Wall clock time and date at job start Wed Apr 1 2020 00:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47652 * 2 1 4 4 H 1.08997 * 109.46892 * 304.19964 * 3 2 1 5 5 O 1.42896 * 109.46882 * 64.19513 * 3 2 1 6 6 C 1.42903 * 114.00258 * 208.33127 * 5 3 2 7 7 C 1.54890 * 110.75618 * 93.20366 * 6 5 3 8 8 C 1.54261 * 104.19471 * 156.25854 * 7 6 5 9 9 C 1.53872 * 106.60144 * 336.39449 * 8 7 6 10 10 C 1.54267 * 106.59790 * 359.97438 * 9 8 7 11 11 C 1.50697 * 109.47435 * 184.19602 * 3 2 1 12 12 O 1.21279 * 120.00264 * 254.09776 * 11 3 2 13 13 N 1.34775 * 119.99904 * 74.09796 * 11 3 2 14 14 C 1.46506 * 120.00197 * 5.47126 * 13 11 3 15 15 C 1.46503 * 120.00230 * 185.47282 * 13 11 3 16 16 C 1.53035 * 109.46213 * 240.02732 * 15 13 11 17 17 C 1.53191 * 109.31274 * 178.59900 * 16 15 13 18 18 N 1.46920 * 108.76433 * 54.65836 * 17 16 15 19 19 C 1.36943 * 120.63406 * 126.40567 * 18 17 16 20 20 H 1.07995 * 119.99372 * 331.93658 * 19 18 17 21 21 C 1.38815 * 120.00034 * 151.93027 * 19 18 17 22 22 N 1.31616 * 119.99506 * 159.75158 * 21 19 18 23 23 Si 1.86797 * 120.00223 * 339.75553 * 21 19 18 24 24 H 1.48510 * 109.46764 * 92.41851 * 23 21 19 25 25 H 1.48498 * 109.47065 * 212.41719 * 23 21 19 26 26 H 1.48500 * 109.47201 * 332.42169 * 23 21 19 27 27 C 1.46925 * 118.73802 * 306.37999 * 18 17 16 28 28 C 1.53044 * 109.46165 * 119.97022 * 15 13 11 29 29 H 1.09000 * 109.47221 * 303.75166 * 1 2 3 30 30 H 1.09005 * 109.46919 * 63.74516 * 1 2 3 31 31 H 1.08999 * 109.47652 * 183.74724 * 1 2 3 32 32 H 1.08998 * 109.47134 * 239.99968 * 2 1 3 33 33 H 1.08999 * 109.47191 * 120.00566 * 2 1 3 34 34 H 1.09002 * 110.66988 * 329.76921 * 6 5 3 35 35 H 1.09000 * 110.48653 * 37.58078 * 7 6 5 36 36 H 1.08995 * 110.48773 * 274.94157 * 7 6 5 37 37 H 1.09001 * 110.03141 * 217.10211 * 8 7 6 38 38 H 1.09002 * 110.03253 * 95.67897 * 8 7 6 39 39 H 1.08993 * 110.03692 * 119.28511 * 9 8 7 40 40 H 1.09000 * 110.03042 * 240.66746 * 9 8 7 41 41 H 1.08999 * 110.48288 * 142.29114 * 10 9 8 42 42 H 1.08994 * 110.49089 * 264.80610 * 10 9 8 43 43 H 1.09002 * 109.46982 * 93.23827 * 14 13 11 44 44 H 1.08991 * 109.47129 * 213.23825 * 14 13 11 45 45 H 1.09000 * 109.46712 * 333.24230 * 14 13 11 46 46 H 1.08996 * 109.45775 * 0.02562 * 15 13 11 47 47 H 1.09003 * 109.50134 * 298.56449 * 16 15 13 48 48 H 1.09008 * 109.49714 * 58.65910 * 16 15 13 49 49 H 1.09003 * 109.59787 * 294.86711 * 17 16 15 50 50 H 1.09005 * 109.70310 * 174.50815 * 17 16 15 51 51 H 0.96998 * 119.99825 * 180.02562 * 22 21 19 52 52 H 1.09001 * 109.58701 * 293.82440 * 27 18 17 53 53 H 1.09001 * 109.70629 * 173.46884 * 27 18 17 54 54 H 1.08999 * 109.49479 * 301.34168 * 28 15 13 55 55 H 1.09006 * 109.49376 * 61.40523 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6166 1.9775 -0.8500 5 8 1.6459 2.0870 1.2129 6 6 1.4782 3.5010 1.0918 7 6 0.0035 3.8537 0.7754 8 6 -0.1522 5.3067 1.2695 9 6 0.9341 5.5271 2.3366 10 6 1.7119 4.2000 2.4543 11 6 3.5434 1.4436 -0.1040 12 8 4.2184 1.7072 0.8686 13 7 4.1380 1.1519 -1.2778 14 6 3.3257 0.9513 -2.4805 15 6 5.5965 1.0351 -1.3511 16 6 6.1414 2.0671 -2.3411 17 6 7.6692 1.9657 -2.3890 18 7 8.0414 0.5784 -2.6980 19 6 8.8789 0.2970 -3.7443 20 1 8.9182 0.9583 -4.5972 21 6 9.6774 -0.8379 -3.7084 22 7 10.1689 -1.3322 -4.8248 23 14 10.0540 -1.6638 -2.0758 24 1 9.0502 -2.7270 -1.8157 25 1 11.4106 -2.2656 -2.1268 26 1 10.0003 -0.6554 -0.9869 27 6 7.4983 -0.5014 -1.8627 28 6 5.9725 -0.3722 -1.8204 29 1 -0.3634 0.5710 0.8545 30 1 -0.3633 0.4546 -0.9217 31 1 -0.3634 -1.0254 0.0672 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.1465 3.9040 0.3309 35 1 -0.6718 3.1919 1.3177 36 1 -0.1814 3.7934 -0.2970 37 1 -1.1403 5.4482 1.7075 38 1 -0.0080 6.0003 0.4410 39 1 1.6056 6.3275 2.0262 40 1 0.4734 5.7763 3.2925 41 1 2.7738 4.3925 2.6068 42 1 1.3138 3.5955 3.2693 43 1 3.2418 1.8928 -3.0233 44 1 3.7992 0.2051 -3.1183 45 1 2.3319 0.6071 -2.1944 46 1 6.0252 1.2154 -0.3654 47 1 5.7324 1.8717 -3.3324 48 1 5.8533 3.0678 -2.0190 49 1 8.0849 2.2489 -1.4220 50 1 8.0575 2.6289 -3.1620 51 1 10.7266 -2.1254 -4.7998 52 1 7.9000 -0.4195 -0.8527 53 1 7.7715 -1.4675 -2.2873 54 1 5.5640 -1.1079 -1.1275 55 1 5.5645 -0.5447 -2.8164 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690028554.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:15 Heat of formation + Delta-G solvation = -87.407173 kcal Electronic energy + Delta-G solvation = -31535.631529 eV Core-core repulsion = 27572.023584 eV Total energy + Delta-G solvation = -3963.607945 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 4.17 seconds Orbital eigenvalues (eV) -41.61660 -39.98717 -39.03055 -37.21783 -36.71645 -34.69361 -33.97214 -32.17472 -32.01148 -29.65181 -29.10068 -28.06554 -27.93563 -26.42374 -24.51760 -23.74656 -22.80419 -21.77509 -21.35401 -20.93996 -20.23895 -18.87216 -18.65132 -17.90759 -17.50942 -16.93082 -16.84118 -16.30439 -15.99279 -15.72692 -15.44426 -15.34856 -15.24752 -14.74129 -14.67436 -14.55972 -14.27315 -14.09395 -14.00102 -13.74396 -13.49944 -13.45633 -13.33915 -13.10227 -13.03657 -12.85774 -12.66373 -12.51890 -12.22327 -12.16974 -12.07237 -12.06080 -11.89959 -11.83557 -11.79383 -11.52018 -11.47967 -11.40192 -11.28394 -11.21586 -10.76975 -10.19579 -9.65640 -8.98894 -8.18881 -5.51351 1.26240 1.38992 1.47075 1.48767 1.84472 2.38408 2.60323 3.02918 3.28530 3.39165 3.59849 3.68765 3.77153 3.85326 3.88874 3.94504 4.00118 4.14853 4.19978 4.22847 4.27217 4.35967 4.41876 4.48538 4.52900 4.56022 4.59282 4.62648 4.64452 4.64777 4.75180 4.77975 4.83764 4.88691 4.90753 4.94382 5.00123 5.02218 5.05429 5.08410 5.11461 5.13272 5.17217 5.22996 5.28643 5.37014 5.44266 5.45554 5.51124 5.85015 6.10466 6.11841 6.40883 6.87761 7.11186 7.58446 8.00114 9.00752 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.019726 B = 0.002653 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.115237 B =10550.663426 C =11011.587796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.117 4.117 3 C 0.084 3.916 4 H 0.110 0.890 5 O -0.362 6.362 6 C 0.074 3.926 7 C -0.137 4.137 8 C -0.120 4.120 9 C -0.121 4.121 10 C -0.122 4.122 11 C 0.481 3.519 12 O -0.577 6.577 13 N -0.603 5.603 14 C 0.059 3.941 15 C 0.151 3.849 16 C -0.123 4.123 17 C 0.146 3.854 18 N -0.618 5.618 19 C -0.246 4.246 20 H 0.059 0.941 21 C -0.029 4.029 22 N -0.952 5.952 23 Si 0.938 3.062 24 H -0.273 1.273 25 H -0.309 1.309 26 H -0.270 1.270 27 C 0.124 3.876 28 C -0.126 4.126 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.098 0.902 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.051 0.949 42 H 0.069 0.931 43 H 0.073 0.927 44 H 0.078 0.922 45 H 0.101 0.899 46 H 0.069 0.931 47 H 0.073 0.927 48 H 0.072 0.928 49 H 0.024 0.976 50 H 0.066 0.934 51 H 0.262 0.738 52 H 0.022 0.978 53 H 0.057 0.943 54 H 0.069 0.931 55 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.902 9.531 9.535 30.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.154 4.154 3 C 0.023 3.977 4 H 0.128 0.872 5 O -0.279 6.279 6 C 0.017 3.983 7 C -0.175 4.175 8 C -0.158 4.158 9 C -0.158 4.158 10 C -0.160 4.160 11 C 0.269 3.731 12 O -0.456 6.456 13 N -0.336 5.336 14 C -0.082 4.082 15 C 0.048 3.952 16 C -0.162 4.162 17 C 0.020 3.980 18 N -0.342 5.342 19 C -0.375 4.375 20 H 0.077 0.923 21 C -0.224 4.224 22 N -0.598 5.598 23 Si 0.768 3.232 24 H -0.200 1.200 25 H -0.238 1.238 26 H -0.195 1.195 27 C -0.002 4.002 28 C -0.166 4.166 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.116 0.884 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.096 0.904 41 H 0.070 0.930 42 H 0.088 0.912 43 H 0.091 0.909 44 H 0.097 0.903 45 H 0.119 0.881 46 H 0.087 0.913 47 H 0.091 0.909 48 H 0.091 0.909 49 H 0.042 0.958 50 H 0.084 0.916 51 H 0.071 0.929 52 H 0.040 0.960 53 H 0.075 0.925 54 H 0.088 0.912 55 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -27.515 9.496 10.156 30.828 hybrid contribution 1.415 -0.555 0.408 1.574 sum -26.099 8.942 10.564 29.542 Atomic orbital electron populations 1.21685 0.92472 1.02828 1.02908 1.21665 0.98748 0.91497 1.03531 1.22237 0.87985 0.97645 0.89846 0.87225 1.87998 1.87141 1.20533 1.32260 1.23359 0.96819 0.80146 0.97991 1.22807 0.95170 0.97436 1.02088 1.22058 0.99394 0.95772 0.98568 1.22079 0.97566 0.95871 1.00311 1.22371 1.00097 0.96828 0.96712 1.22192 0.92669 0.75948 0.82245 1.90673 1.66916 1.49642 1.38389 1.48122 1.06634 1.69142 1.09714 1.22243 0.96228 1.03223 0.86548 1.20791 0.79852 0.95167 0.99424 1.22145 0.96302 0.98335 0.99456 1.21045 0.93408 0.84994 0.98532 1.44505 1.53582 1.01836 1.34315 1.18873 1.15200 1.08400 0.95028 0.92312 1.25827 0.98262 0.99231 0.99072 1.69934 1.38581 1.23970 1.27365 0.86050 0.76094 0.78666 0.82440 1.19989 1.23818 1.19497 1.21310 0.93333 0.92055 0.93486 1.22194 0.96013 0.96349 1.02045 0.92580 0.90830 0.91345 0.88377 0.92460 0.92513 0.90451 0.90201 0.90238 0.90884 0.91450 0.90446 0.93004 0.91199 0.90854 0.90340 0.88071 0.91293 0.90858 0.90908 0.95751 0.91588 0.92883 0.95978 0.92504 0.91218 0.90523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.85 71.98 0.71 -0.88 16 2 C -0.12 -1.86 5.26 30.59 0.16 -1.70 16 3 C 0.08 1.65 1.52 29.85 0.05 1.70 16 4 H 0.11 1.51 6.96 -2.39 -0.02 1.49 16 5 O -0.36 -8.40 8.79 -130.33 -1.15 -9.54 16 6 C 0.07 1.44 3.13 31.89 0.10 1.54 16 7 C -0.14 -1.76 6.55 31.67 0.21 -1.55 16 8 C -0.12 -1.31 6.80 31.32 0.21 -1.10 16 9 C -0.12 -1.63 6.80 31.32 0.21 -1.42 16 10 C -0.12 -2.39 6.55 31.68 0.21 -2.18 16 11 C 0.48 13.40 6.87 87.66 0.60 14.00 16 12 O -0.58 -21.92 15.90 15.62 0.25 -21.67 16 13 N -0.60 -15.15 2.76 -822.44 -2.27 -17.42 16 14 C 0.06 0.96 8.98 127.77 1.15 2.11 16 15 C 0.15 4.81 2.48 45.02 0.11 4.92 16 16 C -0.12 -3.83 5.34 30.67 0.16 -3.67 16 17 C 0.15 5.67 6.52 86.36 0.56 6.23 16 18 N -0.62 -29.05 2.76 -699.11 -1.93 -30.98 16 19 C -0.25 -13.77 10.03 84.03 0.84 -12.93 16 20 H 0.06 3.55 8.06 -2.91 -0.02 3.53 16 21 C -0.03 -1.67 5.23 84.86 0.44 -1.23 16 22 N -0.95 -59.33 13.97 21.65 0.30 -59.03 16 23 Si 0.94 47.23 24.35 68.60 1.67 48.90 16 24 H -0.27 -12.95 6.61 99.48 0.66 -12.30 16 25 H -0.31 -15.80 7.11 99.48 0.71 -15.09 16 26 H -0.27 -13.42 6.66 99.48 0.66 -12.76 16 27 C 0.12 5.34 4.20 86.36 0.36 5.70 16 28 C -0.13 -4.26 5.30 30.67 0.16 -4.10 16 29 H 0.06 0.75 7.70 -2.39 -0.02 0.73 16 30 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 31 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.10 1.27 6.26 -2.39 -0.01 1.26 16 33 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.06 1.18 7.85 -2.39 -0.02 1.16 16 35 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.07 0.88 8.14 -2.39 -0.02 0.87 16 40 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.08 1.36 6.47 -2.39 -0.02 1.35 16 45 H 0.10 1.05 4.59 -2.39 -0.01 1.04 16 46 H 0.07 2.60 6.91 -2.39 -0.02 2.59 16 47 H 0.07 2.20 7.72 -2.39 -0.02 2.19 16 48 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 49 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 50 H 0.07 2.55 7.93 -2.38 -0.02 2.53 16 51 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 52 H 0.02 0.98 7.08 -2.39 -0.02 0.96 16 53 H 0.06 2.67 4.55 -2.39 -0.01 2.66 16 54 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 55 H 0.08 2.48 6.74 -2.38 -0.02 2.47 16 Total: -1.00 -73.75 409.59 3.88 -69.87 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: 0.75 Total: 14.43 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: 6.26 Total: 5.44 kcal Atomic # 7 Polarization: -103.53 SS G_CDS: -3.90 Total: -107.42 kcal Atomic # 8 Polarization: -30.32 SS G_CDS: -0.90 Total: -31.22 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 1.67 Total: 48.90 kcal Total: -73.75 3.88 -69.87 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690028554.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.540 kcal (2) G-P(sol) polarization free energy of solvation -73.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.17 seconds