Wall clock time and date at job start Tue Mar 31 2020 21:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47020 * 2 1 4 4 C 1.53000 * 109.46909 * 119.99715 * 2 1 3 5 5 H 1.08999 * 109.47526 * 300.00097 * 4 2 1 6 6 C 1.52998 * 109.47194 * 60.00197 * 4 2 1 7 7 C 1.52995 * 109.47453 * 179.97438 * 6 4 2 8 8 C 1.53003 * 109.47424 * 300.00424 * 7 6 4 9 9 H 1.08999 * 109.46710 * 299.99816 * 8 7 6 10 10 C 1.50699 * 109.47104 * 179.97438 * 8 7 6 11 11 O 1.21285 * 120.00182 * 0.02562 * 10 8 7 12 12 N 1.34771 * 119.99834 * 179.97438 * 10 8 7 13 13 C 1.46507 * 120.00084 * 180.02562 * 12 10 8 14 14 C 1.52997 * 109.47075 * 180.02562 * 13 12 10 15 15 O 1.42895 * 110.64603 * 64.29759 * 14 13 12 16 16 C 1.55163 * 110.71954 * 187.44171 * 14 13 12 17 17 C 1.55125 * 101.48392 * 153.72902 * 16 14 13 18 18 N 1.47417 * 104.94799 * 323.22442 * 17 16 14 19 19 C 1.36937 * 125.64904 * 204.04314 * 18 17 16 20 20 H 1.08000 * 119.99793 * 161.47541 * 19 18 17 21 21 C 1.38810 * 119.99899 * 341.47658 * 19 18 17 22 22 N 1.31616 * 120.00123 * 157.63297 * 21 19 18 23 23 Si 1.86802 * 119.99985 * 337.63429 * 21 19 18 24 24 H 1.48490 * 109.47388 * 84.53495 * 23 21 19 25 25 H 1.48503 * 109.47104 * 204.54218 * 23 21 19 26 26 H 1.48508 * 109.46925 * 324.53365 * 23 21 19 27 27 C 1.47020 * 108.70376 * 23.99808 * 18 17 16 28 28 C 1.52998 * 109.47152 * 59.99391 * 8 7 6 29 29 C 1.52995 * 109.47453 * 300.00591 * 28 8 7 30 30 H 1.09001 * 109.47064 * 59.99874 * 1 2 3 31 31 H 1.08998 * 109.47467 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47465 * 300.00337 * 1 2 3 33 33 H 1.08999 * 109.47465 * 239.99663 * 2 1 3 34 34 H 1.09004 * 109.46745 * 179.97438 * 3 2 1 35 35 H 1.08993 * 109.46817 * 299.99610 * 3 2 1 36 36 H 1.08999 * 109.47125 * 60.00081 * 3 2 1 37 37 H 1.08999 * 109.47117 * 60.00090 * 6 4 2 38 38 H 1.09000 * 109.47115 * 300.00452 * 6 4 2 39 39 H 1.09001 * 109.47490 * 179.97438 * 7 6 4 40 40 H 1.09006 * 109.46942 * 59.99656 * 7 6 4 41 41 H 0.97004 * 120.00072 * 0.02562 * 12 10 8 42 42 H 1.08999 * 109.46777 * 300.00221 * 13 12 10 43 43 H 1.08998 * 109.46839 * 59.99816 * 13 12 10 44 44 H 0.96702 * 114.00021 * 300.70338 * 15 14 13 45 45 H 1.08996 * 111.00098 * 271.93715 * 16 14 13 46 46 H 1.08999 * 111.00191 * 35.78761 * 16 14 13 47 47 H 1.08999 * 110.41266 * 204.29122 * 17 16 14 48 48 H 1.09006 * 110.20149 * 82.04455 * 17 16 14 49 49 H 0.97001 * 120.00406 * 179.97438 * 22 21 19 50 50 H 1.08995 * 109.89058 * 239.52520 * 27 18 17 51 51 H 1.09008 * 109.88112 * 118.36216 * 27 18 17 52 52 H 1.08999 * 109.46966 * 60.00581 * 28 8 7 53 53 H 1.09000 * 109.47115 * 179.97438 * 28 8 7 54 54 H 1.09001 * 109.47490 * 180.02562 * 29 28 8 55 55 H 1.09013 * 109.47026 * 299.99968 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6766 -0.2074 2.1393 6 6 1.5299 -2.1637 1.2493 7 6 2.0403 -2.8851 2.4983 8 6 3.5704 -2.8851 2.4978 9 1 3.9334 -3.3988 1.6077 10 6 4.0731 -3.5951 3.7283 11 8 3.2852 -4.0563 4.5268 12 7 5.3981 -3.7186 3.9410 13 6 5.8869 -4.4094 5.1370 14 6 7.4169 -4.4092 5.1365 15 8 7.9206 -3.0757 5.2368 16 6 7.9663 -5.2916 6.2885 17 6 9.3504 -5.7080 5.7254 18 7 9.1313 -5.8985 4.2801 19 6 9.8901 -6.6847 3.4546 20 1 9.4972 -7.0020 2.5000 21 6 11.1640 -7.0739 3.8450 22 7 11.7184 -8.1417 3.3114 23 14 12.0917 -6.0822 5.1277 24 1 11.6844 -6.5247 6.4854 25 1 13.5516 -6.2927 4.9556 26 1 11.7766 -4.6404 4.9617 27 6 7.9626 -5.1054 3.8719 28 6 4.0803 -1.4426 2.4978 29 6 3.5699 -0.7212 1.2489 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 1.8933 -2.6775 0.3594 38 1 0.4399 -2.1637 1.2492 39 1 1.6767 -3.9126 2.4985 40 1 1.6774 -2.3713 3.3885 41 1 6.0283 -3.3501 3.3022 42 1 5.5241 -3.8955 6.0271 43 1 5.5233 -5.4369 5.1371 44 1 7.6369 -2.4931 4.5190 45 1 8.0725 -4.7139 7.2066 46 1 7.3325 -6.1639 6.4487 47 1 9.6833 -6.6389 6.1846 48 1 10.0803 -4.9169 5.8974 49 1 12.6088 -8.4135 3.5838 50 1 7.1995 -5.7595 3.4503 51 1 8.2604 -4.3579 3.1365 52 1 3.7173 -0.9289 3.3879 53 1 5.1703 -1.4426 2.4979 54 1 3.9336 0.3064 1.2486 55 1 3.9330 -1.2349 0.3586 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699904447.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:50 Heat of formation + Delta-G solvation = -118.836550 kcal Electronic energy + Delta-G solvation = -30668.688401 eV Core-core repulsion = 26703.717576 eV Total energy + Delta-G solvation = -3964.970825 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.47876 -40.39358 -39.30945 -36.97253 -35.80549 -35.36218 -34.24555 -32.00013 -31.68715 -30.88989 -29.80956 -27.95821 -27.68447 -25.48631 -24.28064 -23.24290 -22.91148 -21.80782 -21.39294 -20.70798 -20.56869 -18.98880 -18.74527 -17.55913 -17.25568 -16.98632 -16.64742 -16.11191 -15.94105 -15.66472 -15.46991 -15.19017 -15.07333 -14.95850 -14.59231 -14.49118 -14.24412 -14.17409 -13.95928 -13.84323 -13.42581 -13.31907 -13.25071 -13.01355 -12.95939 -12.76489 -12.70274 -12.48729 -12.23092 -12.18394 -12.05274 -11.98338 -11.95717 -11.83359 -11.54736 -11.47358 -11.24538 -11.13615 -11.04858 -10.84403 -10.71855 -10.60142 -10.16380 -9.09349 -8.20670 -5.47487 1.29233 1.37995 1.47179 1.62583 2.11277 2.39159 2.95756 3.14056 3.18060 3.51985 3.61486 3.70578 3.72111 3.75488 3.78924 4.00273 4.10976 4.16509 4.32435 4.35362 4.39612 4.44424 4.47699 4.60491 4.61504 4.65752 4.70890 4.73222 4.74269 4.75198 4.83076 4.87723 4.91480 4.92278 5.03726 5.07355 5.08896 5.13739 5.15406 5.18551 5.21236 5.29053 5.29928 5.32611 5.36849 5.44511 5.49216 5.62254 5.63420 5.70544 6.07139 6.46427 6.71415 6.73782 7.20680 7.50272 8.06370 8.98762 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.020170 B = 0.002217 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.897701 B =12628.767965 C =12989.154743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.090 4.090 3 C -0.150 4.150 4 C -0.080 4.080 5 H 0.063 0.937 6 C -0.110 4.110 7 C -0.096 4.096 8 C -0.100 4.100 9 H 0.112 0.888 10 C 0.516 3.484 11 O -0.583 6.583 12 N -0.719 5.719 13 C 0.117 3.883 14 C 0.125 3.875 15 O -0.552 6.552 16 C -0.109 4.109 17 C 0.105 3.895 18 N -0.624 5.624 19 C -0.235 4.235 20 H 0.063 0.937 21 C -0.035 4.035 22 N -0.953 5.953 23 Si 0.945 3.055 24 H -0.271 1.271 25 H -0.307 1.307 26 H -0.273 1.273 27 C 0.110 3.890 28 C -0.106 4.106 29 C -0.112 4.112 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.054 0.946 36 H 0.051 0.949 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.053 0.947 40 H 0.054 0.946 41 H 0.411 0.589 42 H 0.080 0.920 43 H 0.070 0.930 44 H 0.388 0.612 45 H 0.102 0.898 46 H 0.099 0.901 47 H 0.043 0.957 48 H 0.023 0.977 49 H 0.263 0.737 50 H 0.043 0.957 51 H 0.044 0.956 52 H 0.060 0.940 53 H 0.082 0.918 54 H 0.078 0.922 55 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.138 20.339 -4.217 30.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.108 4.108 3 C -0.207 4.207 4 C -0.099 4.099 5 H 0.082 0.918 6 C -0.148 4.148 7 C -0.134 4.134 8 C -0.121 4.121 9 H 0.130 0.870 10 C 0.304 3.696 11 O -0.463 6.463 12 N -0.372 5.372 13 C -0.008 4.008 14 C 0.083 3.917 15 O -0.360 6.360 16 C -0.147 4.147 17 C -0.019 4.019 18 N -0.351 5.351 19 C -0.363 4.363 20 H 0.081 0.919 21 C -0.230 4.230 22 N -0.600 5.600 23 Si 0.774 3.226 24 H -0.197 1.197 25 H -0.236 1.236 26 H -0.199 1.199 27 C -0.015 4.015 28 C -0.144 4.144 29 C -0.149 4.149 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.248 0.752 42 H 0.098 0.902 43 H 0.089 0.911 44 H 0.237 0.763 45 H 0.120 0.880 46 H 0.117 0.883 47 H 0.061 0.939 48 H 0.040 0.960 49 H 0.072 0.928 50 H 0.061 0.939 51 H 0.062 0.938 52 H 0.079 0.921 53 H 0.100 0.900 54 H 0.096 0.904 55 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -22.247 19.634 -3.180 29.842 hybrid contribution 1.004 0.131 -0.308 1.058 sum -21.243 19.765 -3.488 29.225 Atomic orbital electron populations 1.21906 0.95385 1.01886 1.01604 1.21119 0.95669 0.96250 0.97805 1.21901 1.01466 0.95718 1.01590 1.21200 0.95480 0.95185 0.98010 0.91828 1.21634 1.00833 0.95295 0.97000 1.21287 0.92694 1.00558 0.98827 1.21402 0.97746 0.97737 0.95230 0.87035 1.21265 0.81659 0.78720 0.87925 1.90683 1.56311 1.50479 1.48782 1.45927 1.07432 1.58501 1.25308 1.21762 0.91796 0.98317 0.88901 1.22189 0.90722 0.83267 0.95493 1.86578 1.76042 1.20501 1.52872 1.22778 0.95501 0.99026 0.97391 1.22059 0.97150 0.97988 0.84730 1.44781 1.32884 1.53390 1.04033 1.18574 0.95338 1.21516 1.00893 0.91935 1.25599 0.97834 0.98435 1.01087 1.69956 1.17083 1.24471 1.48486 0.85972 0.76731 0.79935 0.79950 1.19688 1.23581 1.19873 1.22206 0.89366 0.94041 0.95843 1.21531 1.01300 0.92048 0.99512 1.21639 0.94902 1.01055 0.97291 0.92645 0.92365 0.93022 0.91140 0.91973 0.92735 0.92998 0.91309 0.91134 0.92841 0.92740 0.75225 0.90157 0.91148 0.76275 0.88001 0.88273 0.93892 0.95964 0.92813 0.93938 0.93816 0.92106 0.89972 0.90396 0.91026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 8.84 71.98 0.64 -0.80 16 2 C -0.09 -0.85 2.51 -10.79 -0.03 -0.88 16 3 C -0.15 -1.33 8.84 71.98 0.64 -0.69 16 4 C -0.08 -0.85 1.78 -10.79 -0.02 -0.87 16 5 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 6 C -0.11 -1.34 4.85 30.59 0.15 -1.19 16 7 C -0.10 -1.61 4.49 30.59 0.14 -1.48 16 8 C -0.10 -1.56 2.53 -11.54 -0.03 -1.59 16 9 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 10 C 0.52 11.59 7.15 87.66 0.63 12.22 16 11 O -0.58 -18.14 15.98 -3.04 -0.05 -18.19 16 12 N -0.72 -14.23 5.03 -463.06 -2.33 -16.56 16 13 C 0.12 2.80 4.76 86.38 0.41 3.21 16 14 C 0.13 3.49 0.92 -9.60 -0.01 3.48 16 15 O -0.55 -14.45 13.10 -148.98 -1.95 -16.40 16 16 C -0.11 -3.36 6.28 32.06 0.20 -3.16 16 17 C 0.11 4.45 4.69 86.93 0.41 4.86 16 18 N -0.62 -29.35 3.21 -691.55 -2.22 -31.57 16 19 C -0.23 -13.41 10.57 84.03 0.89 -12.52 16 20 H 0.06 3.84 8.06 -2.91 -0.02 3.82 16 21 C -0.03 -2.05 5.43 84.86 0.46 -1.59 16 22 N -0.95 -60.17 13.97 21.65 0.30 -59.87 16 23 Si 0.95 47.57 24.27 68.60 1.66 49.24 16 24 H -0.27 -12.87 6.49 99.48 0.65 -12.22 16 25 H -0.31 -15.56 7.11 99.48 0.71 -14.86 16 26 H -0.27 -13.50 6.66 99.48 0.66 -12.84 16 27 C 0.11 3.90 5.89 86.73 0.51 4.41 16 28 C -0.11 -1.22 5.10 30.59 0.16 -1.07 16 29 C -0.11 -1.06 4.85 30.59 0.15 -0.92 16 30 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.06 0.55 6.43 -2.39 -0.02 0.54 16 32 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.06 0.51 6.43 -2.38 -0.02 0.49 16 35 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.07 0.83 6.43 -2.39 -0.02 0.82 16 39 H 0.05 1.06 8.10 -2.39 -0.02 1.04 16 40 H 0.05 1.07 8.10 -2.38 -0.02 1.05 16 41 H 0.41 6.18 6.84 -92.71 -0.63 5.54 16 42 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.07 1.87 8.09 -2.39 -0.02 1.85 16 44 H 0.39 6.76 8.27 -74.06 -0.61 6.15 16 45 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 46 H 0.10 2.82 8.00 -2.39 -0.02 2.80 16 47 H 0.04 1.95 6.63 -2.39 -0.02 1.94 16 48 H 0.02 1.00 5.58 -2.38 -0.01 0.99 16 49 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 50 H 0.04 1.50 7.82 -2.39 -0.02 1.48 16 51 H 0.04 1.46 8.07 -2.38 -0.02 1.45 16 52 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 53 H 0.08 0.72 7.56 -2.39 -0.02 0.71 16 54 H 0.08 0.65 6.43 -2.39 -0.02 0.64 16 55 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 Total: -1.00 -74.23 408.14 0.22 -74.01 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -0.48 Total: 17.91 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: 5.29 Total: 1.43 kcal Atomic # 7 Polarization: -103.76 SS G_CDS: -4.24 Total: -108.00 kcal Atomic # 8 Polarization: -32.58 SS G_CDS: -2.00 Total: -34.58 kcal Atomic # 14 Polarization: 47.57 SS G_CDS: 1.66 Total: 49.24 kcal Total: -74.23 0.22 -74.01 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699904447.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.826 kcal (2) G-P(sol) polarization free energy of solvation -74.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds