Wall clock time and date at job start Tue Mar 31 2020 22:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47107 * 2 1 4 4 H 1.09000 * 109.47242 * 301.71790 * 3 2 1 5 5 C 1.53001 * 109.46815 * 181.71552 * 3 2 1 6 6 C 1.53002 * 109.47062 * 69.07273 * 5 3 2 7 7 C 1.54272 * 110.02820 * 287.50723 * 6 5 3 8 8 C 1.54889 * 104.19338 * 217.10928 * 7 6 5 9 9 C 1.54885 * 102.75166 * 37.94094 * 8 7 6 10 10 C 1.53875 * 110.03010 * 170.34317 * 6 5 3 11 11 C 1.50700 * 109.46975 * 61.71933 * 3 2 1 12 12 O 1.21287 * 119.99830 * 33.33584 * 11 3 2 13 13 N 1.34772 * 120.00027 * 213.33708 * 11 3 2 14 14 C 1.47152 * 120.98269 * 354.53584 * 13 11 3 15 15 C 1.53293 * 108.38377 * 129.49054 * 14 13 11 16 16 O 1.42955 * 109.22480 * 52.30267 * 15 14 13 17 17 C 1.42963 * 114.16895 * 297.41958 * 16 15 14 18 18 H 1.08994 * 109.55233 * 302.63456 * 17 16 15 19 19 C 1.52999 * 109.51351 * 182.49882 * 17 16 15 20 20 N 1.46508 * 109.46678 * 65.25769 * 19 17 16 21 21 C 1.36939 * 119.99758 * 179.71866 * 20 19 17 22 22 H 1.07993 * 119.99911 * 0.28184 * 21 20 19 23 23 C 1.38807 * 119.99832 * 180.27502 * 21 20 19 24 24 N 1.31622 * 120.00172 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00023 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47241 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47351 * 119.99733 * 25 23 21 28 28 H 1.48507 * 109.46936 * 239.99954 * 25 23 21 29 29 C 1.47150 * 120.98210 * 174.56582 * 13 11 3 30 30 H 1.09000 * 109.46901 * 304.82110 * 1 2 3 31 31 H 1.08999 * 109.47029 * 64.82116 * 1 2 3 32 32 H 1.09000 * 109.46997 * 184.82117 * 1 2 3 33 33 H 1.09008 * 109.47075 * 240.00418 * 2 1 3 34 34 H 1.08999 * 109.47150 * 120.00395 * 2 1 3 35 35 H 1.09010 * 109.46770 * 189.06756 * 5 3 2 36 36 H 1.08996 * 109.47746 * 309.06906 * 5 3 2 37 37 H 1.08996 * 110.02180 * 48.94604 * 6 5 3 38 38 H 1.09003 * 110.48298 * 335.77933 * 7 6 5 39 39 H 1.08995 * 110.48270 * 98.42687 * 7 6 5 40 40 H 1.09005 * 110.75293 * 279.62563 * 8 7 6 41 41 H 1.09007 * 110.75657 * 156.26169 * 8 7 6 42 42 H 1.09000 * 110.48611 * 203.38136 * 9 8 7 43 43 H 1.09001 * 110.59913 * 80.79426 * 9 8 7 44 44 H 1.09006 * 110.02893 * 238.56062 * 10 6 5 45 45 H 1.08996 * 110.03837 * 359.94887 * 10 6 5 46 46 H 1.09003 * 109.68300 * 249.21341 * 14 13 11 47 47 H 1.09007 * 109.68003 * 9.76504 * 14 13 11 48 48 H 1.09000 * 109.50980 * 172.23183 * 15 14 13 49 49 H 1.09009 * 109.51032 * 292.32696 * 15 14 13 50 50 H 1.08992 * 109.47762 * 305.25959 * 19 17 16 51 51 H 1.08999 * 109.46942 * 185.25301 * 19 17 16 52 52 H 0.96998 * 119.99940 * 359.97438 * 20 19 17 53 53 H 0.97002 * 120.00440 * 180.02562 * 24 23 21 54 54 H 1.09000 * 109.68217 * 110.78912 * 29 13 11 55 55 H 1.08999 * 109.71447 * 350.24703 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6518 1.9652 -0.8742 5 6 3.5694 1.4427 -0.0432 6 6 4.0411 0.9409 -1.4095 7 6 3.8029 -0.5789 -1.5253 8 6 5.0292 -1.0962 -2.3176 9 6 6.1869 -0.2330 -1.7577 10 6 5.5569 1.1608 -1.5572 11 6 1.5728 2.1405 1.2512 12 8 1.4576 1.5180 2.2858 13 7 1.2829 3.4563 1.2206 14 6 1.5276 4.2579 0.0111 15 6 0.2489 5.0358 -0.3202 16 8 -0.1803 5.7521 0.8401 17 6 -0.5261 4.9179 1.9484 18 1 -1.3094 4.2213 1.6502 19 6 -1.0268 5.7858 3.1047 20 7 -2.2775 6.4425 2.7162 21 6 -2.9188 7.2704 3.5985 22 1 -2.5002 7.4429 4.5790 23 6 -4.1067 7.8881 3.2326 24 7 -4.6171 7.6777 2.0377 25 14 -4.9812 9.0181 4.4358 26 1 -4.2080 9.0867 5.7018 27 1 -5.0909 10.3775 3.8481 28 1 -6.3402 8.4881 4.7144 29 6 0.7130 4.1340 2.3959 30 1 -0.3633 0.5868 0.8437 31 1 -0.3633 0.4372 -0.9300 32 1 -0.3633 -1.0240 0.0864 33 1 1.8934 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 3.9374 2.4560 0.1186 36 1 3.9551 0.7871 0.7375 37 1 3.5087 1.4646 -2.2035 38 1 3.7673 -1.0358 -0.5363 39 1 2.8822 -0.7800 -2.0729 40 1 4.8999 -0.9229 -3.3860 41 1 5.2022 -2.1532 -2.1147 42 1 7.0060 -0.1818 -2.4750 43 1 6.5383 -0.6332 -0.8066 44 1 5.7601 1.7905 -2.4234 45 1 5.9564 1.6258 -0.6559 46 1 2.3452 4.9557 0.1922 47 1 1.7829 3.6002 -0.8198 48 1 0.4496 5.7388 -1.1286 49 1 -0.5312 4.3396 -0.6284 50 1 -0.2783 6.5415 3.3424 51 1 -1.2016 5.1597 3.9796 52 1 -2.6532 6.2878 1.8354 53 1 -5.4471 8.1096 1.7818 54 1 1.4486 4.8193 2.8171 55 1 0.4290 3.3947 3.1448 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700164395.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:01 Heat of formation + Delta-G solvation = -105.110111 kcal Electronic energy + Delta-G solvation = -30874.720569 eV Core-core repulsion = 26910.344967 eV Total energy + Delta-G solvation = -3964.375602 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.75885 -40.04662 -39.12731 -36.69351 -35.90558 -35.74686 -33.92276 -32.20273 -31.86485 -29.58166 -29.50249 -28.69011 -27.04715 -25.03049 -24.63073 -24.15605 -22.99637 -21.96609 -21.22305 -20.56970 -19.73217 -19.24988 -18.62215 -17.73328 -17.09427 -16.95997 -16.67556 -16.38951 -15.98029 -15.95781 -15.79573 -15.28848 -15.05412 -14.94388 -14.78137 -14.60113 -14.21548 -14.09388 -14.02546 -13.91667 -13.66758 -13.37251 -13.02807 -12.84949 -12.82349 -12.66660 -12.52630 -12.28790 -12.20443 -12.03992 -11.91623 -11.89946 -11.84575 -11.70883 -11.49542 -11.45492 -11.37934 -11.27221 -11.16937 -11.12560 -10.98932 -10.54427 -9.63231 -9.03153 -7.95755 -5.25594 1.46780 1.48385 1.54042 1.58665 1.80319 2.55151 2.73640 3.34718 3.38107 3.54474 3.68267 3.70152 3.83361 3.87270 3.92307 3.97626 4.01202 4.09205 4.12516 4.23589 4.33720 4.37023 4.44656 4.49735 4.53962 4.56935 4.63831 4.66246 4.68392 4.73343 4.78702 4.79668 4.86150 4.90994 4.94195 4.96839 4.98431 5.06041 5.12410 5.14395 5.16364 5.18315 5.25078 5.29218 5.37301 5.39087 5.44023 5.47231 5.55501 5.63267 6.21732 6.25612 6.31300 7.08514 7.31721 8.04679 8.30013 9.28141 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.026567 B = 0.002104 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.671233 B =13305.263475 C =13539.692983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.120 4.120 3 C -0.099 4.099 4 H 0.114 0.886 5 C -0.094 4.094 6 C -0.084 4.084 7 C -0.127 4.127 8 C -0.127 4.127 9 C -0.128 4.128 10 C -0.122 4.122 11 C 0.517 3.483 12 O -0.582 6.582 13 N -0.616 5.616 14 C 0.074 3.926 15 C 0.036 3.964 16 O -0.387 6.387 17 C 0.091 3.909 18 H 0.046 0.954 19 C 0.160 3.840 20 N -0.740 5.740 21 C -0.247 4.247 22 H 0.078 0.922 23 C -0.078 4.078 24 N -0.969 5.969 25 Si 0.978 3.022 26 H -0.265 1.265 27 H -0.292 1.292 28 H -0.292 1.292 29 C 0.095 3.905 30 H 0.021 0.979 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.117 0.883 34 H 0.053 0.947 35 H 0.069 0.931 36 H 0.057 0.943 37 H 0.089 0.911 38 H 0.063 0.937 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.057 0.943 44 H 0.072 0.928 45 H 0.059 0.941 46 H 0.091 0.909 47 H 0.130 0.870 48 H 0.129 0.871 49 H 0.051 0.949 50 H 0.031 0.969 51 H 0.041 0.959 52 H 0.375 0.625 53 H 0.252 0.748 54 H 0.084 0.916 55 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.165 -17.772 -13.735 32.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.157 4.157 3 C -0.120 4.120 4 H 0.132 0.868 5 C -0.132 4.132 6 C -0.102 4.102 7 C -0.164 4.164 8 C -0.165 4.165 9 C -0.166 4.166 10 C -0.160 4.160 11 C 0.308 3.692 12 O -0.461 6.461 13 N -0.349 5.349 14 C -0.048 4.048 15 C -0.041 4.041 16 O -0.306 6.306 17 C 0.032 3.968 18 H 0.064 0.936 19 C 0.033 3.967 20 N -0.383 5.383 21 C -0.379 4.379 22 H 0.096 0.904 23 C -0.270 4.270 24 N -0.620 5.620 25 Si 0.807 3.193 26 H -0.189 1.189 27 H -0.219 1.219 28 H -0.219 1.219 29 C -0.029 4.029 30 H 0.041 0.959 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.134 0.866 34 H 0.071 0.929 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.107 0.893 38 H 0.082 0.918 39 H 0.099 0.901 40 H 0.090 0.910 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.076 0.924 44 H 0.090 0.910 45 H 0.078 0.922 46 H 0.109 0.891 47 H 0.147 0.853 48 H 0.147 0.853 49 H 0.069 0.931 50 H 0.049 0.951 51 H 0.059 0.941 52 H 0.207 0.793 53 H 0.060 0.940 54 H 0.102 0.898 55 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 23.104 -17.811 -13.000 31.938 hybrid contribution -1.087 0.520 0.688 1.387 sum 22.018 -17.291 -12.312 30.583 Atomic orbital electron populations 1.21834 0.96663 1.01912 1.00983 1.21953 0.95257 0.94316 1.04202 1.21559 0.98262 0.97500 0.94663 0.86772 1.21633 0.91075 1.01976 0.98534 1.21780 0.96179 0.96429 0.95855 1.22782 0.98306 0.94899 1.00425 1.22547 0.94730 0.99232 0.99941 1.22376 0.98049 0.95421 1.00734 1.22226 0.94423 0.97425 1.01900 1.21428 0.75707 0.80794 0.91277 1.90663 1.54740 1.65796 1.34916 1.48329 1.62979 1.08899 1.14706 1.22755 0.98537 0.95837 0.87680 1.23251 0.95194 0.97164 0.88479 1.88093 1.86162 1.33804 1.22566 1.22411 0.94792 0.91794 0.87844 0.93641 1.20755 0.87907 0.94132 0.93901 1.42420 1.24408 1.54998 1.16441 1.19701 1.02943 1.18992 0.96232 0.90413 1.25637 0.99348 1.03130 0.98859 1.69846 1.22034 1.49053 1.21064 0.85006 0.77996 0.77937 0.78386 1.18946 1.21857 1.21928 1.22023 0.95287 0.96567 0.89028 0.95935 0.91513 0.91915 0.86553 0.92867 0.91240 0.92378 0.89284 0.91804 0.90084 0.90951 0.91655 0.91417 0.92387 0.90967 0.92219 0.89060 0.85265 0.85334 0.93091 0.95127 0.94112 0.79345 0.93961 0.89824 0.89544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.03 9.75 71.98 0.70 -2.33 16 2 C -0.12 -1.98 4.12 30.60 0.13 -1.85 16 3 C -0.10 -1.58 1.52 -11.54 -0.02 -1.60 16 4 H 0.11 1.30 5.90 -2.39 -0.01 1.28 16 5 C -0.09 -1.23 4.02 30.60 0.12 -1.11 16 6 C -0.08 -0.75 2.89 -10.07 -0.03 -0.78 16 7 C -0.13 -1.14 4.33 31.67 0.14 -1.00 16 8 C -0.13 -1.07 6.91 31.88 0.22 -0.85 16 9 C -0.13 -1.18 6.83 31.67 0.22 -0.96 16 10 C -0.12 -1.11 6.45 31.32 0.20 -0.91 16 11 C 0.52 13.04 5.64 87.66 0.49 13.54 16 12 O -0.58 -19.71 15.23 -3.05 -0.05 -19.75 16 13 N -0.62 -15.05 3.02 -817.33 -2.47 -17.52 16 14 C 0.07 1.27 6.53 86.35 0.56 1.84 16 15 C 0.04 0.82 6.98 72.08 0.50 1.33 16 16 O -0.39 -13.43 10.33 -148.98 -1.54 -14.97 16 17 C 0.09 3.21 2.81 30.70 0.09 3.29 16 18 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 19 C 0.16 6.82 5.93 86.38 0.51 7.33 16 20 N -0.74 -39.90 5.55 -343.46 -1.91 -41.81 16 21 C -0.25 -14.36 9.99 84.03 0.84 -13.52 16 22 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 23 C -0.08 -4.60 5.50 84.86 0.47 -4.14 16 24 N -0.97 -61.07 13.06 21.65 0.28 -60.79 16 25 Si 0.98 47.28 29.55 68.60 2.03 49.30 16 26 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 27 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 28 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 29 C 0.09 2.82 5.91 86.36 0.51 3.33 16 30 H 0.02 0.58 6.78 -2.39 -0.02 0.56 16 31 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.12 1.28 3.97 -2.38 -0.01 1.27 16 34 H 0.05 1.10 7.79 -2.39 -0.02 1.08 16 35 H 0.07 0.88 8.08 -2.38 -0.02 0.86 16 36 H 0.06 0.96 7.86 -2.39 -0.02 0.94 16 37 H 0.09 0.59 8.04 -2.39 -0.02 0.57 16 38 H 0.06 0.71 6.91 -2.39 -0.02 0.69 16 39 H 0.08 0.58 6.55 -2.39 -0.02 0.57 16 40 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 41 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 42 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 43 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.07 0.55 8.14 -2.38 -0.02 0.54 16 45 H 0.06 0.61 7.65 -2.39 -0.02 0.60 16 46 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.13 1.30 5.42 -2.38 -0.01 1.28 16 48 H 0.13 2.27 8.14 -2.39 -0.02 2.25 16 49 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 50 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 51 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 52 H 0.37 21.66 7.67 -92.71 -0.71 20.95 16 53 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 54 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 55 H 0.09 2.80 7.13 -2.39 -0.02 2.78 16 Total: -1.00 -75.16 414.04 2.15 -73.00 By element: Atomic # 1 Polarization: 30.76 SS G_CDS: 0.15 Total: 30.91 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: 5.66 Total: 1.63 kcal Atomic # 7 Polarization: -116.03 SS G_CDS: -4.09 Total: -120.12 kcal Atomic # 8 Polarization: -33.13 SS G_CDS: -1.59 Total: -34.72 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 2.03 Total: 49.30 kcal Total: -75.16 2.15 -73.00 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700164395.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.107 kcal (2) G-P(sol) polarization free energy of solvation -75.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds