Wall clock time and date at job start Tue Mar 31 2020 22:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47034 * 2 1 4 4 H 1.08997 * 109.48299 * 304.97856 * 3 2 1 5 5 C 1.53100 * 109.49135 * 184.95140 * 3 2 1 6 6 C 1.53177 * 109.16443 * 182.40191 * 5 3 2 7 7 H 1.09004 * 109.61045 * 176.88987 * 6 5 3 8 8 C 1.50700 * 109.54521 * 297.11545 * 6 5 3 9 9 O 1.21280 * 119.99845 * 359.55547 * 8 6 5 10 10 N 1.34771 * 119.99917 * 179.55921 * 8 6 5 11 11 C 1.46504 * 120.00047 * 174.61068 * 10 8 6 12 12 C 1.52995 * 109.47354 * 64.36521 * 11 10 8 13 13 N 1.46502 * 109.47049 * 54.83794 * 12 11 10 14 14 C 1.36939 * 120.00079 * 184.97149 * 13 12 11 15 15 H 1.07999 * 119.99927 * 0.02562 * 14 13 12 16 16 C 1.38812 * 119.99903 * 179.97438 * 14 13 12 17 17 N 1.31619 * 120.00256 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99654 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47016 * 60.00824 * 18 16 14 20 20 H 1.48504 * 109.47179 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47642 * 300.00772 * 18 16 14 22 22 C 1.53001 * 109.47140 * 184.37124 * 11 10 8 23 23 C 1.52994 * 109.47165 * 59.99284 * 22 11 10 24 24 C 1.52997 * 109.47336 * 60.00519 * 23 22 11 25 25 C 1.53004 * 109.46921 * 299.99840 * 24 23 22 26 26 C 1.52995 * 109.47310 * 59.99749 * 25 24 23 27 27 C 1.53179 * 109.03372 * 56.98101 * 6 5 3 28 28 C 1.53090 * 109.16621 * 303.01872 * 27 6 5 29 29 O 1.42905 * 109.41632 * 57.60917 * 28 27 6 30 30 H 1.08993 * 109.47533 * 59.99582 * 1 2 3 31 31 H 1.09003 * 109.46776 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46598 * 299.99534 * 1 2 3 33 33 H 1.09000 * 109.47120 * 240.00398 * 2 1 3 34 34 H 1.08993 * 109.47533 * 120.00418 * 2 1 3 35 35 H 1.08998 * 109.51796 * 62.49786 * 5 3 2 36 36 H 1.08993 * 109.52056 * 302.31327 * 5 3 2 37 37 H 0.97000 * 119.99898 * 354.60255 * 10 8 6 38 38 H 1.09001 * 109.46775 * 174.83685 * 12 11 10 39 39 H 1.08997 * 109.47292 * 294.83697 * 12 11 10 40 40 H 0.97002 * 120.00242 * 4.97294 * 13 12 11 41 41 H 0.96997 * 119.99914 * 179.97438 * 17 16 14 42 42 H 1.08999 * 109.46862 * 299.99536 * 22 11 10 43 43 H 1.08997 * 109.46924 * 180.02562 * 22 11 10 44 44 H 1.08997 * 109.47818 * 300.00210 * 23 22 11 45 45 H 1.08999 * 109.47202 * 179.97438 * 23 22 11 46 46 H 1.09000 * 109.47418 * 59.99137 * 24 23 22 47 47 H 1.08997 * 109.47507 * 179.97438 * 24 23 22 48 48 H 1.08999 * 109.47213 * 179.97438 * 25 24 23 49 49 H 1.09008 * 109.46824 * 299.99891 * 25 24 23 50 50 H 1.08997 * 109.47496 * 60.00109 * 26 25 24 51 51 H 1.08999 * 109.47527 * 180.02562 * 26 25 24 52 52 H 1.09001 * 109.52007 * 62.92319 * 27 6 5 53 53 H 1.09002 * 109.52188 * 183.04832 * 27 6 5 54 54 H 1.08993 * 109.48334 * 177.59045 * 28 27 6 55 55 H 1.09000 * 109.47921 * 297.62652 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6058 1.9816 -0.8419 5 6 3.5659 1.4448 -0.1246 6 6 4.0732 2.8889 -0.0634 7 1 5.1627 2.8956 -0.0960 8 6 3.5289 3.6645 -1.2353 9 8 2.8127 3.1157 -2.0457 10 7 3.8382 4.9679 -1.3828 11 6 3.4079 5.6917 -2.5817 12 6 1.8797 5.7551 -2.6182 13 7 1.3852 6.3407 -1.3697 14 6 0.0385 6.4056 -1.1301 15 1 -0.6590 6.0248 -1.8614 16 6 -0.4299 6.9600 0.0532 17 7 0.4202 7.4237 0.9446 18 14 -2.2670 7.0492 0.3796 19 1 -2.8377 5.6782 0.3753 20 1 -2.5046 7.6804 1.7027 21 1 -2.9193 7.8602 -0.6796 22 6 3.9767 7.1118 -2.5517 23 6 5.5049 7.0483 -2.5151 24 6 6.0152 6.3209 -3.7606 25 6 5.4464 4.9008 -3.7906 26 6 3.9182 4.9642 -3.8272 27 6 3.5955 3.5313 1.2425 28 6 2.0686 3.4484 1.3143 29 8 1.6621 2.0815 1.2211 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3632 0.5138 0.8901 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 3.8543 0.9974 -1.0757 36 1 3.9991 0.8715 0.6949 37 1 4.3456 5.4268 -0.6951 38 1 1.5617 6.3710 -3.4594 39 1 1.4770 4.7487 -2.7321 40 1 2.0117 6.6824 -0.7127 41 1 0.0928 7.8114 1.7712 42 1 3.6133 7.6301 -1.6644 43 1 3.6562 7.6504 -3.4434 44 1 5.8251 6.5098 -1.6231 45 1 5.9102 8.0600 -2.4942 46 1 5.6951 6.8593 -4.6526 47 1 7.1039 6.2761 -3.7347 48 1 5.8096 4.3827 -4.6782 49 1 5.7665 4.3623 -2.8985 50 1 3.5981 5.5027 -4.7191 51 1 3.5130 3.9525 -3.8481 52 1 4.0294 3.0001 2.0897 53 1 3.9062 4.5757 1.2696 54 1 1.7260 3.8656 2.2612 55 1 1.6347 4.0137 0.4896 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700515738.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:28 Heat of formation + Delta-G solvation = -117.769785 kcal Electronic energy + Delta-G solvation = -33481.617834 eV Core-core repulsion = 29516.693268 eV Total energy + Delta-G solvation = -3964.924567 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.99198 -40.35949 -38.44092 -36.38176 -35.22101 -34.57186 -34.42808 -32.90368 -31.69665 -30.83789 -30.53831 -26.99768 -26.74081 -24.69052 -24.61645 -23.71865 -23.27035 -22.13025 -21.71764 -20.57984 -19.97414 -19.21165 -17.77643 -17.29785 -17.22075 -16.83245 -16.54750 -16.15907 -16.00190 -15.44585 -15.38460 -15.13468 -14.96346 -14.66966 -14.63593 -14.52630 -14.42690 -14.10696 -13.91423 -13.49736 -13.25590 -13.19311 -13.09905 -12.90320 -12.85917 -12.73808 -12.71593 -12.57211 -12.51337 -12.15175 -12.05370 -11.97460 -11.86774 -11.82706 -11.56864 -11.46819 -11.24889 -11.10716 -11.00151 -10.92521 -10.45151 -10.01522 -9.73330 -8.90394 -7.93281 -5.17198 1.41491 1.43618 1.48845 1.84808 2.36526 2.54878 2.91761 3.39444 3.61105 3.68548 3.79044 3.83829 3.89690 3.90845 3.99906 4.12165 4.15417 4.27754 4.28580 4.33936 4.47870 4.49628 4.54597 4.57613 4.62070 4.63768 4.68668 4.73103 4.82041 4.87810 4.90224 4.92480 4.95777 4.96748 5.03422 5.05422 5.13081 5.15738 5.17737 5.20287 5.22306 5.27249 5.32739 5.35055 5.39963 5.44158 5.47097 5.51422 5.55535 5.84107 6.29235 6.39204 6.78255 7.37799 7.50151 8.11955 8.42148 9.28491 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.007253 B = 0.006625 C = 0.004059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3859.316714 B = 4225.612073 C = 6896.941580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.107 4.107 3 C 0.074 3.926 4 H 0.045 0.955 5 C -0.118 4.118 6 C -0.107 4.107 7 H 0.133 0.867 8 C 0.519 3.481 9 O -0.564 6.564 10 N -0.700 5.700 11 C 0.186 3.814 12 C 0.144 3.856 13 N -0.720 5.720 14 C -0.240 4.240 15 H 0.054 0.946 16 C -0.057 4.057 17 N -0.952 5.952 18 Si 0.954 3.046 19 H -0.291 1.291 20 H -0.289 1.289 21 H -0.282 1.282 22 C -0.113 4.113 23 C -0.111 4.111 24 C -0.113 4.113 25 C -0.104 4.104 26 C -0.123 4.123 27 C -0.130 4.130 28 C 0.063 3.937 29 O -0.396 6.396 30 H 0.035 0.965 31 H 0.074 0.926 32 H 0.041 0.959 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.403 0.597 38 H 0.008 0.992 39 H 0.015 0.985 40 H 0.378 0.622 41 H 0.250 0.750 42 H 0.053 0.947 43 H 0.071 0.929 44 H 0.068 0.932 45 H 0.074 0.926 46 H 0.062 0.938 47 H 0.078 0.922 48 H 0.068 0.932 49 H 0.059 0.941 50 H 0.067 0.933 51 H 0.061 0.939 52 H 0.101 0.899 53 H 0.082 0.918 54 H 0.081 0.919 55 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.546 -9.109 -3.809 19.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.144 4.144 3 C 0.017 3.983 4 H 0.063 0.937 5 C -0.156 4.156 6 C -0.128 4.128 7 H 0.151 0.849 8 C 0.306 3.694 9 O -0.444 6.444 10 N -0.351 5.351 11 C 0.100 3.900 12 C 0.016 3.984 13 N -0.363 5.363 14 C -0.372 4.372 15 H 0.072 0.928 16 C -0.250 4.250 17 N -0.603 5.603 18 Si 0.784 3.216 19 H -0.218 1.218 20 H -0.215 1.215 21 H -0.208 1.208 22 C -0.151 4.151 23 C -0.149 4.149 24 C -0.150 4.150 25 C -0.142 4.142 26 C -0.162 4.162 27 C -0.168 4.168 28 C -0.014 4.014 29 O -0.316 6.316 30 H 0.054 0.946 31 H 0.093 0.907 32 H 0.060 0.940 33 H 0.107 0.893 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.114 0.886 37 H 0.239 0.761 38 H 0.026 0.974 39 H 0.033 0.967 40 H 0.212 0.788 41 H 0.059 0.941 42 H 0.072 0.928 43 H 0.090 0.910 44 H 0.086 0.914 45 H 0.093 0.907 46 H 0.081 0.919 47 H 0.097 0.903 48 H 0.086 0.914 49 H 0.078 0.922 50 H 0.085 0.915 51 H 0.080 0.920 52 H 0.120 0.880 53 H 0.101 0.899 54 H 0.099 0.901 55 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 15.773 -9.597 -4.300 18.958 hybrid contribution -1.432 0.979 0.560 1.823 sum 14.341 -8.619 -3.741 17.145 Atomic orbital electron populations 1.21687 0.96258 1.01857 1.00743 1.21513 0.96004 0.93593 1.03312 1.22429 0.95029 0.94493 0.86378 0.93745 1.21924 0.95158 0.94801 1.03685 1.21501 1.03310 0.95561 0.92441 0.84911 1.20843 0.79498 0.82363 0.86649 1.90578 1.37372 1.70274 1.46146 1.45847 1.56798 1.10100 1.22321 1.20353 0.91641 0.92293 0.85719 1.21118 0.93687 0.95192 0.88406 1.42147 1.03256 1.72265 1.18656 1.19349 0.85135 1.31729 1.00989 0.92836 1.25188 1.00515 1.02315 0.97024 1.69724 1.33518 1.47403 1.09655 0.85519 0.82029 0.77180 0.76877 1.21829 1.21469 1.20793 1.21697 0.97093 0.93854 1.02496 1.21511 0.93038 1.01322 0.98988 1.21519 1.00622 0.95005 0.97844 1.21399 0.93259 0.97670 1.01879 1.21812 0.97369 1.01002 0.95981 1.22065 0.95097 1.02261 0.97388 1.22406 0.95386 0.82451 1.01174 1.87814 1.79783 1.24636 1.39364 0.94623 0.90677 0.94003 0.89340 0.90234 0.90082 0.88648 0.76111 0.97425 0.96739 0.78820 0.94087 0.92830 0.91004 0.91354 0.90686 0.91926 0.90313 0.91373 0.92242 0.91469 0.91998 0.88040 0.89947 0.90118 0.95794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.24 9.81 71.98 0.71 -3.53 16 2 C -0.11 -2.83 5.64 30.59 0.17 -2.66 16 3 C 0.07 2.41 2.35 30.63 0.07 2.48 16 4 H 0.04 1.84 5.82 -2.39 -0.01 1.83 16 5 C -0.12 -2.94 4.56 30.69 0.14 -2.80 16 6 C -0.11 -2.63 3.05 -11.42 -0.03 -2.66 16 7 H 0.13 2.25 8.14 -2.38 -0.02 2.23 16 8 C 0.52 16.38 5.15 87.66 0.45 16.83 16 9 O -0.56 -21.93 10.15 -3.03 -0.03 -21.96 16 10 N -0.70 -20.48 3.40 -422.92 -1.44 -21.92 16 11 C 0.19 5.90 0.32 3.60 0.00 5.90 16 12 C 0.14 6.25 4.94 86.38 0.43 6.68 16 13 N -0.72 -36.44 5.19 -343.46 -1.78 -38.22 16 14 C -0.24 -13.88 9.99 84.03 0.84 -13.04 16 15 H 0.05 3.16 7.83 -2.91 -0.02 3.14 16 16 C -0.06 -3.30 5.50 84.86 0.47 -2.84 16 17 N -0.95 -56.35 13.06 21.65 0.28 -56.07 16 18 Si 0.95 47.90 29.55 68.60 2.03 49.92 16 19 H -0.29 -14.72 7.11 99.48 0.71 -14.02 16 20 H -0.29 -14.29 7.11 99.48 0.71 -13.59 16 21 H -0.28 -13.75 7.11 99.48 0.71 -13.04 16 22 C -0.11 -3.16 4.64 30.59 0.14 -3.02 16 23 C -0.11 -2.19 5.75 30.59 0.18 -2.02 16 24 C -0.11 -1.97 5.92 30.59 0.18 -1.79 16 25 C -0.10 -2.17 5.77 30.59 0.18 -1.99 16 26 C -0.12 -3.44 4.45 30.59 0.14 -3.31 16 27 C -0.13 -3.46 5.56 30.68 0.17 -3.29 16 28 C 0.06 2.36 6.62 72.01 0.48 2.83 16 29 O -0.40 -14.67 9.94 -148.98 -1.48 -16.15 16 30 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.04 1.34 7.82 -2.39 -0.02 1.32 16 33 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.08 1.95 8.02 -2.39 -0.02 1.93 16 36 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.40 10.29 6.72 -92.71 -0.62 9.67 16 38 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 39 H 0.01 0.73 6.46 -2.39 -0.02 0.71 16 40 H 0.38 19.38 6.46 -92.71 -0.60 18.78 16 41 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 42 H 0.05 1.77 7.09 -2.39 -0.02 1.75 16 43 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 44 H 0.07 1.24 6.95 -2.39 -0.02 1.23 16 45 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 47 H 0.08 1.09 8.14 -2.39 -0.02 1.08 16 48 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 49 H 0.06 1.24 7.53 -2.38 -0.02 1.22 16 50 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 51 H 0.06 2.06 6.04 -2.39 -0.01 2.05 16 52 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 53 H 0.08 2.10 7.39 -2.39 -0.02 2.08 16 54 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 55 H 0.02 1.13 7.38 -2.39 -0.02 1.12 16 Total: -1.00 -69.78 404.57 1.92 -67.85 By element: Atomic # 1 Polarization: 45.12 SS G_CDS: -0.35 Total: 44.76 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: 4.70 Total: -8.23 kcal Atomic # 7 Polarization: -113.26 SS G_CDS: -2.94 Total: -116.20 kcal Atomic # 8 Polarization: -36.60 SS G_CDS: -1.51 Total: -38.11 kcal Atomic # 14 Polarization: 47.90 SS G_CDS: 2.03 Total: 49.92 kcal Total: -69.78 1.92 -67.85 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700515738.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.916 kcal (2) G-P(sol) polarization free energy of solvation -69.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds