97156 0.91100 1.45699 1.25997 1.52319 1.11261 1.20992 0.84650 0.80572 0.84040 1.90716 1.73277 1.55156 1.26162 1.22315 0.92197 1.00162 0.88385 1.88069 1.41242 1.72279 1.28477 1.22392 0.84176 0.92032 0.99030 1.22035 0.98495 0.98491 0.98492 1.21466 1.00810 0.97913 0.94645 1.21119 0.98237 0.96594 0.94631 1.21832 1.01156 0.99153 0.98414 1.21482 0.97772 0.97484 0.98232 1.21658 1.02781 0.97263 0.93435 1.23223 0.95758 0.98839 1.00277 1.21119 0.93849 0.92286 0.87127 1.44693 1.00647 1.68356 1.20064 1.19353 0.90245 1.34529 0.91682 0.89756 1.25742 0.98682 1.02119 0.99335 1.70157 1.10246 1.54618 1.24923 0.85054 0.78571 0.77076 0.78905 1.18562 1.22413 1.22056 0.91053 0.93503 0.92378 0.94996 0.93085 0.74643 0.87558 0.87518 0.89788 0.91357 0.89019 0.91646 0.94142 0.89887 0.94426 0.92076 0.92198 0.91728 0.94219 0.88375 0.92054 0.92031 0.90518 0.94068 0.99104 0.94434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.55 9.57 71.98 0.69 -2.86 16 2 C -0.13 -4.60 5.42 30.59 0.17 -4.44 16 3 C 0.16 6.09 2.93 45.34 0.13 6.22 16 4 H 0.06 1.97 7.70 -2.39 -0.02 1.95 16 5 C 0.16 5.63 1.97 46.18 0.09 5.72 16 6 H 0.07 2.88 7.27 -2.39 -0.02 2.86 16 7 N -0.70 -18.03 4.90 -436.90 -2.14 -20.17 16 8 C 0.51 14.20 7.91 87.66 0.69 14.89 16 9 O -0.57 -22.53 16.18 16.00 0.26 -22.27 16 10 C 0.05 0.87 6.23 71.24 0.44 1.32 16 11 O -0.38 -8.58 8.17 -129.94 -1.06 -9.64 16 12 C 0.08 1.16 2.92 30.59 0.09 1.25 16 13 C -0.14 -1.69 5.63 30.59 0.17 -1.52 16 14 C -0.11 -1.80 5.06 30.59 0.15 -1.65 16 15 C -0.09 -1.31 2.72 -10.79 -0.03 -1.34 16 16 C -0.15 -2.32 9.20 71.98 0.66 -1.66 16 17 C -0.11 -1.97 5.06 30.59 0.15 -1.81 16 18 C -0.11 -1.61 5.66 30.59 0.17 -1.44 16 19 C -0.14 -5.61 6.77 31.99 0.22 -5.39 16 20 C 0.18 9.20 5.41 86.86 0.47 9.67 16 21 N -0.61 -30.51 3.13 -668.28 -2.09 -32.61 16 22 C -0.23 -12.39 9.76 84.03 0.82 -11.57 16 23 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 24 C -0.07 -3.69 5.47 84.86 0.46 -3.23 16 25 N -0.95 -57.51 10.58 21.65 0.23 -57.28 16 26 Si 0.98 45.32 29.55 68.60 2.03 47.35 16 27 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 28 H -0.30 -14.00 7.11 99.48 0.71 -13.30 16 29 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 30 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.05 1.28 7.39 -2.39 -0.02 1.26 16 32 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.03 1.30 8.07 -2.39 -0.02 1.28 16 34 H 0.05 1.98 7.91 -2.38 -0.02 1.96 16 35 H 0.42 7.69 8.34 -92.71 -0.77 6.92 16 36 H 0.11 1.26 7.87 -2.38 -0.02 1.25 16 37 H 0.11 1.29 8.08 -2.39 -0.02 1.27 16 38 H 0.08 0.81 7.79 -2.39 -0.02 0.79 16 39 H 0.07 0.77 7.87 -2.39 -0.02 0.76 16 40 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.04 0.93 7.68 -2.39 -0.02 0.91 16 43 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 46 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 48 H 0.04 0.98 7.68 -2.39 -0.02 0.96 16 49 H 0.10 0.89 8.14 -2.38 -0.02 0.87 16 50 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 51 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 52 H 0.08 2.80 8.14 -2.38 -0.02 2.78 16 53 H 0.04 2.32 6.93 -2.39 -0.02 2.30 16 54 H -0.01 -0.52 8.06 -2.39 -0.02 -0.54 16 55 H 0.25 14.53 8.31 -92.70 -0.77 13.76 16 Total: -1.00 -74.22 422.14 2.84 -71.37 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: 0.06 Total: 21.08 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: 5.56 Total: 2.17 kcal Atomic # 7 Polarization: -106.05 SS G_CDS: -4.00 Total: -110.05 kcal Atomic # 8 Polarization: -31.11 SS G_CDS: -0.80 Total: -31.91 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -74.22 2.84 -71.37 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689200083.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.910 kcal (2) G-P(sol) polarization free energy of solvation -74.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.34 seconds