Wall clock time and date at job start Tue Mar 31 2020 22:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47421 * 2 1 4 4 H 1.08999 * 109.86730 * 54.55373 * 3 2 1 5 5 C 1.54098 * 109.88054 * 175.71193 * 3 2 1 6 6 C 1.54978 * 104.25575 * 121.59176 * 5 3 2 7 7 C 1.54997 * 102.01172 * 20.66374 * 6 5 3 8 8 H 1.09002 * 110.61249 * 81.75395 * 7 6 5 9 9 C 1.50696 * 110.62400 * 204.59552 * 7 6 5 10 10 O 1.21277 * 120.00168 * 112.82018 * 9 7 6 11 11 N 1.34774 * 120.00091 * 292.55023 * 9 7 6 12 12 C 1.46926 * 120.63138 * 359.97438 * 11 9 7 13 13 C 1.52761 * 109.00890 * 233.58498 * 12 11 9 14 14 C 1.53043 * 109.38087 * 305.58604 * 13 12 11 15 15 C 1.52999 * 109.44883 * 181.25649 * 14 13 12 16 16 C 1.53005 * 109.47103 * 64.93485 * 15 14 13 17 17 N 1.46498 * 109.46768 * 180.02562 * 16 15 14 18 18 C 1.46502 * 120.00121 * 270.00093 * 17 16 15 19 19 C 1.36940 * 120.00172 * 90.00144 * 17 16 15 20 20 H 1.07996 * 119.99817 * 22.34677 * 19 17 16 21 21 C 1.38813 * 119.99941 * 202.34036 * 19 17 16 22 22 N 1.31616 * 120.00432 * 11.35500 * 21 19 17 23 23 Si 1.86805 * 119.99535 * 191.35473 * 21 19 17 24 24 H 1.48503 * 109.47190 * 0.02562 * 23 21 19 25 25 H 1.48511 * 109.46750 * 120.00174 * 23 21 19 26 26 H 1.48491 * 109.47123 * 239.99774 * 23 21 19 27 27 C 1.53033 * 109.53909 * 61.24252 * 14 13 12 28 28 C 1.46924 * 120.63200 * 180.27157 * 11 9 7 29 29 O 1.43733 * 109.88052 * 293.54485 * 3 2 1 30 30 H 1.09001 * 109.47028 * 300.00545 * 1 2 3 31 31 H 1.09008 * 109.46730 * 59.99692 * 1 2 3 32 32 H 1.08994 * 109.47166 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47586 * 239.99976 * 2 1 3 34 34 H 1.09000 * 109.47051 * 120.00266 * 2 1 3 35 35 H 1.09003 * 110.49131 * 240.13489 * 5 3 2 36 36 H 1.09000 * 110.48823 * 2.64279 * 5 3 2 37 37 H 1.09010 * 110.84441 * 262.54742 * 6 5 3 38 38 H 1.09001 * 111.05582 * 138.88333 * 6 5 3 39 39 H 1.08999 * 109.58627 * 353.41783 * 12 11 9 40 40 H 1.09001 * 109.58975 * 113.84252 * 12 11 9 41 41 H 1.09006 * 109.56366 * 185.55078 * 13 12 11 42 42 H 1.08996 * 109.38684 * 65.51566 * 13 12 11 43 43 H 1.09001 * 109.45852 * 301.21951 * 14 13 12 44 44 H 1.08998 * 109.47411 * 184.94153 * 15 14 13 45 45 H 1.09000 * 109.47065 * 304.93942 * 15 14 13 46 46 H 1.09000 * 109.47470 * 300.00043 * 16 15 14 47 47 H 1.09000 * 109.46786 * 60.00287 * 16 15 14 48 48 H 1.09002 * 109.46874 * 94.21069 * 18 17 16 49 49 H 1.09003 * 109.47097 * 214.21055 * 18 17 16 50 50 H 1.08996 * 109.47273 * 334.21257 * 18 17 16 51 51 H 0.96992 * 120.00082 * 179.97438 * 22 21 19 52 52 H 1.09002 * 109.49763 * 178.68408 * 27 14 13 53 53 H 1.08998 * 109.52925 * 58.59965 * 27 14 13 54 54 H 1.09008 * 109.58884 * 246.15617 * 28 11 9 55 55 H 1.08997 * 109.58733 * 6.58049 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6030 1.9899 0.8351 5 6 3.5772 1.4547 0.1084 6 6 4.0432 2.2125 -1.1607 7 6 2.7660 2.9973 -1.5550 8 1 2.6788 3.9097 -0.9650 9 6 2.7735 3.3181 -3.0274 10 8 1.9615 2.8009 -3.7649 11 7 3.6792 4.1840 -3.5238 12 6 4.6652 4.8235 -2.6419 13 6 4.5905 6.3380 -2.8278 14 6 4.7600 6.6766 -4.3106 15 6 4.7168 8.1949 -4.4946 16 6 5.9201 8.8281 -3.7930 17 7 5.8784 10.2819 -3.9687 18 6 6.5366 10.8995 -5.1226 19 6 5.2241 11.0636 -3.0543 20 1 5.0562 10.6970 -2.0524 21 6 4.7769 12.3272 -3.4151 22 7 4.7776 12.6891 -4.6805 23 14 4.1742 13.5140 -2.1045 24 1 4.2750 12.8706 -0.7699 25 1 5.0098 14.7415 -2.1262 26 1 2.7592 13.8737 -2.3755 27 6 3.6283 6.0332 -5.1151 28 6 3.6953 4.5113 -4.9560 29 8 1.6939 2.0833 -1.2391 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.8922 1.9881 1.0052 36 1 3.9674 0.4370 0.1142 37 1 4.3283 1.5135 -1.9471 38 1 4.8628 2.8934 -0.9314 39 1 4.4443 4.5728 -1.6044 40 1 5.6656 4.4755 -2.8991 41 1 5.3836 6.8158 -2.2525 42 1 3.6220 6.6978 -2.4808 43 1 5.7184 6.2953 -4.6630 44 1 4.7492 8.4332 -5.5577 45 1 3.7963 8.5872 -4.0622 46 1 5.8877 8.5898 -2.7299 47 1 6.8405 8.4357 -4.2254 48 1 5.8125 11.0304 -5.9268 49 1 6.9392 11.8706 -4.8345 50 1 7.3477 10.2570 -5.4651 51 1 4.4647 13.5719 -4.9326 52 1 3.7364 6.2941 -6.1679 53 1 2.6682 6.3953 -4.7473 54 1 4.6149 4.1372 -5.4061 55 1 2.8347 4.0547 -5.4449 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698952332.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:39 Heat of formation + Delta-G solvation = -93.802802 kcal Electronic energy + Delta-G solvation = -30516.095037 eV Core-core repulsion = 26552.209756 eV Total energy + Delta-G solvation = -3963.885280 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.71971 -40.16203 -38.85106 -37.46021 -35.28411 -34.57738 -33.44631 -32.91504 -32.11951 -30.37804 -29.41430 -27.91063 -26.67490 -25.25996 -24.30417 -23.75785 -22.87234 -21.99440 -21.84494 -21.24675 -20.07421 -18.71851 -18.38606 -17.56589 -17.27606 -16.84663 -16.72865 -16.03643 -15.73977 -15.52044 -15.46020 -15.23956 -14.97810 -14.76420 -14.50147 -14.46496 -14.36164 -14.17411 -13.98924 -13.82010 -13.63226 -13.14247 -12.94834 -12.88899 -12.80052 -12.67777 -12.59765 -12.46423 -12.43065 -12.17762 -12.02051 -12.00443 -11.96571 -11.73633 -11.68920 -11.55297 -11.43485 -11.28662 -11.09272 -10.91680 -10.62189 -10.54471 -9.70152 -8.73475 -7.80502 -5.27102 1.45495 1.45735 1.46669 1.56728 1.76558 2.52430 2.88808 3.31723 3.33453 3.55038 3.68557 3.77769 3.82520 3.91108 3.94899 4.04314 4.09750 4.11292 4.18444 4.29913 4.34297 4.38078 4.42452 4.50841 4.60603 4.61324 4.71885 4.76404 4.81295 4.82571 4.88489 4.89528 4.90929 4.92883 4.99562 5.03273 5.06404 5.10820 5.13569 5.15974 5.24012 5.25924 5.31407 5.36514 5.40587 5.48398 5.59055 5.62560 5.69717 5.77548 5.90494 6.33679 6.37151 7.07665 7.18760 7.93163 8.35792 9.23723 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016502 B = 0.002192 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.380969 B =12772.270580 C =13525.812698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C 0.061 3.939 4 H 0.079 0.921 5 C -0.143 4.143 6 C -0.138 4.138 7 C 0.056 3.944 8 H 0.111 0.889 9 C 0.513 3.487 10 O -0.581 6.581 11 N -0.602 5.602 12 C 0.104 3.896 13 C -0.130 4.130 14 C -0.073 4.073 15 C -0.117 4.117 16 C 0.149 3.851 17 N -0.624 5.624 18 C 0.178 3.822 19 C -0.251 4.251 20 H 0.074 0.926 21 C -0.062 4.062 22 N -0.943 5.943 23 Si 0.965 3.035 24 H -0.263 1.263 25 H -0.292 1.292 26 H -0.297 1.297 27 C -0.123 4.123 28 C 0.116 3.884 29 O -0.380 6.380 30 H 0.060 0.940 31 H 0.034 0.966 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.072 0.928 38 H 0.121 0.879 39 H 0.107 0.893 40 H 0.101 0.899 41 H 0.094 0.906 42 H 0.048 0.952 43 H 0.090 0.910 44 H 0.034 0.966 45 H 0.026 0.974 46 H 0.056 0.944 47 H 0.058 0.942 48 H -0.003 1.003 49 H 0.015 0.985 50 H 0.031 0.969 51 H 0.245 0.755 52 H 0.077 0.923 53 H 0.041 0.959 54 H 0.092 0.908 55 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.281 -26.395 10.735 28.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C 0.004 3.996 4 H 0.096 0.904 5 C -0.181 4.181 6 C -0.175 4.175 7 C -0.004 4.004 8 H 0.128 0.872 9 C 0.302 3.698 10 O -0.460 6.460 11 N -0.336 5.336 12 C -0.017 4.017 13 C -0.168 4.168 14 C -0.092 4.092 15 C -0.158 4.158 16 C 0.024 3.976 17 N -0.347 5.347 18 C 0.033 3.967 19 C -0.381 4.381 20 H 0.091 0.909 21 C -0.256 4.256 22 N -0.591 5.591 23 Si 0.794 3.206 24 H -0.187 1.187 25 H -0.219 1.219 26 H -0.224 1.224 27 C -0.162 4.162 28 C -0.006 4.006 29 O -0.299 6.299 30 H 0.079 0.921 31 H 0.053 0.947 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.118 0.882 35 H 0.122 0.878 36 H 0.112 0.888 37 H 0.090 0.910 38 H 0.139 0.861 39 H 0.125 0.875 40 H 0.119 0.881 41 H 0.112 0.888 42 H 0.066 0.934 43 H 0.109 0.891 44 H 0.053 0.947 45 H 0.045 0.955 46 H 0.074 0.926 47 H 0.076 0.924 48 H 0.016 0.984 49 H 0.034 0.966 50 H 0.049 0.951 51 H 0.054 0.946 52 H 0.096 0.904 53 H 0.060 0.940 54 H 0.110 0.890 55 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.649 -26.572 10.183 28.504 hybrid contribution -0.958 1.482 -0.099 1.768 sum 0.691 -25.090 10.084 27.049 Atomic orbital electron populations 1.21725 0.95998 1.01834 1.01361 1.21750 0.96372 0.94512 1.03120 1.23148 0.95924 0.94395 0.86119 0.90360 1.23064 0.93388 1.03000 0.98627 1.23253 0.96092 0.99666 0.98526 1.23104 0.89701 0.95975 0.91659 0.87163 1.20791 0.79881 0.78575 0.90549 1.90675 1.40135 1.53652 1.61554 1.48161 1.32984 1.42856 1.09550 1.22108 0.92764 0.91982 0.94878 1.21941 1.02758 0.95626 0.96471 1.21053 0.98935 0.93663 0.95567 1.22035 0.99589 0.94714 0.99415 1.21098 0.95827 0.81897 0.98751 1.44302 1.61318 1.02332 1.26785 1.20510 0.92763 0.94564 0.88870 1.19587 1.29054 0.97301 0.92194 0.90863 1.25806 1.00931 1.01194 0.97677 1.70245 1.52913 1.19890 1.16084 0.85217 0.76886 0.79025 0.79457 1.18668 1.21944 1.22434 1.21905 0.98727 0.94395 1.01150 1.21593 1.03180 0.95046 0.80750 1.89014 1.42305 1.57011 1.41586 0.92085 0.94704 0.91842 0.92405 0.88154 0.87819 0.88763 0.90961 0.86083 0.87523 0.88097 0.88769 0.93356 0.89141 0.94738 0.95520 0.92561 0.92380 0.98435 0.96637 0.95081 0.94571 0.90416 0.93966 0.89022 0.91228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 9.82 71.98 0.71 -1.67 16 2 C -0.12 -1.63 5.42 30.59 0.17 -1.46 16 3 C 0.06 0.91 3.42 30.97 0.11 1.01 16 4 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 5 C -0.14 -1.25 6.65 31.64 0.21 -1.04 16 6 C -0.14 -1.54 5.88 31.95 0.19 -1.36 16 7 C 0.06 1.08 2.76 30.53 0.08 1.16 16 8 H 0.11 1.73 7.49 -2.39 -0.02 1.71 16 9 C 0.51 13.37 7.12 87.66 0.62 13.99 16 10 O -0.58 -21.04 15.98 15.21 0.24 -20.80 16 11 N -0.60 -12.62 2.98 -819.80 -2.44 -15.06 16 12 C 0.10 1.46 5.61 86.22 0.48 1.95 16 13 C -0.13 -2.58 5.13 30.53 0.16 -2.42 16 14 C -0.07 -1.73 2.15 -10.77 -0.02 -1.75 16 15 C -0.12 -4.04 5.01 30.60 0.15 -3.89 16 16 C 0.15 5.51 5.47 86.38 0.47 5.98 16 17 N -0.62 -30.74 2.93 -726.92 -2.13 -32.87 16 18 C 0.18 8.84 9.01 127.77 1.15 9.99 16 19 C -0.25 -13.60 9.67 84.03 0.81 -12.79 16 20 H 0.07 3.81 7.84 -2.91 -0.02 3.78 16 21 C -0.06 -3.50 5.13 84.86 0.44 -3.06 16 22 N -0.94 -56.75 10.59 21.65 0.23 -56.52 16 23 Si 0.97 45.29 29.57 68.60 2.03 47.32 16 24 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 25 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 26 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 27 C -0.12 -3.00 5.36 30.66 0.16 -2.84 16 28 C 0.12 2.57 6.43 86.35 0.56 3.13 16 29 O -0.38 -9.19 10.09 -130.75 -1.32 -10.51 16 30 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.03 0.74 7.89 -2.38 -0.02 0.72 16 32 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.09 0.64 7.70 -2.39 -0.02 0.62 16 37 H 0.07 0.98 8.05 -2.38 -0.02 0.96 16 38 H 0.12 0.64 6.54 -2.39 -0.02 0.62 16 39 H 0.11 1.01 4.57 -2.39 -0.01 1.00 16 40 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.09 1.72 6.50 -2.38 -0.02 1.71 16 42 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.06 1.93 6.42 -2.39 -0.02 1.91 16 47 H 0.06 1.87 7.87 -2.39 -0.02 1.85 16 48 H 0.00 -0.15 7.42 -2.39 -0.02 -0.16 16 49 H 0.01 0.82 7.19 -2.39 -0.02 0.80 16 50 H 0.03 1.28 7.84 -2.39 -0.02 1.26 16 51 H 0.24 14.36 8.31 -92.71 -0.77 13.59 16 52 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 53 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 54 H 0.09 1.60 8.14 -2.38 -0.02 1.59 16 55 H 0.07 1.85 7.00 -2.39 -0.02 1.83 16 Total: -1.00 -76.81 416.10 3.89 -72.92 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: 0.83 Total: 10.57 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: 6.45 Total: 4.94 kcal Atomic # 7 Polarization: -100.10 SS G_CDS: -4.34 Total: -104.44 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -1.08 Total: -31.31 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -76.81 3.89 -72.92 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698952332.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.884 kcal (2) G-P(sol) polarization free energy of solvation -76.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds