Wall clock time and date at job start Tue Mar 31 2020 23:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47137 * 2 1 4 4 H 1.08992 * 109.47470 * 54.99205 * 3 2 1 5 5 C 1.53006 * 109.46950 * 294.99726 * 3 2 1 6 6 C 1.52995 * 109.47256 * 174.99984 * 3 2 1 7 7 C 1.50697 * 109.47331 * 184.99806 * 6 3 2 8 8 O 1.21285 * 119.99886 * 359.97438 * 7 6 3 9 9 N 1.34774 * 120.00521 * 179.97438 * 7 6 3 10 10 C 1.46927 * 120.60225 * 180.02562 * 9 7 6 11 11 C 1.53286 * 108.72600 * 234.18539 * 10 9 7 12 12 C 1.52402 * 109.44479 * 306.32105 * 11 10 9 13 13 C 1.53980 * 110.24777 * 182.25001 * 12 11 10 14 14 O 1.44547 * 104.69853 * 142.15304 * 13 12 11 15 15 C 1.44472 * 105.36026 * 319.97840 * 14 13 12 16 16 H 1.09000 * 110.36814 * 281.34393 * 15 14 13 17 17 C 1.53001 * 110.36819 * 159.01359 * 15 14 13 18 18 N 1.46502 * 109.46924 * 66.45805 * 17 15 14 19 19 C 1.36942 * 119.99891 * 180.02562 * 18 17 15 20 20 H 1.07999 * 119.99697 * 359.97438 * 19 18 17 21 21 C 1.38809 * 119.99890 * 179.97438 * 19 18 17 22 22 N 1.31618 * 120.00046 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99966 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47158 * 89.99480 * 23 21 19 25 25 H 1.48504 * 109.47009 * 210.00087 * 23 21 19 26 26 H 1.48506 * 109.46727 * 329.99538 * 23 21 19 27 27 C 1.53986 * 110.28186 * 297.22557 * 12 11 10 28 28 C 1.52408 * 111.02292 * 59.76825 * 12 11 10 29 29 C 1.46934 * 120.59188 * 359.97424 * 9 7 6 30 30 H 1.09003 * 109.46942 * 60.00604 * 1 2 3 31 31 H 1.09004 * 109.46680 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47158 * 300.00195 * 1 2 3 33 33 H 1.09000 * 109.47387 * 239.99123 * 2 1 3 34 34 H 1.09003 * 109.46942 * 119.99396 * 2 1 3 35 35 H 1.08996 * 109.47044 * 59.99675 * 5 3 2 36 36 H 1.08999 * 109.47295 * 180.02562 * 5 3 2 37 37 H 1.09007 * 109.47045 * 300.00261 * 5 3 2 38 38 H 1.09001 * 109.47490 * 64.99791 * 6 3 2 39 39 H 1.09000 * 109.47363 * 304.99734 * 6 3 2 40 40 H 1.08995 * 109.59981 * 114.41142 * 10 9 7 41 41 H 1.09008 * 109.59109 * 353.95386 * 10 9 7 42 42 H 1.09005 * 109.47539 * 66.31638 * 11 10 9 43 43 H 1.08999 * 109.47135 * 186.32533 * 11 10 9 44 44 H 1.09004 * 110.39497 * 260.95145 * 13 12 11 45 45 H 1.08997 * 110.39648 * 23.34371 * 13 12 11 46 46 H 1.09005 * 109.47183 * 186.45518 * 17 15 14 47 47 H 1.08998 * 109.47202 * 306.45679 * 17 15 14 48 48 H 0.96995 * 120.00352 * 0.02562 * 18 17 15 49 49 H 0.97002 * 120.00053 * 180.02562 * 22 21 19 50 50 H 1.08993 * 110.54490 * 0.24146 * 27 12 11 51 51 H 1.09001 * 110.54309 * 123.03513 * 27 12 11 52 52 H 1.08998 * 109.47608 * 60.22467 * 28 12 11 53 53 H 1.09002 * 109.47014 * 180.23643 * 28 12 11 54 54 H 1.08997 * 109.59478 * 6.04315 * 29 9 7 55 55 H 1.09004 * 109.72235 * 245.65977 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8416 5 6 1.6353 2.1265 -1.3074 6 6 3.5648 1.4443 0.1257 7 6 4.0570 2.8633 0.2492 8 8 3.2660 3.7827 0.2373 9 7 5.3760 3.1108 0.3728 10 6 5.8702 4.4891 0.4947 11 6 6.9296 4.7295 -0.5868 12 6 8.0024 3.6509 -0.4948 13 6 9.1062 3.9069 -1.5374 14 8 10.3345 3.5428 -0.8681 15 6 10.1936 4.0329 0.4836 16 1 10.3821 5.1059 0.5197 17 6 11.1484 3.2913 1.4213 18 7 12.5318 3.6252 1.0734 19 6 13.5675 3.0755 1.7809 20 1 13.3644 2.3963 2.5956 21 6 14.8782 3.3914 1.4508 22 7 15.1257 4.2188 0.4576 23 14 16.2910 2.6423 2.4164 24 1 16.7013 1.3640 1.7819 25 1 17.4400 3.5830 2.4228 26 1 15.8547 2.3844 3.8123 27 6 8.7252 3.7316 0.8625 28 6 7.4018 2.2641 -0.6919 29 6 6.3456 2.0070 0.3894 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8934 -0.5140 -0.8899 34 1 1.8934 -0.5138 0.8901 35 1 0.5490 2.1251 -1.3971 36 1 1.9990 3.1540 -1.3077 37 1 2.0700 1.5874 -2.1493 38 1 4.0030 0.9836 -0.7596 39 1 3.8571 0.8801 1.0113 40 1 6.3143 4.6326 1.4796 41 1 5.0440 5.1870 0.3586 42 1 6.4602 4.6923 -1.5700 43 1 7.3848 5.7086 -0.4383 44 1 8.9520 3.2798 -2.4156 45 1 9.1252 4.9594 -1.8199 46 1 10.9508 3.5892 2.4511 47 1 10.9971 2.2168 1.3185 48 1 12.7142 4.2355 0.3419 49 1 16.0417 4.4393 0.2267 50 1 8.3130 4.5386 1.4680 51 1 8.6539 2.7809 1.3909 52 1 6.9364 2.2061 -1.6759 53 1 8.1886 1.5135 -0.6172 54 1 5.8332 1.0672 0.1839 55 1 6.8271 1.9549 1.3659 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700624881.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:40 Heat of formation + Delta-G solvation = -112.133813 kcal Electronic energy + Delta-G solvation = -30505.850542 eV Core-core repulsion = 26541.170369 eV Total energy + Delta-G solvation = -3964.680173 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.86543 -40.60637 -38.18123 -37.08216 -36.38363 -34.37971 -33.50386 -32.49954 -31.37340 -31.00338 -29.07916 -27.88462 -27.01504 -25.17920 -24.50770 -24.35763 -23.67990 -22.17154 -21.30153 -20.47830 -19.23176 -19.12240 -18.11822 -17.28128 -17.01837 -16.75429 -16.50393 -16.34041 -16.14494 -15.83994 -15.43496 -15.32955 -15.09019 -14.94486 -14.72461 -14.56579 -14.18710 -14.00855 -13.76180 -13.49910 -13.38703 -13.31109 -13.09291 -12.95101 -12.79508 -12.76457 -12.71424 -12.39737 -12.23200 -12.19539 -12.17559 -12.01870 -11.86725 -11.70635 -11.52678 -11.50742 -11.38168 -11.32455 -11.28168 -10.96578 -10.63120 -10.55207 -9.58876 -8.99615 -7.93501 -5.23052 1.47219 1.50120 1.58366 1.67909 2.04888 2.56579 3.00892 3.40077 3.45517 3.53513 3.59683 3.80575 3.85397 3.91137 4.00058 4.05678 4.10543 4.19609 4.26548 4.31598 4.35443 4.45727 4.49439 4.52384 4.61362 4.63972 4.66967 4.67816 4.71855 4.75217 4.79804 4.82896 4.84493 4.86106 4.92952 4.96935 5.01681 5.03950 5.05641 5.16002 5.19582 5.21431 5.25639 5.28611 5.33170 5.35959 5.48782 5.52257 5.58341 5.63324 6.04743 6.27792 6.46233 7.23480 7.33575 8.09990 8.33160 9.30331 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.025328 B = 0.001949 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.245664 B =14364.582871 C =14873.420186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.115 4.115 3 C -0.074 4.074 4 H 0.057 0.943 5 C -0.150 4.150 6 C -0.133 4.133 7 C 0.509 3.491 8 O -0.581 6.581 9 N -0.609 5.609 10 C 0.111 3.889 11 C -0.111 4.111 12 C -0.079 4.079 13 C 0.046 3.954 14 O -0.391 6.391 15 C 0.074 3.926 16 H 0.055 0.945 17 C 0.157 3.843 18 N -0.745 5.745 19 C -0.247 4.247 20 H 0.079 0.921 21 C -0.079 4.079 22 N -0.971 5.971 23 Si 0.978 3.022 24 H -0.287 1.287 25 H -0.295 1.295 26 H -0.266 1.266 27 C -0.127 4.127 28 C -0.115 4.115 29 C 0.105 3.895 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.048 0.952 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.055 0.945 36 H 0.046 0.954 37 H 0.056 0.944 38 H 0.112 0.888 39 H 0.114 0.886 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.069 0.931 43 H 0.081 0.919 44 H 0.097 0.903 45 H 0.059 0.941 46 H 0.041 0.959 47 H 0.024 0.976 48 H 0.373 0.627 49 H 0.251 0.749 50 H 0.091 0.909 51 H 0.088 0.912 52 H 0.076 0.924 53 H 0.080 0.920 54 H 0.112 0.888 55 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.985 -7.548 -2.110 30.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.153 4.153 3 C -0.093 4.093 4 H 0.075 0.925 5 C -0.208 4.208 6 C -0.173 4.173 7 C 0.300 3.700 8 O -0.461 6.461 9 N -0.342 5.342 10 C -0.011 4.011 11 C -0.149 4.149 12 C -0.079 4.079 13 C -0.031 4.031 14 O -0.311 6.311 15 C 0.016 3.984 16 H 0.073 0.927 17 C 0.031 3.969 18 N -0.387 5.387 19 C -0.379 4.379 20 H 0.096 0.904 21 C -0.271 4.271 22 N -0.622 5.622 23 Si 0.806 3.194 24 H -0.214 1.214 25 H -0.222 1.222 26 H -0.191 1.191 27 C -0.165 4.165 28 C -0.154 4.154 29 C -0.017 4.017 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.130 0.870 39 H 0.132 0.868 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.088 0.912 43 H 0.100 0.900 44 H 0.115 0.885 45 H 0.077 0.923 46 H 0.059 0.941 47 H 0.042 0.958 48 H 0.204 0.796 49 H 0.059 0.941 50 H 0.110 0.890 51 H 0.107 0.893 52 H 0.094 0.906 53 H 0.098 0.902 54 H 0.131 0.869 55 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -30.152 -7.294 -2.051 31.090 hybrid contribution 1.214 0.498 0.020 1.313 sum -28.938 -6.796 -2.031 29.795 Atomic orbital electron populations 1.21824 0.95902 1.01889 1.01668 1.21564 0.96051 0.94828 1.02850 1.20887 0.93202 0.96763 0.98480 0.92481 1.21938 1.01273 1.00699 0.96856 1.21862 0.97217 0.92299 1.05903 1.21288 0.81442 0.92618 0.74687 1.90646 1.55165 1.48179 1.52143 1.48240 1.06116 1.07843 1.72000 1.21594 0.97023 0.83399 0.99112 1.21774 0.95162 0.98370 0.99566 1.21395 0.95021 0.97018 0.94508 1.23621 0.82945 1.00414 0.96117 1.89294 1.38467 1.79459 1.23850 1.23185 0.95641 0.96959 0.82622 0.92685 1.20923 0.83427 0.96883 0.95663 1.42534 1.01113 1.55460 1.39581 1.19693 0.86831 1.20701 1.10667 0.90350 1.25644 1.00045 1.01195 1.00230 1.69852 1.19134 1.40442 1.32752 0.85083 0.78682 0.77126 0.78509 1.21430 1.22163 1.19100 1.23024 0.92072 1.03954 0.97464 1.21840 0.98316 0.95371 0.99823 1.21995 0.89991 0.89857 0.99815 0.92767 0.92002 0.93289 0.91008 0.91024 0.92602 0.93473 0.92466 0.86962 0.86838 0.90599 0.90370 0.91229 0.90024 0.88469 0.92310 0.94124 0.95819 0.79576 0.94071 0.89007 0.89350 0.90567 0.90158 0.86944 0.90212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 9.67 71.98 0.70 -0.82 16 2 C -0.12 -1.05 5.40 30.59 0.17 -0.89 16 3 C -0.07 -0.98 2.04 -10.79 -0.02 -1.00 16 4 H 0.06 0.99 7.95 -2.39 -0.02 0.97 16 5 C -0.15 -2.32 8.69 71.98 0.63 -1.70 16 6 C -0.13 -1.47 3.52 29.85 0.11 -1.36 16 7 C 0.51 9.23 7.41 87.66 0.65 9.88 16 8 O -0.58 -15.16 13.37 -3.05 -0.04 -15.20 16 9 N -0.61 -9.50 2.96 -818.44 -2.42 -11.92 16 10 C 0.11 1.88 6.12 86.39 0.53 2.41 16 11 C -0.11 -1.80 4.63 30.49 0.14 -1.66 16 12 C -0.08 -1.45 0.68 -51.91 -0.04 -1.49 16 13 C 0.05 1.11 6.72 72.31 0.49 1.59 16 14 O -0.39 -13.91 11.33 -148.98 -1.69 -15.60 16 15 C 0.07 2.40 3.34 31.14 0.10 2.50 16 16 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 17 C 0.16 6.37 5.87 86.38 0.51 6.87 16 18 N -0.74 -39.70 5.59 -343.44 -1.92 -41.62 16 19 C -0.25 -14.21 9.99 84.03 0.84 -13.37 16 20 H 0.08 4.26 7.83 -2.91 -0.02 4.23 16 21 C -0.08 -4.67 5.50 84.86 0.47 -4.21 16 22 N -0.97 -61.43 13.06 21.65 0.28 -61.15 16 23 Si 0.98 46.85 29.55 68.60 2.03 48.88 16 24 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 25 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 26 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 27 C -0.13 -2.74 4.97 31.47 0.16 -2.58 16 28 C -0.12 -1.68 4.63 30.51 0.14 -1.54 16 29 C 0.11 1.20 6.03 86.40 0.52 1.72 16 30 H 0.05 0.56 6.57 -2.39 -0.02 0.54 16 31 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 32 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.05 0.81 6.56 -2.39 -0.02 0.79 16 36 H 0.05 1.00 5.95 -2.39 -0.01 0.98 16 37 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 38 H 0.11 0.84 7.70 -2.39 -0.02 0.82 16 39 H 0.11 0.80 7.93 -2.39 -0.02 0.78 16 40 H 0.08 1.20 6.86 -2.39 -0.02 1.18 16 41 H 0.08 1.58 7.00 -2.38 -0.02 1.56 16 42 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 43 H 0.08 1.30 8.13 -2.39 -0.02 1.28 16 44 H 0.10 2.10 7.85 -2.38 -0.02 2.08 16 45 H 0.06 1.38 7.83 -2.39 -0.02 1.36 16 46 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 47 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.37 21.62 7.67 -92.71 -0.71 20.91 16 49 H 0.25 15.29 8.31 -92.71 -0.77 14.52 16 50 H 0.09 1.71 6.59 -2.39 -0.02 1.69 16 51 H 0.09 1.76 6.33 -2.39 -0.02 1.75 16 52 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 53 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 54 H 0.11 0.72 5.92 -2.39 -0.01 0.71 16 55 H 0.08 0.89 6.87 -2.38 -0.02 0.88 16 Total: -1.00 -74.65 411.81 2.47 -72.19 By element: Atomic # 1 Polarization: 29.89 SS G_CDS: 0.15 Total: 30.04 kcal Atomic # 6 Polarization: -11.70 SS G_CDS: 6.08 Total: -5.63 kcal Atomic # 7 Polarization: -110.63 SS G_CDS: -4.06 Total: -114.69 kcal Atomic # 8 Polarization: -29.07 SS G_CDS: -1.73 Total: -30.80 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.88 kcal Total: -74.65 2.47 -72.19 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700624881.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.946 kcal (2) G-P(sol) polarization free energy of solvation -74.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds