Wall clock time and date at job start Tue Mar 31 2020 22:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47113 * 2 1 4 4 H 1.08996 * 109.47523 * 183.94032 * 3 2 1 5 5 C 1.53005 * 109.47168 * 303.93735 * 3 2 1 6 6 C 1.52999 * 109.47092 * 296.49070 * 5 3 2 7 7 C 1.54271 * 110.03284 * 293.29145 * 6 5 3 8 8 C 1.54890 * 104.19494 * 217.10732 * 7 6 5 9 9 C 1.54889 * 102.74885 * 37.94211 * 8 7 6 10 10 C 1.53874 * 110.02911 * 176.12637 * 6 5 3 11 11 C 1.50702 * 109.47279 * 63.93928 * 3 2 1 12 12 O 1.21281 * 119.99840 * 247.08662 * 11 3 2 13 13 N 1.34770 * 120.00039 * 67.08124 * 11 3 2 14 14 C 1.47149 * 120.98347 * 4.53994 * 13 11 3 15 15 C 1.53707 * 108.16317 * 129.42919 * 14 13 11 16 16 O 1.42965 * 109.14764 * 52.54091 * 15 14 13 17 17 C 1.42963 * 114.16429 * 297.29107 * 16 15 14 18 18 H 1.09006 * 109.55090 * 302.62420 * 17 16 15 19 19 C 1.52997 * 109.51299 * 182.50290 * 17 16 15 20 20 N 1.46510 * 109.47177 * 65.25186 * 19 17 16 21 21 C 1.36935 * 119.99785 * 180.02562 * 20 19 17 22 22 H 1.07997 * 120.00271 * 359.97438 * 21 20 19 23 23 C 1.38817 * 119.99919 * 179.97438 * 21 20 19 24 24 N 1.31620 * 119.99642 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 120.00118 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47459 * 60.00088 * 25 23 21 27 27 H 1.48503 * 109.47158 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.47339 * 299.99771 * 25 23 21 29 29 C 1.47151 * 120.98210 * 184.81993 * 13 11 3 30 30 H 1.09009 * 109.46694 * 295.87391 * 1 2 3 31 31 H 1.08996 * 109.47397 * 55.87000 * 1 2 3 32 32 H 1.08996 * 109.47205 * 175.87748 * 1 2 3 33 33 H 1.08997 * 109.47017 * 119.99837 * 2 1 3 34 34 H 1.08997 * 109.46957 * 240.00192 * 2 1 3 35 35 H 1.09001 * 109.47021 * 56.48840 * 5 3 2 36 36 H 1.08999 * 109.47160 * 176.49089 * 5 3 2 37 37 H 1.08997 * 110.01882 * 54.73399 * 6 5 3 38 38 H 1.08998 * 110.48517 * 335.78656 * 7 6 5 39 39 H 1.08998 * 110.48564 * 98.42435 * 7 6 5 40 40 H 1.08999 * 110.75516 * 279.62615 * 8 7 6 41 41 H 1.08999 * 110.75091 * 156.25708 * 8 7 6 42 42 H 1.09003 * 110.48498 * 203.37700 * 9 8 7 43 43 H 1.08999 * 110.59765 * 80.79009 * 9 8 7 44 44 H 1.09000 * 110.03179 * 238.56626 * 10 6 5 45 45 H 1.08996 * 110.03665 * 359.95117 * 10 6 5 46 46 H 1.08994 * 109.68554 * 249.20856 * 14 13 11 47 47 H 1.09004 * 109.67933 * 9.76517 * 14 13 11 48 48 H 1.08996 * 109.66142 * 292.57529 * 15 14 13 49 49 H 1.09002 * 109.44955 * 172.37721 * 15 14 13 50 50 H 1.08998 * 109.47469 * 185.25335 * 19 17 16 51 51 H 1.09002 * 109.47184 * 305.25348 * 19 17 16 52 52 H 0.96999 * 119.99710 * 359.97438 * 20 19 17 53 53 H 0.96998 * 120.00115 * 180.02562 * 24 23 21 54 54 H 1.08999 * 109.68155 * 350.24104 * 29 13 11 55 55 H 1.09003 * 109.68337 * 110.75350 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1277 1.4433 -0.0706 5 6 1.4508 2.1918 -1.1968 6 6 1.9491 1.5525 -2.4944 7 6 3.4693 1.7703 -2.6410 8 6 3.6747 2.0057 -4.1581 9 6 2.4304 2.8426 -4.5457 10 6 1.2885 2.2343 -3.7054 11 6 1.6190 2.1242 1.2764 12 8 0.8152 3.0317 1.2424 13 7 2.1356 1.7253 2.4555 14 6 3.1846 0.6949 2.5131 15 6 4.3347 1.2301 3.3811 16 8 3.8094 1.6714 4.6354 17 6 2.8835 2.7558 4.5332 18 1 3.3613 3.5974 4.0314 19 6 2.4384 3.1816 5.9337 20 7 3.5847 3.7259 6.6660 21 6 3.4266 4.1741 7.9502 22 1 2.4568 4.1267 8.4231 23 6 4.5128 4.6893 8.6442 24 7 5.6948 4.7466 8.0680 25 14 4.2969 5.3013 10.3958 26 1 3.8185 4.1878 11.2539 27 1 5.5983 5.7982 10.9105 28 1 3.3026 6.4041 10.4159 29 6 1.6631 2.3029 3.7237 30 1 -0.3633 0.4485 0.9247 31 1 -0.3634 0.5766 -0.8506 32 1 -0.3633 -1.0250 -0.0739 33 1 1.8934 -0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 0.3627 2.1375 -1.1595 36 1 1.7639 3.2352 -1.1622 37 1 1.7220 0.4864 -2.4964 38 1 3.7859 2.6450 -2.0729 39 1 4.0147 0.8847 -2.3150 40 1 3.6868 1.0588 -4.6978 41 1 4.5906 2.5676 -4.3412 42 1 2.2177 2.7396 -5.6098 43 1 2.5777 3.8911 -4.2868 44 1 0.7416 1.4990 -4.2956 45 1 0.6124 3.0201 -3.3687 46 1 2.7806 -0.2159 2.9550 47 1 3.5490 0.4854 1.5074 48 1 4.8182 2.0654 2.8748 49 1 5.0618 0.4357 3.5501 50 1 1.6638 3.9441 5.8527 51 1 2.0433 2.3175 6.4677 52 1 4.4558 3.7681 6.2413 53 1 6.4539 5.1063 8.5530 54 1 1.0194 3.1586 3.5201 55 1 1.1079 1.5514 4.2851 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700164396.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:07 Heat of formation + Delta-G solvation = -111.553557 kcal Electronic energy + Delta-G solvation = -30842.635555 eV Core-core repulsion = 26877.980544 eV Total energy + Delta-G solvation = -3964.655011 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.77661 -40.03136 -39.04977 -36.72469 -36.27262 -35.67165 -33.90924 -31.91347 -31.48238 -29.67292 -29.42724 -28.67048 -27.05530 -25.37919 -24.71850 -24.22537 -22.85535 -21.92087 -21.48475 -20.26409 -19.62317 -19.22182 -18.12152 -17.77460 -17.16688 -16.98804 -16.87925 -16.34088 -16.13144 -15.92056 -15.73127 -15.57331 -15.13769 -15.02990 -14.79986 -14.34610 -14.20281 -14.15746 -13.96050 -13.84974 -13.68661 -13.33116 -12.95347 -12.84494 -12.75633 -12.64699 -12.48511 -12.30832 -12.10109 -12.03061 -11.93497 -11.91407 -11.84403 -11.76295 -11.61937 -11.50593 -11.43281 -11.28588 -11.16222 -11.08869 -10.96498 -10.62495 -9.61487 -9.03118 -7.95197 -5.25199 1.46658 1.50933 1.56349 1.57055 1.80950 2.55677 2.74188 3.36581 3.38310 3.55483 3.62639 3.78098 3.83663 3.88648 3.91315 4.00019 4.01177 4.06576 4.11619 4.26967 4.32299 4.38209 4.43906 4.47986 4.55830 4.58749 4.63745 4.64121 4.70345 4.74362 4.77237 4.83248 4.85477 4.87661 4.92130 4.94668 5.03691 5.06319 5.08726 5.12037 5.18204 5.21287 5.25417 5.29499 5.31405 5.44824 5.46673 5.47984 5.52419 5.64790 6.21929 6.25872 6.32341 7.08791 7.31832 8.05015 8.30347 9.28351 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.020533 B = 0.002143 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.310686 B =13059.727540 C =13404.289014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.113 4.113 3 C -0.100 4.100 4 H 0.115 0.885 5 C -0.089 4.089 6 C -0.085 4.085 7 C -0.124 4.124 8 C -0.124 4.124 9 C -0.128 4.128 10 C -0.124 4.124 11 C 0.516 3.484 12 O -0.584 6.584 13 N -0.615 5.615 14 C 0.076 3.924 15 C 0.035 3.965 16 O -0.387 6.387 17 C 0.090 3.910 18 H 0.043 0.957 19 C 0.160 3.840 20 N -0.740 5.740 21 C -0.250 4.250 22 H 0.078 0.922 23 C -0.077 4.077 24 N -0.970 5.970 25 Si 0.979 3.021 26 H -0.276 1.276 27 H -0.294 1.294 28 H -0.277 1.277 29 C 0.095 3.905 30 H 0.025 0.975 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.104 0.896 35 H 0.062 0.938 36 H 0.044 0.956 37 H 0.092 0.908 38 H 0.054 0.946 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.054 0.946 44 H 0.072 0.928 45 H 0.052 0.948 46 H 0.094 0.906 47 H 0.129 0.871 48 H 0.048 0.952 49 H 0.129 0.871 50 H 0.041 0.959 51 H 0.031 0.969 52 H 0.374 0.626 53 H 0.252 0.748 54 H 0.086 0.914 55 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.387 -14.703 -27.964 32.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.150 4.150 3 C -0.120 4.120 4 H 0.133 0.867 5 C -0.127 4.127 6 C -0.103 4.103 7 C -0.161 4.161 8 C -0.162 4.162 9 C -0.166 4.166 10 C -0.162 4.162 11 C 0.307 3.693 12 O -0.463 6.463 13 N -0.348 5.348 14 C -0.046 4.046 15 C -0.042 4.042 16 O -0.306 6.306 17 C 0.031 3.969 18 H 0.061 0.939 19 C 0.033 3.967 20 N -0.383 5.383 21 C -0.381 4.381 22 H 0.096 0.904 23 C -0.270 4.270 24 N -0.620 5.620 25 Si 0.807 3.193 26 H -0.202 1.202 27 H -0.220 1.220 28 H -0.203 1.203 29 C -0.029 4.029 30 H 0.045 0.955 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.122 0.878 35 H 0.080 0.920 36 H 0.062 0.938 37 H 0.110 0.890 38 H 0.073 0.927 39 H 0.099 0.901 40 H 0.094 0.906 41 H 0.083 0.917 42 H 0.088 0.912 43 H 0.072 0.928 44 H 0.090 0.910 45 H 0.071 0.929 46 H 0.112 0.888 47 H 0.147 0.853 48 H 0.067 0.933 49 H 0.147 0.853 50 H 0.059 0.941 51 H 0.049 0.951 52 H 0.206 0.794 53 H 0.061 0.939 54 H 0.105 0.895 55 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.873 -14.279 -27.659 31.878 hybrid contribution 0.226 1.111 0.984 1.501 sum -6.647 -13.168 -26.676 30.482 Atomic orbital electron populations 1.21866 0.96255 1.02273 1.01007 1.21656 0.96044 0.92645 1.04705 1.21457 1.03038 0.97246 0.90298 0.86727 1.21522 1.00525 0.98049 0.92593 1.21817 0.95222 1.00577 0.92717 1.22512 0.95312 1.01814 0.96478 1.22498 0.97543 1.00209 0.95923 1.22379 0.95347 0.99096 0.99782 1.22229 0.97852 0.99799 0.96293 1.21463 0.79942 0.82231 0.85709 1.90669 1.36635 1.31801 1.87239 1.48269 1.40027 1.41040 1.05490 1.22856 0.87630 0.90700 1.03432 1.23344 0.95894 1.00316 0.84617 1.88093 1.60961 1.51115 1.30449 1.22409 0.89790 0.88743 0.95966 0.93859 1.20757 0.90424 0.95982 0.89511 1.42415 1.07908 1.74618 1.13367 1.19633 0.95257 1.32395 0.90832 0.90423 1.25650 0.95330 1.03041 1.02936 1.69835 1.00305 1.53182 1.38696 0.85132 0.76359 0.78272 0.79495 1.20221 1.22002 1.20286 1.22021 0.96033 1.00257 0.84596 0.95539 0.92105 0.91037 0.90265 0.87765 0.91970 0.93763 0.89026 0.92716 0.90069 0.90581 0.91729 0.91214 0.92758 0.90955 0.92922 0.88773 0.85340 0.93339 0.85295 0.94149 0.95075 0.79383 0.93949 0.89533 0.89583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 9.32 71.98 0.67 -1.58 16 2 C -0.11 -1.22 5.02 30.59 0.15 -1.06 16 3 C -0.10 -1.55 1.57 -11.54 -0.02 -1.57 16 4 H 0.11 1.36 6.30 -2.39 -0.02 1.34 16 5 C -0.09 -1.51 2.78 30.60 0.09 -1.43 16 6 C -0.09 -0.97 2.77 -10.07 -0.03 -1.00 16 7 C -0.12 -1.32 5.42 31.67 0.17 -1.15 16 8 C -0.12 -1.27 6.91 31.89 0.22 -1.05 16 9 C -0.13 -1.51 6.83 31.67 0.22 -1.30 16 10 C -0.12 -1.53 6.46 31.32 0.20 -1.32 16 11 C 0.52 12.92 6.00 87.66 0.53 13.44 16 12 O -0.58 -19.83 15.48 -3.03 -0.05 -19.88 16 13 N -0.62 -14.83 3.01 -816.58 -2.46 -17.29 16 14 C 0.08 1.28 5.12 86.49 0.44 1.72 16 15 C 0.04 0.81 7.00 72.22 0.51 1.32 16 16 O -0.39 -13.47 10.33 -148.98 -1.54 -15.01 16 17 C 0.09 3.20 2.81 30.69 0.09 3.29 16 18 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 19 C 0.16 6.85 5.93 86.38 0.51 7.37 16 20 N -0.74 -40.14 5.55 -343.43 -1.91 -42.05 16 21 C -0.25 -14.55 9.99 84.04 0.84 -13.71 16 22 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 23 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 24 N -0.97 -61.30 13.06 21.65 0.28 -61.02 16 25 Si 0.98 47.32 29.55 68.60 2.03 49.34 16 26 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 27 H -0.29 -14.20 7.11 99.48 0.71 -13.50 16 28 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 29 C 0.09 2.80 5.94 86.35 0.51 3.31 16 30 H 0.03 0.52 7.48 -2.38 -0.02 0.50 16 31 H 0.06 0.90 6.05 -2.39 -0.01 0.88 16 32 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.08 0.75 6.03 -2.39 -0.01 0.73 16 34 H 0.10 0.62 6.61 -2.39 -0.02 0.60 16 35 H 0.06 1.23 6.04 -2.39 -0.01 1.21 16 36 H 0.04 0.96 7.99 -2.39 -0.02 0.94 16 37 H 0.09 0.78 6.40 -2.39 -0.02 0.76 16 38 H 0.05 0.74 7.78 -2.39 -0.02 0.72 16 39 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.05 0.78 7.67 -2.39 -0.02 0.76 16 46 H 0.09 1.37 8.08 -2.39 -0.02 1.35 16 47 H 0.13 1.24 5.28 -2.38 -0.01 1.23 16 48 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 49 H 0.13 2.28 8.14 -2.39 -0.02 2.26 16 50 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 51 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 52 H 0.37 21.78 7.67 -92.71 -0.71 21.07 16 53 H 0.25 15.35 8.31 -92.71 -0.77 14.58 16 54 H 0.09 2.80 7.06 -2.39 -0.02 2.79 16 55 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 Total: -1.00 -75.67 412.11 2.07 -73.59 By element: Atomic # 1 Polarization: 31.00 SS G_CDS: 0.15 Total: 31.15 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: 5.57 Total: 1.15 kcal Atomic # 7 Polarization: -116.27 SS G_CDS: -4.09 Total: -120.35 kcal Atomic # 8 Polarization: -33.30 SS G_CDS: -1.59 Total: -34.88 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 2.03 Total: 49.34 kcal Total: -75.67 2.07 -73.59 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700164396.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.960 kcal (2) G-P(sol) polarization free energy of solvation -75.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds