Wall clock time and date at job start Tue Mar 31 2020 22:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47155 * 2 1 4 4 H 1.09000 * 110.35015 * 52.85814 * 3 2 1 5 5 C 1.54950 * 110.31057 * 175.00161 * 3 2 1 6 6 C 1.55299 * 100.94162 * 155.36109 * 5 3 2 7 7 C 1.54380 * 102.25382 * 325.86430 * 6 5 3 8 8 H 1.08999 * 109.83443 * 261.75282 * 7 6 5 9 9 C 1.50707 * 109.82904 * 140.87246 * 7 6 5 10 10 O 1.21281 * 119.99947 * 245.00299 * 9 7 6 11 11 N 1.34773 * 120.00091 * 65.00213 * 9 7 6 12 12 C 1.46926 * 120.63015 * 180.02562 * 11 9 7 13 13 C 1.53189 * 108.77676 * 126.41003 * 12 11 9 14 14 C 1.53041 * 109.31228 * 54.63619 * 13 12 11 15 15 C 1.52999 * 109.45970 * 178.62744 * 14 13 12 16 16 C 1.53008 * 109.46713 * 185.02691 * 15 14 13 17 17 N 1.46511 * 109.46651 * 180.02562 * 16 15 14 18 18 C 1.46495 * 119.99739 * 269.99785 * 17 16 15 19 19 C 1.36929 * 119.99822 * 89.99893 * 17 16 15 20 20 H 1.08002 * 120.00424 * 22.34162 * 19 17 16 21 21 C 1.38812 * 119.99910 * 202.34131 * 19 17 16 22 22 N 1.31619 * 119.99931 * 11.35665 * 21 19 17 23 23 Si 1.86804 * 120.00123 * 191.35714 * 21 19 17 24 24 H 1.48495 * 109.47060 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.46968 * 119.99722 * 23 21 19 26 26 H 1.48496 * 109.46969 * 239.99643 * 23 21 19 27 27 C 1.53036 * 109.53568 * 298.63243 * 14 13 12 28 28 C 1.46922 * 120.63138 * 0.02562 * 11 9 7 29 29 O 1.43232 * 107.58777 * 21.36178 * 7 6 5 30 30 H 1.09004 * 109.47145 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46975 * 299.99438 * 1 2 3 32 32 H 1.08995 * 109.47263 * 60.00017 * 1 2 3 33 33 H 1.09009 * 109.47188 * 240.00101 * 2 1 3 34 34 H 1.09000 * 109.47581 * 120.00637 * 2 1 3 35 35 H 1.09008 * 111.12290 * 37.44325 * 5 3 2 36 36 H 1.08997 * 111.16263 * 273.29537 * 5 3 2 37 37 H 1.09002 * 110.84611 * 207.67776 * 6 5 3 38 38 H 1.08995 * 110.84978 * 84.05793 * 6 5 3 39 39 H 1.09004 * 109.58573 * 6.62217 * 12 11 9 40 40 H 1.09004 * 109.70232 * 246.27104 * 12 11 9 41 41 H 1.08992 * 109.50033 * 294.68235 * 13 12 11 42 42 H 1.09006 * 109.49769 * 174.58433 * 13 12 11 43 43 H 1.08998 * 109.46201 * 58.65259 * 14 13 12 44 44 H 1.08995 * 109.47340 * 305.02372 * 15 14 13 45 45 H 1.08994 * 109.47152 * 65.02637 * 15 14 13 46 46 H 1.08999 * 109.46684 * 299.99483 * 16 15 14 47 47 H 1.08994 * 109.47356 * 60.00070 * 16 15 14 48 48 H 1.08997 * 109.47141 * 94.20895 * 18 17 16 49 49 H 1.09001 * 109.47067 * 214.21089 * 18 17 16 50 50 H 1.09001 * 109.47627 * 334.20921 * 18 17 16 51 51 H 0.97001 * 119.99664 * 180.02562 * 22 21 19 52 52 H 1.09004 * 109.49903 * 181.31066 * 27 14 13 53 53 H 1.08993 * 109.50085 * 301.41569 * 27 14 13 54 54 H 1.09001 * 109.58633 * 353.37393 * 28 11 9 55 55 H 1.09000 * 109.58755 * 113.79904 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5846 2.0055 0.8147 5 6 3.5841 1.4670 0.1266 6 6 3.9115 2.8384 -0.5245 7 6 2.8320 2.9457 -1.6229 8 1 3.2496 2.6419 -2.5828 9 6 2.3303 4.3641 -1.7097 10 8 1.1782 4.6181 -1.4286 11 7 3.1619 5.3504 -2.0999 12 6 2.6875 6.7381 -2.1889 13 6 3.6209 7.6320 -1.3664 14 6 5.0623 7.4289 -1.8389 15 6 5.9936 8.3454 -1.0429 16 6 7.4148 8.2354 -1.5988 17 7 8.3067 9.1126 -0.8361 18 6 8.5102 10.4994 -1.2622 19 6 8.9499 8.6362 0.2748 20 1 9.1040 7.5741 0.3958 21 6 9.4041 9.5183 1.2456 22 7 9.0276 10.7792 1.2170 23 14 10.5496 8.9160 2.5927 24 1 10.8204 7.4685 2.4015 25 1 11.8271 9.6705 2.5301 26 1 9.9124 9.1303 3.9167 27 6 5.4723 5.9709 -1.6193 28 6 4.5600 5.0582 -2.4442 29 8 1.7570 2.0714 -1.2600 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8933 -0.5139 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 4.0372 0.6484 -0.4327 36 1 3.8937 1.4443 1.1714 37 1 4.9101 2.8318 -0.9614 38 1 3.8092 3.6461 0.2002 39 1 1.6746 6.8042 -1.7917 40 1 2.6938 7.0626 -3.2295 41 1 3.5429 7.3669 -0.3121 42 1 3.3374 8.6758 -1.5015 43 1 5.1344 7.6705 -2.8994 44 1 5.6490 9.3760 -1.1280 45 1 5.9892 8.0462 0.0051 46 1 7.7594 7.2048 -1.5137 47 1 7.4193 8.5347 -2.6469 48 1 7.8185 11.1493 -0.7264 49 1 9.5348 10.8001 -1.0433 50 1 8.3289 10.5807 -2.3339 51 1 9.3452 11.3957 1.8952 52 1 6.5066 5.8324 -1.9344 53 1 5.3769 5.7214 -0.5626 54 1 4.7825 4.0160 -2.2155 55 1 4.7212 5.2439 -3.5061 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698952334.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:51 Heat of formation + Delta-G solvation = -93.207015 kcal Electronic energy + Delta-G solvation = -30765.761810 eV Core-core repulsion = 26801.902365 eV Total energy + Delta-G solvation = -3963.859445 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 3.02 seconds Orbital eigenvalues (eV) -41.79663 -40.11098 -38.80231 -37.45308 -35.28953 -34.60787 -33.48901 -32.95269 -32.07225 -30.36241 -29.45845 -27.91075 -26.66767 -25.19865 -24.27457 -23.77856 -22.80848 -22.26897 -21.71946 -21.21409 -19.93565 -18.76657 -18.68323 -17.46471 -17.28042 -16.89246 -16.71854 -16.12239 -15.76079 -15.47639 -15.31067 -15.23791 -14.93964 -14.83291 -14.64051 -14.35300 -14.17076 -14.09439 -14.05249 -13.84441 -13.53841 -13.12886 -12.98989 -12.90499 -12.81070 -12.74335 -12.57352 -12.45946 -12.44306 -12.24532 -12.05070 -12.00274 -11.92894 -11.78697 -11.67736 -11.57538 -11.44387 -11.28527 -11.20674 -11.06732 -10.61729 -10.29763 -9.67954 -8.73368 -7.79947 -5.26673 1.46174 1.47340 1.50109 1.57379 1.83934 2.52953 2.80819 3.31744 3.34121 3.48097 3.67865 3.69122 3.82066 3.90351 3.96707 4.02077 4.10546 4.14659 4.19569 4.29174 4.34610 4.40413 4.43957 4.49585 4.55302 4.61851 4.70768 4.79457 4.79987 4.82524 4.85480 4.89946 4.92365 4.92973 4.97462 5.00911 5.06743 5.11265 5.12080 5.12975 5.24602 5.26886 5.31595 5.36562 5.40949 5.49549 5.60224 5.62735 5.69884 5.77268 5.94527 6.37228 6.37569 7.10878 7.19001 7.93257 8.36338 9.24334 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014712 B = 0.002415 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.720556 B =11591.535091 C =12867.112712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.115 4.115 3 C 0.066 3.934 4 H 0.051 0.949 5 C -0.141 4.141 6 C -0.145 4.145 7 C 0.067 3.933 8 H 0.133 0.867 9 C 0.494 3.506 10 O -0.584 6.584 11 N -0.603 5.603 12 C 0.115 3.885 13 C -0.121 4.121 14 C -0.074 4.074 15 C -0.116 4.116 16 C 0.150 3.850 17 N -0.624 5.624 18 C 0.178 3.822 19 C -0.250 4.250 20 H 0.075 0.925 21 C -0.062 4.062 22 N -0.944 5.944 23 Si 0.966 3.034 24 H -0.262 1.262 25 H -0.294 1.294 26 H -0.297 1.297 27 C -0.127 4.127 28 C 0.100 3.900 29 O -0.374 6.374 30 H 0.069 0.931 31 H 0.047 0.953 32 H 0.039 0.961 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.105 0.895 36 H 0.098 0.902 37 H 0.125 0.875 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.087 0.913 41 H 0.043 0.957 42 H 0.075 0.925 43 H 0.087 0.913 44 H 0.032 0.968 45 H 0.028 0.972 46 H 0.057 0.943 47 H 0.056 0.944 48 H -0.003 1.003 49 H 0.015 0.985 50 H 0.030 0.970 51 H 0.245 0.755 52 H 0.093 0.907 53 H 0.053 0.947 54 H 0.110 0.890 55 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.825 -21.494 -8.587 25.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.152 4.152 3 C 0.009 3.991 4 H 0.069 0.931 5 C -0.179 4.179 6 C -0.182 4.182 7 C 0.006 3.994 8 H 0.150 0.850 9 C 0.283 3.717 10 O -0.464 6.464 11 N -0.337 5.337 12 C -0.007 4.007 13 C -0.160 4.160 14 C -0.093 4.093 15 C -0.156 4.156 16 C 0.024 3.976 17 N -0.347 5.347 18 C 0.033 3.967 19 C -0.381 4.381 20 H 0.092 0.908 21 C -0.256 4.256 22 N -0.592 5.592 23 Si 0.794 3.206 24 H -0.186 1.186 25 H -0.221 1.221 26 H -0.224 1.224 27 C -0.165 4.165 28 C -0.021 4.021 29 O -0.293 6.293 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.096 0.904 34 H 0.114 0.886 35 H 0.124 0.876 36 H 0.117 0.883 37 H 0.143 0.857 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.105 0.895 41 H 0.062 0.938 42 H 0.094 0.906 43 H 0.105 0.895 44 H 0.051 0.949 45 H 0.047 0.953 46 H 0.076 0.924 47 H 0.074 0.926 48 H 0.016 0.984 49 H 0.034 0.966 50 H 0.048 0.952 51 H 0.054 0.946 52 H 0.111 0.889 53 H 0.072 0.928 54 H 0.128 0.872 55 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -11.557 -21.295 -8.482 25.671 hybrid contribution 0.369 0.980 1.423 1.767 sum -11.187 -20.315 -7.059 24.242 Atomic orbital electron populations 1.21735 0.96092 1.01978 1.01180 1.21659 0.96188 0.93430 1.03919 1.23296 0.95982 0.94488 0.85314 0.93145 1.23348 0.93786 0.97192 1.03525 1.23257 0.99493 0.98778 0.96699 1.22796 0.88180 0.86172 1.02263 0.85018 1.21701 0.85414 0.88744 0.75850 1.90660 1.20288 1.84442 1.50994 1.48231 1.12268 1.07272 1.65964 1.21563 0.97901 0.80254 1.01017 1.21889 0.95339 0.99748 0.99008 1.21051 0.92853 0.95070 1.00303 1.22022 0.97006 0.97907 0.98707 1.21097 0.88333 0.94224 0.93916 1.44299 1.51089 1.09723 1.29610 1.20506 0.98036 0.85046 0.93128 1.19591 1.28951 0.92611 0.96909 0.90760 1.25812 1.03049 0.96496 1.00273 1.70254 1.47997 1.04489 1.36451 0.85212 0.78244 0.78288 0.78816 1.18556 1.22059 1.22418 1.21980 1.00313 0.93927 1.00256 1.22214 0.78002 1.01265 1.00631 1.88499 1.43300 1.58657 1.38842 0.91230 0.93356 0.94141 0.90418 0.88566 0.87643 0.88320 0.85662 0.91686 0.91377 0.89473 0.93793 0.90641 0.89504 0.94879 0.95312 0.92440 0.92579 0.98435 0.96627 0.95182 0.94598 0.88867 0.92821 0.87163 0.88781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 9.85 71.98 0.71 -1.68 16 2 C -0.11 -1.52 5.66 30.59 0.17 -1.34 16 3 C 0.07 1.16 3.40 31.26 0.11 1.27 16 4 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 5 C -0.14 -1.61 6.57 32.05 0.21 -1.40 16 6 C -0.14 -1.97 5.35 31.85 0.17 -1.80 16 7 C 0.07 1.25 3.07 30.32 0.09 1.34 16 8 H 0.13 1.69 7.75 -2.39 -0.02 1.67 16 9 C 0.49 12.78 6.97 87.66 0.61 13.39 16 10 O -0.58 -21.04 15.94 15.76 0.25 -20.79 16 11 N -0.60 -12.80 2.97 -818.96 -2.43 -15.23 16 12 C 0.12 2.60 6.43 86.36 0.56 3.16 16 13 C -0.12 -2.96 5.36 30.67 0.16 -2.79 16 14 C -0.07 -1.74 2.15 -10.77 -0.02 -1.76 16 15 C -0.12 -3.97 5.01 30.60 0.15 -3.81 16 16 C 0.15 5.48 5.47 86.38 0.47 5.95 16 17 N -0.62 -30.56 2.93 -726.92 -2.13 -32.69 16 18 C 0.18 8.83 9.01 127.77 1.15 9.98 16 19 C -0.25 -13.43 9.67 84.03 0.81 -12.62 16 20 H 0.07 3.81 7.84 -2.91 -0.02 3.78 16 21 C -0.06 -3.48 5.13 84.86 0.44 -3.05 16 22 N -0.94 -56.49 10.59 21.65 0.23 -56.26 16 23 Si 0.97 44.83 29.57 68.60 2.03 46.86 16 24 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 25 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 26 H -0.30 -13.94 7.11 99.48 0.71 -13.24 16 27 C -0.13 -2.45 5.14 30.66 0.16 -2.29 16 28 C 0.10 1.44 5.95 86.35 0.51 1.95 16 29 O -0.37 -8.82 10.01 -130.19 -1.30 -10.12 16 30 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 31 H 0.05 0.78 8.14 -2.39 -0.02 0.77 16 32 H 0.04 0.80 7.99 -2.39 -0.02 0.78 16 33 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 34 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.11 0.79 8.06 -2.38 -0.02 0.77 16 36 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.13 0.97 6.66 -2.39 -0.02 0.96 16 38 H 0.06 1.16 7.84 -2.39 -0.02 1.15 16 39 H 0.07 1.84 7.01 -2.39 -0.02 1.83 16 40 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 41 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 43 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.03 1.24 8.14 -2.39 -0.02 1.23 16 45 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.06 1.94 6.42 -2.39 -0.02 1.93 16 47 H 0.06 1.81 7.86 -2.39 -0.02 1.79 16 48 H 0.00 -0.15 7.42 -2.39 -0.02 -0.16 16 49 H 0.01 0.82 7.19 -2.39 -0.02 0.80 16 50 H 0.03 1.24 7.85 -2.39 -0.02 1.23 16 51 H 0.24 14.28 8.31 -92.71 -0.77 13.51 16 52 H 0.09 1.66 6.50 -2.38 -0.02 1.65 16 53 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 54 H 0.11 1.04 3.99 -2.39 -0.01 1.03 16 55 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -75.49 416.19 3.95 -71.55 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: 0.83 Total: 12.19 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: 6.47 Total: 4.49 kcal Atomic # 7 Polarization: -99.85 SS G_CDS: -4.33 Total: -104.18 kcal Atomic # 8 Polarization: -29.86 SS G_CDS: -1.05 Total: -30.91 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -75.49 3.95 -71.55 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698952334.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.659 kcal (2) G-P(sol) polarization free energy of solvation -75.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.02 seconds