Wall clock time and date at job start Tue Mar 31 2020 22:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53006 * 109.47191 * 2 1 4 4 H 1.08998 * 109.47475 * 305.02197 * 3 2 1 5 5 C 1.53092 * 109.48171 * 185.00185 * 3 2 1 6 6 C 1.53174 * 109.16064 * 182.39852 * 5 3 2 7 7 H 1.09003 * 109.54217 * 297.01937 * 6 5 3 8 8 C 1.53002 * 109.54456 * 176.84534 * 6 5 3 9 9 C 1.50700 * 109.47388 * 174.99346 * 8 6 5 10 10 O 1.21283 * 119.99806 * 0.02562 * 9 8 6 11 11 N 1.34772 * 119.99942 * 179.97438 * 9 8 6 12 12 C 1.46500 * 119.99917 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.47362 * 180.02562 * 12 11 9 14 14 C 1.52994 * 109.47194 * 180.02562 * 13 12 11 15 15 N 1.46501 * 109.47055 * 179.97438 * 14 13 12 16 16 C 1.36932 * 120.00166 * 269.99913 * 15 14 13 17 17 H 1.08008 * 119.99849 * 141.08253 * 16 15 14 18 18 C 1.38806 * 120.00520 * 321.08855 * 16 15 14 19 19 N 1.31627 * 119.99760 * 339.80873 * 18 16 15 20 20 Si 1.86793 * 120.00656 * 159.80910 * 18 16 15 21 21 H 1.48498 * 109.47007 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47343 * 119.99863 * 20 18 16 23 23 H 1.48497 * 109.47389 * 240.00175 * 20 18 16 24 24 C 1.46499 * 119.99908 * 90.00092 * 15 14 13 25 25 C 1.53000 * 117.50108 * 165.84103 * 24 15 14 26 26 C 1.52998 * 117.50091 * 234.50391 * 24 15 14 27 27 C 1.53180 * 109.03936 * 56.97832 * 6 5 3 28 28 C 1.53094 * 109.15997 * 303.01883 * 27 6 5 29 29 O 1.42895 * 109.41347 * 57.61090 * 28 27 6 30 30 H 1.08995 * 109.47476 * 60.00301 * 1 2 3 31 31 H 1.09009 * 109.46967 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47495 * 299.99797 * 1 2 3 33 33 H 1.09002 * 109.47495 * 240.00203 * 2 1 3 34 34 H 1.09005 * 109.47441 * 119.99728 * 2 1 3 35 35 H 1.08996 * 109.52172 * 62.49129 * 5 3 2 36 36 H 1.09001 * 109.52004 * 302.30080 * 5 3 2 37 37 H 1.09000 * 109.46885 * 54.99686 * 8 6 5 38 38 H 1.08994 * 109.47304 * 295.00239 * 8 6 5 39 39 H 0.96993 * 120.00359 * 0.02562 * 11 9 8 40 40 H 1.09000 * 109.47009 * 60.00515 * 12 11 9 41 41 H 1.09004 * 109.47536 * 300.00866 * 12 11 9 42 42 H 1.09000 * 109.46885 * 60.00137 * 13 12 11 43 43 H 1.09003 * 109.46752 * 300.00579 * 13 12 11 44 44 H 1.09000 * 109.47184 * 60.00208 * 14 13 12 45 45 H 1.09003 * 109.47654 * 299.99916 * 14 13 12 46 46 H 0.96996 * 120.00286 * 175.03611 * 19 18 16 47 47 H 1.09007 * 115.55486 * 20.17231 * 24 15 14 48 48 H 1.08998 * 117.50452 * 214.99701 * 25 24 15 49 49 H 1.08995 * 117.49690 * 0.03091 * 25 24 15 50 50 H 1.09004 * 117.49742 * 359.97438 * 26 24 15 51 51 H 1.09005 * 117.49909 * 144.99567 * 26 24 15 52 52 H 1.08993 * 109.52225 * 62.92397 * 27 6 5 53 53 H 1.08999 * 109.52290 * 183.11469 * 27 6 5 54 54 H 1.08995 * 109.48037 * 297.62435 * 28 27 6 55 55 H 1.09007 * 109.48435 * 177.59701 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6051 1.9817 -0.8416 5 6 3.5657 1.4446 -0.1258 6 6 4.0732 2.8886 -0.0648 7 1 3.6802 3.4493 -0.9129 8 6 5.6025 2.8960 -0.1107 9 6 6.0963 4.3183 -0.1747 10 8 5.3032 5.2358 -0.1822 11 7 7.4193 4.5708 -0.2224 12 6 7.8994 5.9536 -0.2839 13 6 9.4287 5.9610 -0.3300 14 6 9.9300 7.4050 -0.3937 15 7 11.3944 7.4121 -0.4371 16 6 12.1138 7.4555 0.7272 17 1 13.0201 6.8761 0.8239 18 6 11.6782 8.2440 1.7833 19 7 10.8372 9.2324 1.5634 20 14 12.2853 7.9025 3.5165 21 1 13.2158 6.7454 3.4960 22 1 12.9939 9.0990 4.0375 23 1 11.1284 7.5911 4.3939 24 6 12.0891 7.3728 -1.7263 25 6 13.5807 7.7133 -1.7358 26 6 13.1243 6.2662 -1.9376 27 6 3.5967 3.5309 1.2416 28 6 2.0698 3.4482 1.3145 29 8 1.6632 2.0815 1.2214 30 1 -0.3634 0.5137 -0.8899 31 1 -0.3633 -1.0278 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.8533 0.9973 -1.0773 36 1 3.9995 0.8712 0.6933 37 1 5.9421 2.3535 -0.9931 38 1 5.9953 2.4149 0.7849 39 1 8.0537 3.8371 -0.2160 40 1 7.5596 6.4958 0.5985 41 1 7.5069 6.4350 -1.1797 42 1 9.7682 5.4189 -1.2126 43 1 9.8215 5.4794 0.5656 44 1 9.5905 7.9468 0.4892 45 1 9.5373 7.8870 -1.2890 46 1 10.4769 9.7376 2.3089 47 1 11.4974 7.6797 -2.5889 48 1 13.9703 8.2441 -2.6044 49 1 14.0452 7.9661 -0.7827 50 1 13.2888 5.5676 -1.1171 51 1 13.2136 5.8450 -2.9390 52 1 4.0311 2.9996 2.0884 53 1 3.9066 4.5756 1.2681 54 1 1.6353 4.0137 0.4902 55 1 1.7278 3.8655 2.2617 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713773505.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:37 Heat of formation + Delta-G solvation = -86.309231 kcal Electronic energy + Delta-G solvation = -29487.670512 eV Core-core repulsion = 25524.110177 eV Total energy + Delta-G solvation = -3963.560335 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.18855 -40.07688 -38.86748 -36.75303 -35.58066 -35.22111 -34.85385 -33.37112 -31.39001 -30.72530 -29.70147 -27.13482 -25.60926 -24.74498 -24.26525 -22.93549 -22.47434 -22.12502 -21.65413 -21.30887 -20.75159 -18.28805 -17.97027 -17.37631 -17.34955 -16.98274 -16.76108 -16.67846 -16.20679 -15.93278 -15.60997 -15.48962 -15.18757 -14.79913 -14.57262 -14.51178 -14.07412 -13.99434 -13.79284 -13.57703 -13.48767 -13.25472 -12.86736 -12.74446 -12.66646 -12.63173 -12.43827 -12.33996 -12.21984 -12.15484 -12.05720 -11.97705 -11.96382 -11.72591 -11.58351 -11.43992 -11.24988 -11.16788 -10.90494 -10.76140 -10.41856 -10.32367 -10.03221 -8.50788 -7.77431 -5.51254 1.41429 1.45920 1.54608 1.69567 2.25227 2.47820 2.87203 3.15503 3.44581 3.50142 3.64352 3.67827 3.80387 4.02187 4.07454 4.17728 4.23746 4.25124 4.30499 4.32491 4.40643 4.44665 4.47682 4.52372 4.55574 4.56842 4.63792 4.69744 4.74483 4.77112 4.84115 4.90065 4.96733 4.97649 4.99418 5.04399 5.06584 5.13051 5.13142 5.17977 5.23344 5.28361 5.35434 5.43903 5.47113 5.47221 5.52835 5.56728 5.65810 5.80384 6.34192 6.44853 6.62762 7.15133 7.32131 7.84245 8.35654 9.09576 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.017479 B = 0.001895 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.539035 B =14768.934043 C =15637.738930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.113 4.113 3 C 0.082 3.918 4 H 0.053 0.947 5 C -0.138 4.138 6 C -0.071 4.071 7 H 0.063 0.937 8 C -0.126 4.126 9 C 0.503 3.497 10 O -0.584 6.584 11 N -0.719 5.719 12 C 0.134 3.866 13 C -0.120 4.120 14 C 0.152 3.848 15 N -0.566 5.566 16 C -0.254 4.254 17 H 0.054 0.946 18 C -0.034 4.034 19 N -0.914 5.914 20 Si 0.950 3.050 21 H -0.267 1.267 22 H -0.293 1.293 23 H -0.289 1.289 24 C 0.100 3.900 25 C -0.201 4.201 26 C -0.199 4.199 27 C -0.154 4.154 28 C 0.065 3.935 29 O -0.394 6.394 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.045 0.955 33 H 0.094 0.906 34 H 0.068 0.932 35 H 0.095 0.905 36 H 0.078 0.922 37 H 0.123 0.877 38 H 0.112 0.888 39 H 0.414 0.586 40 H 0.040 0.960 41 H 0.058 0.942 42 H 0.069 0.931 43 H 0.052 0.948 44 H 0.060 0.940 45 H 0.031 0.969 46 H 0.250 0.750 47 H 0.104 0.896 48 H 0.100 0.900 49 H 0.069 0.931 50 H 0.070 0.930 51 H 0.106 0.894 52 H 0.066 0.934 53 H 0.067 0.933 54 H 0.045 0.955 55 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.002 -19.969 -6.291 25.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.151 4.151 3 C 0.025 3.975 4 H 0.071 0.929 5 C -0.175 4.175 6 C -0.090 4.090 7 H 0.081 0.919 8 C -0.166 4.166 9 C 0.291 3.709 10 O -0.464 6.464 11 N -0.371 5.371 12 C 0.009 3.991 13 C -0.160 4.160 14 C 0.025 3.975 15 N -0.283 5.283 16 C -0.385 4.385 17 H 0.072 0.928 18 C -0.232 4.232 19 N -0.557 5.557 20 Si 0.779 3.221 21 H -0.191 1.191 22 H -0.220 1.220 23 H -0.215 1.215 24 C -0.009 4.009 25 C -0.240 4.240 26 C -0.239 4.239 27 C -0.191 4.191 28 C -0.012 4.012 29 O -0.314 6.314 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.113 0.887 34 H 0.086 0.914 35 H 0.113 0.887 36 H 0.096 0.904 37 H 0.141 0.859 38 H 0.130 0.870 39 H 0.250 0.750 40 H 0.059 0.941 41 H 0.076 0.924 42 H 0.088 0.912 43 H 0.071 0.929 44 H 0.078 0.922 45 H 0.050 0.950 46 H 0.060 0.940 47 H 0.121 0.879 48 H 0.118 0.882 49 H 0.088 0.912 50 H 0.089 0.911 51 H 0.125 0.875 52 H 0.085 0.915 53 H 0.085 0.915 54 H 0.064 0.936 55 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -15.689 -19.228 -6.034 25.540 hybrid contribution 0.878 0.585 1.061 1.496 sum -14.812 -18.642 -4.973 24.324 Atomic orbital electron populations 1.21714 0.95493 1.01966 1.01583 1.21574 0.96546 0.93457 1.03490 1.22317 0.94098 0.94599 0.86480 0.92853 1.22253 0.95590 0.95449 1.04215 1.20906 0.93636 0.96641 0.97825 0.91854 1.21766 0.96509 0.91677 1.06636 1.21425 0.81829 0.92852 0.74781 1.90656 1.55688 1.48637 1.51437 1.46067 1.07499 1.09024 1.74546 1.21060 0.94465 0.83043 1.00492 1.22074 0.92100 1.00122 1.01726 1.20709 0.82785 0.93583 1.00394 1.43531 1.01224 1.83381 1.00174 1.19068 1.08224 1.19368 0.91817 0.92819 1.25844 1.00500 0.94275 1.02549 1.70187 1.35489 1.19240 1.30796 0.85490 0.77808 0.77572 0.81273 1.19132 1.22046 1.21523 1.21439 0.88770 1.01075 0.89585 1.23076 0.99955 0.99199 1.01772 1.23311 1.07586 0.91396 1.01636 1.22292 0.96733 1.02064 0.98047 1.22522 0.93831 0.82723 1.02109 1.87886 1.78990 1.24979 1.39537 0.92803 0.91686 0.93550 0.88713 0.91350 0.88660 0.90374 0.85866 0.86999 0.74965 0.94139 0.92407 0.91231 0.92942 0.92158 0.95035 0.94025 0.87852 0.88216 0.91210 0.91122 0.87528 0.91508 0.91483 0.93617 0.88598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.81 71.98 0.71 -1.15 16 2 C -0.11 -1.34 5.64 30.59 0.17 -1.17 16 3 C 0.08 1.27 2.64 30.63 0.08 1.35 16 4 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 5 C -0.14 -1.78 4.71 30.68 0.14 -1.64 16 6 C -0.07 -1.27 1.92 -10.67 -0.02 -1.29 16 7 H 0.06 1.34 7.95 -2.39 -0.02 1.32 16 8 C -0.13 -1.99 5.18 29.85 0.15 -1.84 16 9 C 0.50 12.81 7.57 87.66 0.66 13.47 16 10 O -0.58 -19.98 14.00 -3.04 -0.04 -20.02 16 11 N -0.72 -17.85 5.56 -463.06 -2.57 -20.42 16 12 C 0.13 4.31 5.67 86.38 0.49 4.80 16 13 C -0.12 -4.19 5.65 30.59 0.17 -4.02 16 14 C 0.15 6.72 5.33 86.38 0.46 7.18 16 15 N -0.57 -26.81 2.78 -678.04 -1.88 -28.70 16 16 C -0.25 -13.35 8.00 84.03 0.67 -12.68 16 17 H 0.05 2.86 7.26 -2.91 -0.02 2.84 16 18 C -0.03 -1.84 4.97 84.86 0.42 -1.42 16 19 N -0.91 -52.56 11.49 21.65 0.25 -52.31 16 20 Si 0.95 43.86 29.60 68.60 2.03 45.89 16 21 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 22 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 23 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 24 C 0.10 4.02 6.61 44.99 0.30 4.31 16 25 C -0.20 -7.66 9.82 30.62 0.30 -7.36 16 26 C -0.20 -6.87 10.09 30.62 0.31 -6.56 16 27 C -0.15 -3.28 5.13 30.69 0.16 -3.12 16 28 C 0.06 1.31 6.84 72.01 0.49 1.80 16 29 O -0.39 -8.04 9.94 -148.98 -1.48 -9.52 16 30 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 32 H 0.05 0.72 7.83 -2.39 -0.02 0.70 16 33 H 0.09 0.74 8.14 -2.39 -0.02 0.73 16 34 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 35 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.41 7.72 8.47 -92.71 -0.79 6.94 16 40 H 0.04 1.50 8.14 -2.39 -0.02 1.49 16 41 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.06 3.14 5.57 -2.39 -0.01 3.13 16 45 H 0.03 1.33 8.04 -2.39 -0.02 1.31 16 46 H 0.25 14.00 8.32 -92.71 -0.77 13.23 16 47 H 0.10 3.79 8.10 -2.38 -0.02 3.77 16 48 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 49 H 0.07 3.06 6.98 -2.39 -0.02 3.05 16 50 H 0.07 2.65 7.99 -2.39 -0.02 2.63 16 51 H 0.11 2.97 8.14 -2.38 -0.02 2.95 16 52 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 53 H 0.07 1.82 6.07 -2.39 -0.01 1.81 16 54 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 55 H 0.10 1.78 8.14 -2.38 -0.02 1.76 16 Total: -1.00 -66.67 429.41 2.03 -64.64 By element: Atomic # 1 Polarization: 29.71 SS G_CDS: 0.05 Total: 29.76 kcal Atomic # 6 Polarization: -15.01 SS G_CDS: 5.68 Total: -9.33 kcal Atomic # 7 Polarization: -97.22 SS G_CDS: -4.21 Total: -101.43 kcal Atomic # 8 Polarization: -28.02 SS G_CDS: -1.52 Total: -29.54 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -66.67 2.03 -64.64 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713773505.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.670 kcal (2) G-P(sol) polarization free energy of solvation -66.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds