Wall clock time and date at job start Tue Mar 31 2020 23:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53006 * 109.46986 * 2 1 4 4 H 1.08999 * 109.47072 * 305.00172 * 3 2 1 5 5 C 1.53002 * 109.46994 * 64.99897 * 3 2 1 6 6 C 1.52998 * 109.47367 * 185.00129 * 3 2 1 7 7 H 1.09001 * 109.47009 * 59.99671 * 6 3 2 8 8 O 1.42897 * 109.46959 * 300.00350 * 6 3 2 9 9 C 1.42905 * 114.00303 * 149.99598 * 8 6 3 10 10 C 1.50691 * 109.47458 * 179.97438 * 6 3 2 11 11 O 1.21286 * 119.99766 * 114.99763 * 10 6 3 12 12 N 1.34770 * 120.00226 * 295.00448 * 10 6 3 13 13 C 1.46941 * 120.55367 * 180.02562 * 12 10 6 14 14 C 1.53333 * 108.68764 * 125.62698 * 13 12 10 15 15 C 1.52103 * 109.44416 * 53.30334 * 14 13 12 16 16 C 1.54391 * 110.51280 * 64.09319 * 15 14 13 17 17 C 1.54448 * 102.87090 * 83.32985 * 16 15 14 18 18 N 1.47085 * 107.29889 * 21.50939 * 17 16 15 19 19 C 1.36932 * 125.62582 * 180.96949 * 18 17 16 20 20 H 1.08008 * 119.99900 * 189.80083 * 19 18 17 21 21 C 1.38813 * 120.00606 * 9.79748 * 19 18 17 22 22 N 1.31612 * 120.00346 * 208.95226 * 21 19 18 23 23 Si 1.86795 * 119.99699 * 28.95134 * 21 19 18 24 24 H 1.48502 * 109.47477 * 275.30216 * 23 21 19 25 25 H 1.48501 * 109.47387 * 35.30155 * 23 21 19 26 26 H 1.48497 * 109.47357 * 155.30134 * 23 21 19 27 27 C 1.47569 * 108.74352 * 1.22821 * 18 17 16 28 28 C 1.52107 * 111.60214 * 300.69308 * 15 14 13 29 29 C 1.46925 * 120.55333 * 359.97438 * 12 10 6 30 30 H 1.08992 * 109.46517 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46564 * 300.00005 * 1 2 3 32 32 H 1.09000 * 109.46950 * 59.99648 * 1 2 3 33 33 H 1.09003 * 109.46814 * 240.00432 * 2 1 3 34 34 H 1.08995 * 109.47376 * 120.00238 * 2 1 3 35 35 H 1.09003 * 109.46523 * 60.00237 * 5 3 2 36 36 H 1.08998 * 109.46774 * 179.97438 * 5 3 2 37 37 H 1.08996 * 109.47075 * 300.00427 * 5 3 2 38 38 H 1.09003 * 109.46709 * 59.99533 * 9 8 6 39 39 H 1.09001 * 109.47382 * 179.97438 * 9 8 6 40 40 H 1.09001 * 109.47144 * 300.00290 * 9 8 6 41 41 H 1.09002 * 109.60248 * 5.86007 * 13 12 10 42 42 H 1.09003 * 109.59887 * 245.38801 * 13 12 10 43 43 H 1.09001 * 109.47421 * 293.31323 * 14 13 12 44 44 H 1.09004 * 109.47981 * 173.29869 * 14 13 12 45 45 H 1.08999 * 110.72355 * 324.98567 * 16 15 14 46 46 H 1.08999 * 110.73294 * 201.67838 * 16 15 14 47 47 H 1.09005 * 109.88025 * 262.08337 * 17 16 15 48 48 H 1.09002 * 109.88083 * 140.93421 * 17 16 15 49 49 H 0.97003 * 120.00354 * 4.82071 * 22 21 19 50 50 H 1.08997 * 110.37508 * 95.25854 * 27 18 17 51 51 H 1.08992 * 110.38043 * 217.61228 * 27 18 17 52 52 H 1.09001 * 109.47853 * 179.29676 * 28 15 14 53 53 H 1.09003 * 109.47445 * 299.31479 * 28 15 14 54 54 H 1.09004 * 109.60149 * 354.12693 * 29 12 10 55 55 H 1.09000 * 109.60348 * 114.60753 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6353 2.1266 1.3074 6 6 3.5649 1.4445 -0.1258 7 1 3.8532 0.9571 -1.0571 8 8 4.1347 0.7378 0.9778 9 6 5.3747 0.0938 0.6779 10 6 4.0671 2.8652 -0.1264 11 8 4.7644 3.2623 0.7831 12 7 3.7414 3.6947 -1.1375 13 6 4.2249 5.0822 -1.1506 14 6 4.9485 5.3378 -2.4781 15 6 4.0358 4.9569 -3.6337 16 6 2.7874 5.8649 -3.6592 17 6 3.2885 7.1176 -4.4110 18 7 4.4668 6.7155 -5.1942 19 6 5.2174 7.5419 -5.9871 20 1 5.9658 7.1255 -6.6452 21 6 5.0165 8.9148 -5.9453 22 7 5.2594 9.6482 -7.0107 23 14 4.4014 9.7212 -4.3767 24 1 2.9194 9.6399 -4.3264 25 1 4.9758 9.0192 -3.2009 26 1 4.8198 11.1459 -4.3555 27 6 4.7027 5.2733 -4.9893 28 6 3.6286 3.4928 -3.5666 29 6 2.8979 3.2263 -2.2455 30 1 -0.3632 -1.0276 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8934 -0.5138 -0.8901 34 1 1.8935 -0.5138 0.8899 35 1 2.0700 1.5875 2.1491 36 1 1.9990 3.1541 1.3075 37 1 0.5490 2.1252 1.3969 38 1 6.1043 0.8396 0.3622 39 1 5.7417 -0.4197 1.5666 40 1 5.2241 -0.6291 -0.1238 41 1 4.9159 5.2366 -0.3218 42 1 3.3802 5.7647 -1.0572 43 1 5.8566 4.7363 -2.5187 44 1 5.2083 6.3937 -2.5530 45 1 2.4762 6.1213 -2.6465 46 1 1.9738 5.3871 -4.2049 47 1 3.5654 7.8927 -3.6963 48 1 2.5088 7.4866 -5.0774 49 1 5.5114 9.2228 -7.8453 50 1 4.2376 4.6955 -5.7879 51 1 5.7718 5.0664 -4.9431 52 1 2.9670 3.2610 -4.4013 53 1 4.5181 2.8653 -3.6226 54 1 2.7143 2.1572 -2.1387 55 1 1.9504 3.7651 -2.2369 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715215794.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:26 Heat of formation + Delta-G solvation = -80.014868 kcal Electronic energy + Delta-G solvation = -32261.616260 eV Core-core repulsion = 28298.328870 eV Total energy + Delta-G solvation = -3963.287391 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -41.95845 -40.53178 -38.65324 -37.42283 -36.53914 -34.92061 -33.08710 -32.47989 -31.09266 -30.56390 -28.90153 -28.28244 -27.10352 -25.67102 -25.06134 -24.16395 -23.85465 -22.23311 -21.06481 -20.95036 -19.84689 -18.94776 -18.16461 -17.75703 -17.22760 -17.10311 -16.56771 -16.37213 -15.95221 -15.71227 -15.58614 -15.37941 -15.33579 -14.88961 -14.64975 -14.51928 -14.31706 -14.25712 -13.99931 -13.86689 -13.58066 -13.19185 -13.00875 -12.95461 -12.92822 -12.83149 -12.64052 -12.54661 -12.24809 -12.19668 -12.06925 -11.83295 -11.73150 -11.70770 -11.61588 -11.55349 -11.33544 -11.25087 -11.23993 -11.02042 -10.59257 -10.21628 -9.64747 -9.08963 -8.68599 -5.39203 1.37539 1.48903 1.54056 1.68507 1.88361 2.52187 2.78780 2.99616 3.36114 3.39394 3.54446 3.71809 3.73362 3.80070 3.84248 4.05191 4.09018 4.11073 4.19978 4.28206 4.35030 4.40573 4.45697 4.50649 4.55193 4.61811 4.63143 4.65060 4.72202 4.74071 4.78030 4.79909 4.81648 4.83433 4.89523 4.90441 5.04265 5.05256 5.07251 5.10075 5.18162 5.25041 5.26539 5.29896 5.37420 5.42027 5.52192 5.54783 5.59399 5.61520 6.02318 6.11986 6.41171 6.82997 7.13880 7.50471 8.15561 8.82824 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.020171 B = 0.002931 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.780847 B = 9551.112852 C = 9785.867862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.110 4.110 3 C -0.086 4.086 4 H 0.112 0.888 5 C -0.142 4.142 6 C 0.080 3.920 7 H 0.110 0.890 8 O -0.372 6.372 9 C 0.025 3.975 10 C 0.490 3.510 11 O -0.580 6.580 12 N -0.601 5.601 13 C 0.118 3.882 14 C -0.107 4.107 15 C -0.060 4.060 16 C -0.108 4.108 17 C 0.109 3.891 18 N -0.628 5.628 19 C -0.319 4.319 20 H 0.043 0.957 21 C -0.070 4.070 22 N -0.952 5.952 23 Si 1.098 2.902 24 H -0.270 1.270 25 H -0.279 1.279 26 H -0.310 1.310 27 C 0.140 3.860 28 C -0.111 4.111 29 C 0.099 3.901 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.059 0.941 35 H 0.048 0.952 36 H 0.030 0.970 37 H 0.076 0.924 38 H 0.025 0.975 39 H 0.098 0.902 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.082 0.918 43 H 0.055 0.945 44 H 0.051 0.949 45 H 0.091 0.909 46 H 0.098 0.902 47 H 0.014 0.986 48 H 0.022 0.978 49 H 0.250 0.750 50 H 0.036 0.964 51 H 0.026 0.974 52 H 0.103 0.897 53 H 0.069 0.931 54 H 0.117 0.883 55 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.731 -24.999 15.015 31.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.105 4.105 4 H 0.130 0.870 5 C -0.199 4.199 6 C 0.018 3.982 7 H 0.128 0.872 8 O -0.289 6.289 9 C -0.071 4.071 10 C 0.279 3.721 11 O -0.459 6.459 12 N -0.335 5.335 13 C -0.004 4.004 14 C -0.145 4.145 15 C -0.061 4.061 16 C -0.146 4.146 17 C -0.015 4.015 18 N -0.356 5.356 19 C -0.447 4.447 20 H 0.061 0.939 21 C -0.265 4.265 22 N -0.595 5.595 23 Si 0.927 3.073 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.239 1.239 27 C 0.015 3.985 28 C -0.149 4.149 29 C -0.022 4.022 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.049 0.951 37 H 0.095 0.905 38 H 0.044 0.956 39 H 0.116 0.884 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.100 0.900 43 H 0.074 0.926 44 H 0.070 0.930 45 H 0.109 0.891 46 H 0.116 0.884 47 H 0.032 0.968 48 H 0.040 0.960 49 H 0.059 0.941 50 H 0.054 0.946 51 H 0.044 0.956 52 H 0.121 0.879 53 H 0.088 0.912 54 H 0.135 0.865 55 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -11.738 -23.343 16.316 30.804 hybrid contribution 1.673 -0.497 -1.479 2.288 sum -10.065 -23.841 14.837 29.830 Atomic orbital electron populations 1.21828 0.94788 1.02169 1.02316 1.21471 0.96504 0.93974 1.02834 1.21560 0.89329 0.99286 1.00303 0.86995 1.21757 1.01954 0.98872 0.97331 1.22305 0.95992 0.87684 0.92199 0.87211 1.87956 1.37697 1.67633 1.35613 1.22984 0.84956 0.96081 1.03094 1.21963 0.79605 0.89423 0.81147 1.90676 1.40034 1.77812 1.37390 1.48237 1.50952 1.11502 1.22828 1.21514 0.99149 0.82661 0.97103 1.21538 0.98099 1.00925 0.93988 1.21047 0.95169 0.96501 0.93422 1.22664 0.97314 0.93773 1.00835 1.21801 0.88777 0.97648 0.93283 1.44927 1.30171 1.05868 1.54584 1.19893 1.18139 0.89950 1.16732 0.93862 1.26856 1.01013 0.93586 1.05060 1.70985 1.49436 1.38549 1.00524 0.83368 0.76827 0.73527 0.73628 1.19581 1.20632 1.23875 1.21793 0.97404 0.84173 0.95087 1.21734 1.01674 0.93061 0.98479 1.22303 0.93763 1.02175 0.84000 0.92201 0.92846 0.91676 0.90501 0.92194 0.93292 0.95063 0.90533 0.95630 0.88375 0.91406 0.91119 0.90022 0.92604 0.93033 0.89089 0.88393 0.96842 0.95980 0.94065 0.94578 0.95584 0.87904 0.91246 0.86529 0.88624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.67 71.99 0.70 -0.48 16 2 C -0.11 -1.02 5.19 30.60 0.16 -0.86 16 3 C -0.09 -1.05 1.85 -10.79 -0.02 -1.07 16 4 H 0.11 0.93 5.40 -2.39 -0.01 0.92 16 5 C -0.14 -2.33 8.56 71.98 0.62 -1.71 16 6 C 0.08 1.32 1.42 29.84 0.04 1.36 16 7 H 0.11 1.23 7.08 -2.39 -0.02 1.22 16 8 O -0.37 -7.55 8.63 -130.00 -1.12 -8.68 16 9 C 0.02 0.39 10.81 113.37 1.23 1.62 16 10 C 0.49 11.69 5.81 87.66 0.51 12.20 16 11 O -0.58 -19.56 15.91 15.93 0.25 -19.31 16 12 N -0.60 -12.34 2.96 -818.38 -2.42 -14.77 16 13 C 0.12 3.00 6.12 86.41 0.53 3.53 16 14 C -0.11 -3.14 4.87 30.41 0.15 -2.99 16 15 C -0.06 -1.60 0.55 -51.84 -0.03 -1.63 16 16 C -0.11 -2.90 4.92 31.56 0.16 -2.74 16 17 C 0.11 4.44 4.61 86.76 0.40 4.84 16 18 N -0.63 -29.91 3.28 -692.32 -2.27 -32.18 16 19 C -0.32 -18.63 10.41 84.03 0.87 -17.75 16 20 H 0.04 2.74 8.06 -2.91 -0.02 2.72 16 21 C -0.07 -4.25 5.41 84.86 0.46 -3.79 16 22 N -0.95 -61.80 13.70 21.65 0.30 -61.50 16 23 Si 1.10 54.90 24.74 68.60 1.70 56.60 16 24 H -0.27 -12.26 6.74 99.48 0.67 -11.59 16 25 H -0.28 -13.15 6.86 99.48 0.68 -12.46 16 26 H -0.31 -15.87 7.11 99.48 0.71 -15.16 16 27 C 0.14 5.18 6.16 86.63 0.53 5.71 16 28 C -0.11 -1.86 4.84 30.40 0.15 -1.71 16 29 C 0.10 1.27 4.72 86.40 0.41 1.68 16 30 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.05 0.46 6.56 -2.39 -0.02 0.45 16 32 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.06 0.73 7.83 -2.39 -0.02 0.71 16 35 H 0.05 0.96 7.68 -2.39 -0.02 0.95 16 36 H 0.03 0.64 7.22 -2.39 -0.02 0.63 16 37 H 0.08 0.97 6.56 -2.39 -0.02 0.95 16 38 H 0.02 0.49 8.14 -2.39 -0.02 0.47 16 39 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.07 0.70 8.08 -2.39 -0.02 0.68 16 41 H 0.07 2.09 6.99 -2.39 -0.02 2.08 16 42 H 0.08 1.88 6.55 -2.39 -0.02 1.87 16 43 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.05 1.86 7.82 -2.39 -0.02 1.84 16 45 H 0.09 2.06 6.17 -2.39 -0.01 2.04 16 46 H 0.10 2.10 7.98 -2.39 -0.02 2.08 16 47 H 0.01 0.60 3.71 -2.38 -0.01 0.60 16 48 H 0.02 0.96 8.00 -2.39 -0.02 0.94 16 49 H 0.25 16.28 8.73 -92.71 -0.81 15.47 16 50 H 0.04 1.27 8.00 -2.39 -0.02 1.25 16 51 H 0.03 1.03 8.03 -2.39 -0.02 1.01 16 52 H 0.10 1.36 8.09 -2.39 -0.02 1.34 16 53 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 54 H 0.12 0.83 4.62 -2.38 -0.01 0.82 16 55 H 0.10 0.96 7.62 -2.39 -0.02 0.94 16 Total: -1.00 -79.58 399.64 4.05 -75.53 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: 0.76 Total: 8.12 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: 6.85 Total: -3.82 kcal Atomic # 7 Polarization: -104.05 SS G_CDS: -4.39 Total: -108.45 kcal Atomic # 8 Polarization: -27.12 SS G_CDS: -0.87 Total: -27.99 kcal Atomic # 14 Polarization: 54.90 SS G_CDS: 1.70 Total: 56.60 kcal Total: -79.58 4.05 -75.53 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715215794.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.482 kcal (2) G-P(sol) polarization free energy of solvation -79.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds