Wall clock time and date at job start Tue Mar 31 2020 22:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42905 * 109.47150 * 2 1 4 4 C 1.42890 * 114.00227 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47190 * 29.99722 * 4 3 2 6 6 C 1.50703 * 109.47256 * 270.00260 * 4 3 2 7 7 O 1.21284 * 120.00022 * 354.99429 * 6 4 3 8 8 N 1.34776 * 120.00116 * 175.00448 * 6 4 3 9 9 C 1.46497 * 120.00132 * 180.02562 * 8 6 4 10 10 H 1.09002 * 110.64207 * 323.30207 * 9 8 6 11 11 C 1.55159 * 110.72436 * 86.44742 * 9 8 6 12 12 C 1.54908 * 101.58385 * 153.86834 * 11 9 8 13 13 N 1.47429 * 104.82979 * 322.98878 * 12 11 9 14 14 C 1.36940 * 125.64788 * 204.16160 * 13 12 11 15 15 H 1.07995 * 119.99781 * 168.24875 * 14 13 12 16 16 C 1.38804 * 120.00005 * 348.25324 * 14 13 12 17 17 N 1.31623 * 120.00186 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99950 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47330 * 89.99959 * 18 16 14 20 20 H 1.48504 * 109.47423 * 210.00125 * 18 16 14 21 21 H 1.48497 * 109.47379 * 329.99987 * 18 16 14 22 22 C 1.47020 * 108.70242 * 24.13079 * 13 12 11 23 23 H 1.08996 * 109.88353 * 239.52076 * 22 13 12 24 24 C 1.53000 * 109.88360 * 118.35836 * 22 13 12 25 25 C 1.52997 * 109.47299 * 177.17395 * 24 22 13 26 26 C 1.53002 * 109.47449 * 149.99906 * 4 3 2 27 27 C 1.54965 * 110.76629 * 186.63353 * 26 4 3 28 28 C 1.54260 * 104.15701 * 156.22464 * 27 26 4 29 29 C 1.53875 * 106.64254 * 336.44280 * 28 27 26 30 30 C 1.54266 * 106.59708 * 359.97438 * 29 28 27 31 31 H 1.09003 * 109.46457 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47007 * 299.99761 * 1 2 3 33 33 H 1.08999 * 109.46809 * 60.00446 * 1 2 3 34 34 H 1.08997 * 109.47274 * 239.99835 * 2 1 3 35 35 H 1.08999 * 109.46809 * 119.99554 * 2 1 3 36 36 H 0.97002 * 120.00009 * 359.97438 * 8 6 4 37 37 H 1.09000 * 111.00488 * 271.94175 * 11 9 8 38 38 H 1.08992 * 111.00358 * 35.75312 * 11 9 8 39 39 H 1.09000 * 110.36918 * 81.82638 * 12 11 9 40 40 H 1.08995 * 110.36836 * 204.15376 * 12 11 9 41 41 H 0.96995 * 119.99960 * 180.02562 * 17 16 14 42 42 H 1.09000 * 109.47198 * 297.16932 * 24 22 13 43 43 H 1.08996 * 109.47509 * 57.16803 * 24 22 13 44 44 H 1.09006 * 109.46951 * 305.01352 * 25 24 22 45 45 H 1.08993 * 109.47719 * 65.01383 * 25 24 22 46 46 H 1.09002 * 109.47231 * 185.02153 * 25 24 22 47 47 H 1.09004 * 110.66670 * 63.23469 * 26 4 3 48 48 H 1.08996 * 110.47867 * 37.57030 * 27 26 4 49 49 H 1.09005 * 110.52557 * 274.89993 * 27 26 4 50 50 H 1.09001 * 110.03083 * 217.13472 * 28 27 26 51 51 H 1.08999 * 110.04045 * 95.75579 * 28 27 26 52 52 H 1.08999 * 110.03296 * 119.26104 * 29 28 27 53 53 H 1.09003 * 110.03019 * 240.64457 * 29 28 27 54 54 H 1.09003 * 110.48696 * 142.28679 * 30 29 28 55 55 H 1.08996 * 110.48624 * 264.93132 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.8636 0.6016 -0.5129 6 6 3.9311 1.5000 1.4216 7 8 3.1416 1.5295 2.3418 8 7 5.2557 1.5031 1.6699 9 6 5.7420 1.5412 3.0513 10 1 5.0999 2.1707 3.6675 11 6 5.8350 0.1088 3.6404 12 6 6.9354 0.2858 4.7163 13 7 7.8990 1.2282 4.1190 14 6 9.2220 1.3371 4.4552 15 1 9.8900 1.9188 3.8374 16 6 9.7044 0.6997 5.5900 17 7 8.8901 -0.0089 6.3432 18 14 11.5092 0.8476 6.0483 19 1 11.7008 2.0260 6.9315 20 1 11.9412 -0.3812 6.7617 21 1 12.3207 1.0155 4.8160 22 6 7.2045 2.0314 3.1021 23 1 7.6772 1.8885 2.1304 24 6 7.2443 3.5106 3.4908 25 6 6.5813 4.3446 2.3927 26 6 3.8410 2.7457 -0.7207 27 6 5.3803 2.8168 -0.8841 28 6 5.5887 3.7565 -2.0896 29 6 4.2926 3.7056 -2.9173 30 6 3.3410 2.7359 -2.1866 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 5.8872 1.4793 0.9340 37 1 4.8896 -0.1892 4.0939 38 1 6.1437 -0.6074 2.8791 39 1 6.5104 0.7050 5.6283 40 1 7.4183 -0.6686 4.9256 41 1 9.2271 -0.4540 7.1364 42 1 6.7088 3.6542 4.4292 43 1 8.2804 3.8268 3.6117 44 1 7.0604 4.1331 1.4366 45 1 5.5230 4.0909 2.3326 46 1 6.6884 5.4039 2.6262 47 1 3.4657 3.6209 -0.1903 48 1 5.7874 1.8282 -1.0962 49 1 5.8407 3.2362 0.0106 50 1 6.4297 3.4113 -2.6911 51 1 5.7707 4.7738 -1.7431 52 1 3.8450 4.6979 -2.9717 53 1 4.5047 3.3364 -3.9208 54 1 2.3135 3.0958 -2.2416 55 1 3.4184 1.7343 -2.6095 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707197087.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:47 Heat of formation + Delta-G solvation = -97.743105 kcal Electronic energy + Delta-G solvation = -31993.293877 eV Core-core repulsion = 28029.237732 eV Total energy + Delta-G solvation = -3964.056145 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.55538 -39.87060 -38.71633 -38.06210 -35.61862 -34.32578 -33.58613 -32.78430 -31.13890 -30.38920 -29.51209 -28.12968 -26.81731 -25.90953 -23.90042 -23.56209 -22.28714 -21.73526 -21.40966 -21.07142 -20.70558 -18.82370 -18.46673 -17.93679 -17.35754 -16.79728 -16.58643 -16.31991 -16.04999 -15.78333 -15.52153 -15.26082 -15.15032 -14.68713 -14.65094 -14.37122 -14.13986 -13.79692 -13.56955 -13.44253 -13.26471 -13.23948 -12.87356 -12.85100 -12.73147 -12.60532 -12.32180 -12.22733 -12.13328 -12.08414 -12.02090 -11.97061 -11.93878 -11.89836 -11.73084 -11.55500 -11.52749 -11.36803 -11.27635 -11.15909 -10.69437 -10.22789 -9.99069 -8.85394 -7.83512 -5.21948 1.47652 1.49234 1.56762 1.57615 2.00745 2.50975 2.65828 3.35112 3.49561 3.61676 3.65767 3.83044 3.83956 3.90765 3.92229 4.05278 4.16941 4.19344 4.26762 4.35142 4.39767 4.43462 4.48163 4.59613 4.60557 4.63841 4.68005 4.69255 4.72786 4.75907 4.83512 4.85935 4.92395 4.98799 5.00782 5.04193 5.15033 5.19858 5.21889 5.25352 5.29432 5.30948 5.39514 5.45648 5.46724 5.50701 5.55605 5.58849 5.65926 5.71881 6.07469 6.23345 6.57911 7.09100 7.25020 7.77076 8.43528 9.26711 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014399 B = 0.003197 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.069726 B = 8754.780345 C =10080.281133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.048 3.952 3 O -0.371 6.371 4 C 0.090 3.910 5 H 0.110 0.890 6 C 0.488 3.512 7 O -0.574 6.574 8 N -0.698 5.698 9 C 0.155 3.845 10 H 0.071 0.929 11 C -0.142 4.142 12 C 0.181 3.819 13 N -0.613 5.613 14 C -0.230 4.230 15 H 0.085 0.915 16 C -0.065 4.065 17 N -0.951 5.951 18 Si 0.976 3.024 19 H -0.290 1.290 20 H -0.298 1.298 21 H -0.265 1.265 22 C 0.161 3.839 23 H 0.055 0.945 24 C -0.126 4.126 25 C -0.135 4.135 26 C -0.082 4.082 27 C -0.134 4.134 28 C -0.119 4.119 29 C -0.123 4.123 30 C -0.104 4.104 31 H 0.089 0.911 32 H 0.046 0.954 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.031 0.969 36 H 0.412 0.588 37 H 0.061 0.939 38 H 0.074 0.926 39 H -0.011 1.011 40 H 0.048 0.952 41 H 0.246 0.754 42 H 0.032 0.968 43 H 0.052 0.948 44 H 0.071 0.929 45 H 0.046 0.954 46 H 0.059 0.941 47 H 0.070 0.930 48 H 0.085 0.915 49 H 0.072 0.928 50 H 0.077 0.923 51 H 0.063 0.937 52 H 0.062 0.938 53 H 0.075 0.925 54 H 0.064 0.936 55 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.087 4.109 -22.590 25.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.028 4.028 3 O -0.289 6.289 4 C 0.028 3.972 5 H 0.128 0.872 6 C 0.275 3.725 7 O -0.453 6.453 8 N -0.353 5.353 9 C 0.049 3.951 10 H 0.089 0.911 11 C -0.181 4.181 12 C 0.055 3.945 13 N -0.337 5.337 14 C -0.359 4.359 15 H 0.103 0.897 16 C -0.258 4.258 17 N -0.600 5.600 18 Si 0.804 3.196 19 H -0.217 1.217 20 H -0.224 1.224 21 H -0.189 1.189 22 C 0.055 3.945 23 H 0.072 0.928 24 C -0.166 4.166 25 C -0.192 4.192 26 C -0.101 4.101 27 C -0.171 4.171 28 C -0.157 4.157 29 C -0.161 4.161 30 C -0.142 4.142 31 H 0.108 0.892 32 H 0.065 0.935 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.050 0.950 36 H 0.251 0.749 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.007 0.993 40 H 0.066 0.934 41 H 0.055 0.945 42 H 0.051 0.949 43 H 0.070 0.930 44 H 0.090 0.910 45 H 0.065 0.935 46 H 0.078 0.922 47 H 0.089 0.911 48 H 0.104 0.896 49 H 0.090 0.910 50 H 0.095 0.905 51 H 0.082 0.918 52 H 0.081 0.919 53 H 0.094 0.906 54 H 0.083 0.917 55 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.642 4.210 -21.816 25.084 hybrid contribution 1.231 -0.342 1.251 1.788 sum -10.411 3.868 -20.565 23.373 Atomic orbital electron populations 1.21716 0.92556 1.03328 1.02642 1.22750 0.96840 0.82896 1.00309 1.87966 1.18825 1.27878 1.94250 1.22170 0.83147 1.01741 0.90116 0.87229 1.22024 0.82176 0.75204 0.93091 1.90690 1.56269 1.50493 1.47823 1.46119 1.07018 1.74153 1.08052 1.21631 0.94328 0.96052 0.83053 0.91118 1.23225 0.98629 0.97003 0.99268 1.21172 0.87872 0.94009 0.91451 1.44697 1.06085 1.39555 1.43405 1.19338 0.84130 1.27004 1.05405 0.89687 1.25678 1.02104 1.00874 0.97129 1.70147 1.35019 1.37623 1.17192 0.85120 0.79948 0.76380 0.78139 1.21696 1.22427 1.18920 1.21223 0.89772 0.90590 0.92952 0.92766 1.21908 1.00303 0.96022 0.98388 1.21699 0.99851 0.99269 0.98408 1.22134 0.96825 0.94338 0.96769 1.22700 0.93237 1.01559 0.99648 1.22071 0.98284 0.99498 0.95821 1.22142 0.95082 0.99514 0.99316 1.22266 0.99212 1.00552 0.92173 0.89208 0.93491 0.91017 0.90781 0.95028 0.74919 0.92063 0.90776 0.99308 0.93381 0.94469 0.94886 0.92953 0.91003 0.93500 0.92219 0.91135 0.89622 0.90988 0.90453 0.91797 0.91887 0.90587 0.91708 0.90543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 10.28 71.98 0.74 -1.71 16 2 C 0.05 0.96 6.46 71.98 0.46 1.43 16 3 O -0.37 -9.03 9.22 -129.99 -1.20 -10.23 16 4 C 0.09 1.90 2.11 29.85 0.06 1.96 16 5 H 0.11 1.73 7.74 -2.39 -0.02 1.71 16 6 C 0.49 14.22 7.11 87.66 0.62 14.85 16 7 O -0.57 -22.45 16.23 15.95 0.26 -22.19 16 8 N -0.70 -18.97 4.22 -436.91 -1.84 -20.82 16 9 C 0.16 5.56 1.92 46.18 0.09 5.65 16 10 H 0.07 2.88 7.34 -2.39 -0.02 2.86 16 11 C -0.14 -5.66 6.77 31.99 0.22 -5.44 16 12 C 0.18 9.12 5.47 86.85 0.47 9.60 16 13 N -0.61 -30.43 3.13 -668.28 -2.09 -32.52 16 14 C -0.23 -12.39 9.77 84.03 0.82 -11.57 16 15 H 0.09 4.33 7.83 -2.91 -0.02 4.31 16 16 C -0.06 -3.63 5.47 84.86 0.46 -3.16 16 17 N -0.95 -57.09 10.47 21.65 0.23 -56.87 16 18 Si 0.98 45.10 29.55 68.60 2.03 47.12 16 19 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 20 H -0.30 -13.96 7.11 99.48 0.71 -13.26 16 21 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 22 C 0.16 6.18 2.94 45.34 0.13 6.32 16 23 H 0.05 1.90 7.69 -2.39 -0.02 1.88 16 24 C -0.13 -4.56 5.41 30.59 0.17 -4.40 16 25 C -0.13 -3.57 9.22 71.98 0.66 -2.91 16 26 C -0.08 -1.41 2.65 -9.48 -0.03 -1.44 16 27 C -0.13 -1.88 4.47 31.69 0.14 -1.73 16 28 C -0.12 -1.41 6.80 31.32 0.21 -1.19 16 29 C -0.12 -1.38 6.80 31.32 0.21 -1.17 16 30 C -0.10 -1.40 5.99 31.67 0.19 -1.21 16 31 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.07 1.06 8.09 -2.39 -0.02 1.04 16 35 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.41 8.79 5.62 -92.71 -0.52 8.27 16 37 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 38 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 39 H -0.01 -0.63 8.12 -2.39 -0.02 -0.65 16 40 H 0.05 2.71 6.72 -2.39 -0.02 2.69 16 41 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 42 H 0.03 1.33 8.08 -2.39 -0.02 1.31 16 43 H 0.05 2.00 7.91 -2.39 -0.02 1.98 16 44 H 0.07 1.58 7.08 -2.38 -0.02 1.57 16 45 H 0.05 1.28 7.36 -2.39 -0.02 1.27 16 46 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 47 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 48 H 0.09 0.95 7.56 -2.39 -0.02 0.94 16 49 H 0.07 1.16 5.69 -2.38 -0.01 1.14 16 50 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 51 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 52 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 53 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 54 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 55 H 0.08 0.87 8.05 -2.39 -0.02 0.85 16 Total: -1.00 -71.00 418.78 3.35 -67.65 By element: Atomic # 1 Polarization: 23.67 SS G_CDS: 0.32 Total: 23.99 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: 5.65 Total: 3.86 kcal Atomic # 7 Polarization: -106.49 SS G_CDS: -3.71 Total: -110.20 kcal Atomic # 8 Polarization: -31.48 SS G_CDS: -0.94 Total: -32.42 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.12 kcal Total: -71.00 3.35 -67.65 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707197087.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.096 kcal (2) G-P(sol) polarization free energy of solvation -70.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds