Wall clock time and date at job start Tue Mar 31 2020 23:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47502 * 2 1 4 4 H 1.09002 * 109.47107 * 306.07655 * 3 2 1 5 5 C 1.53004 * 109.46808 * 66.06978 * 3 2 1 6 6 C 1.52992 * 109.47455 * 186.06885 * 3 2 1 7 7 H 1.09008 * 109.47223 * 185.32277 * 6 3 2 8 8 O 1.42894 * 109.47550 * 305.32933 * 6 3 2 9 9 C 1.42894 * 114.00262 * 254.27377 * 8 6 3 10 10 C 1.50701 * 109.47117 * 65.33131 * 6 3 2 11 11 O 1.21279 * 119.99795 * 250.13821 * 10 6 3 12 12 N 1.34779 * 120.00005 * 70.13073 * 10 6 3 13 13 C 1.46937 * 120.55308 * 184.76309 * 12 10 6 14 14 C 1.53339 * 108.68799 * 125.63039 * 13 12 10 15 15 C 1.52109 * 109.43975 * 53.30356 * 14 13 12 16 16 C 1.54389 * 110.50535 * 64.09272 * 15 14 13 17 17 C 1.54453 * 102.87167 * 83.33198 * 16 15 14 18 18 N 1.47080 * 107.29658 * 21.50242 * 17 16 15 19 19 C 1.36940 * 125.62787 * 180.96825 * 18 17 16 20 20 H 1.07999 * 119.99752 * 183.25191 * 19 18 17 21 21 C 1.38811 * 120.00165 * 3.25860 * 19 18 17 22 22 N 1.31616 * 120.00070 * 211.37107 * 21 19 18 23 23 Si 1.86800 * 120.00029 * 31.36610 * 21 19 18 24 24 H 1.48510 * 109.47191 * 275.58290 * 23 21 19 25 25 H 1.48503 * 109.47393 * 35.57911 * 23 21 19 26 26 H 1.48499 * 109.47296 * 155.58207 * 23 21 19 27 27 C 1.47567 * 108.74169 * 1.23375 * 18 17 16 28 28 C 1.52106 * 111.60218 * 300.69830 * 15 14 13 29 29 C 1.46929 * 120.55249 * 4.74925 * 12 10 6 30 30 H 1.09007 * 109.47118 * 60.00211 * 1 2 3 31 31 H 1.09004 * 109.47485 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47129 * 300.00150 * 1 2 3 33 33 H 1.09004 * 109.47322 * 240.00021 * 2 1 3 34 34 H 1.09003 * 109.46699 * 120.00404 * 2 1 3 35 35 H 1.09001 * 109.47027 * 174.52929 * 5 3 2 36 36 H 1.08999 * 109.47356 * 294.52047 * 5 3 2 37 37 H 1.08994 * 109.47065 * 54.52484 * 5 3 2 38 38 H 1.09007 * 109.47566 * 59.35730 * 9 8 6 39 39 H 1.09005 * 109.47682 * 179.35858 * 9 8 6 40 40 H 1.08998 * 109.47553 * 299.36139 * 9 8 6 41 41 H 1.09005 * 109.60146 * 5.87242 * 13 12 10 42 42 H 1.09006 * 109.60326 * 245.39554 * 13 12 10 43 43 H 1.09004 * 109.47470 * 293.31899 * 14 13 12 44 44 H 1.08994 * 109.47986 * 173.29897 * 14 13 12 45 45 H 1.08995 * 110.73735 * 324.98084 * 16 15 14 46 46 H 1.09004 * 110.73148 * 201.67577 * 16 15 14 47 47 H 1.09004 * 109.87943 * 262.07888 * 17 16 15 48 48 H 1.08999 * 109.88239 * 140.93012 * 17 16 15 49 49 H 0.96996 * 120.00253 * 5.07507 * 22 21 19 50 50 H 1.08998 * 110.38228 * 95.26403 * 27 18 17 51 51 H 1.09004 * 110.37369 * 217.60752 * 27 18 17 52 52 H 1.08996 * 109.47757 * 179.29619 * 28 15 14 53 53 H 1.09001 * 109.46935 * 299.30527 * 28 15 14 54 54 H 1.08993 * 109.59929 * 354.11910 * 29 12 10 55 55 H 1.08997 * 109.60170 * 114.60240 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5906 1.9867 -0.8306 5 6 1.6584 2.1182 1.3186 6 6 3.5624 1.4451 -0.1525 7 1 3.9352 2.4650 -0.0578 8 8 4.1446 0.6286 0.8655 9 6 4.7781 1.3675 1.9117 10 6 3.9324 0.8988 -1.5074 11 8 4.4665 -0.1862 -1.5985 12 7 3.6698 1.6161 -2.6179 13 6 3.9294 1.0525 -3.9498 14 6 2.6419 1.1368 -4.7784 15 6 2.1257 2.5676 -4.7676 16 6 3.1307 3.5104 -5.4637 17 6 2.7765 3.3480 -6.9583 18 7 1.3982 2.8393 -7.0282 19 6 0.7146 2.5430 -8.1772 20 1 -0.3157 2.2234 -8.1253 21 6 1.3459 2.6533 -9.4085 22 7 0.6515 2.9826 -10.4769 23 14 3.1811 2.3344 -9.5491 24 1 3.9265 3.5712 -9.2022 25 1 3.5673 1.2456 -8.6159 26 1 3.5086 1.9330 -10.9407 27 6 0.8714 2.7070 -5.6561 28 6 1.8360 3.0477 -3.3537 29 6 3.1188 2.9744 -2.5167 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8932 -0.5139 0.8900 35 1 2.1042 3.1121 1.3598 36 1 0.5737 2.2038 1.3824 37 1 2.0255 1.5205 2.1528 38 1 4.0475 2.0206 2.3892 39 1 5.1848 0.6763 2.6500 40 1 5.5852 1.9694 1.4942 41 1 4.2343 0.0105 -3.8529 42 1 4.7183 1.6226 -4.4407 43 1 1.8893 0.4757 -4.3487 44 1 2.8495 0.8331 -5.8044 45 1 4.1552 3.1911 -5.2731 46 1 2.9802 4.5408 -5.1413 47 1 3.4580 2.6371 -7.4256 48 1 2.8415 4.3126 -7.4617 49 1 -0.2852 3.2200 -10.3925 50 1 0.3044 3.5959 -5.3798 51 1 0.2475 1.8170 -5.5733 52 1 1.4811 4.0778 -3.3852 53 1 1.0719 2.4136 -2.9041 54 1 2.8892 3.1992 -1.4752 55 1 3.8450 3.6928 -2.8969 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715215796.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:37 Heat of formation + Delta-G solvation = -80.607142 kcal Electronic energy + Delta-G solvation = -32494.562903 eV Core-core repulsion = 28531.249830 eV Total energy + Delta-G solvation = -3963.313074 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 2.26 seconds Orbital eigenvalues (eV) -41.94141 -40.50218 -38.81843 -37.37404 -36.38231 -34.93009 -33.07506 -32.48426 -31.00147 -30.57247 -29.38110 -28.41492 -26.72505 -25.44716 -24.93326 -24.07086 -24.02397 -22.27183 -21.30863 -20.97857 -19.79074 -18.82565 -18.28557 -17.67510 -17.12022 -16.92049 -16.65757 -16.56005 -16.08102 -15.54694 -15.53139 -15.43472 -15.28062 -14.93998 -14.85064 -14.50671 -14.27384 -14.18562 -13.84849 -13.64102 -13.59082 -13.29919 -13.08214 -12.99754 -12.92327 -12.90528 -12.65900 -12.53310 -12.26610 -12.19802 -12.07011 -12.01831 -11.77139 -11.66471 -11.61817 -11.53788 -11.42640 -11.22721 -11.02745 -10.91385 -10.57270 -10.26776 -9.64688 -9.09504 -8.68310 -5.34726 1.38449 1.49600 1.53297 1.68785 1.80448 2.53428 2.91206 2.98297 3.38559 3.44282 3.55414 3.66697 3.73342 3.80834 3.84081 4.05610 4.06623 4.13243 4.17711 4.24569 4.36163 4.41864 4.49299 4.52623 4.56421 4.60113 4.64043 4.64599 4.67366 4.71768 4.74440 4.79634 4.80446 4.88080 4.90164 4.91783 5.05514 5.07023 5.09681 5.10699 5.11782 5.18817 5.21757 5.26349 5.37567 5.40993 5.49949 5.50915 5.55451 5.62024 6.10217 6.12054 6.42593 6.84122 7.15003 7.52403 8.17089 8.83062 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.020364 B = 0.003098 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.619732 B = 9036.706516 C = 9534.890140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.110 4.110 3 C -0.102 4.102 4 H 0.098 0.902 5 C -0.144 4.144 6 C 0.081 3.919 7 H 0.117 0.883 8 O -0.384 6.384 9 C 0.018 3.982 10 C 0.505 3.495 11 O -0.577 6.577 12 N -0.602 5.602 13 C 0.120 3.880 14 C -0.107 4.107 15 C -0.059 4.059 16 C -0.109 4.109 17 C 0.107 3.893 18 N -0.629 5.629 19 C -0.321 4.321 20 H 0.046 0.954 21 C -0.070 4.070 22 N -0.949 5.949 23 Si 1.095 2.905 24 H -0.269 1.269 25 H -0.281 1.281 26 H -0.310 1.310 27 C 0.143 3.857 28 C -0.111 4.111 29 C 0.100 3.900 30 H 0.052 0.948 31 H 0.047 0.953 32 H 0.073 0.927 33 H 0.027 0.973 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.057 0.943 38 H 0.068 0.932 39 H 0.093 0.907 40 H 0.048 0.952 41 H 0.070 0.930 42 H 0.082 0.918 43 H 0.055 0.945 44 H 0.052 0.948 45 H 0.091 0.909 46 H 0.097 0.903 47 H 0.016 0.984 48 H 0.022 0.978 49 H 0.251 0.749 50 H 0.036 0.964 51 H 0.025 0.975 52 H 0.102 0.898 53 H 0.071 0.929 54 H 0.115 0.885 55 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.373 3.873 30.498 31.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.148 4.148 3 C -0.121 4.121 4 H 0.116 0.884 5 C -0.201 4.201 6 C 0.020 3.980 7 H 0.135 0.865 8 O -0.302 6.302 9 C -0.078 4.078 10 C 0.294 3.706 11 O -0.456 6.456 12 N -0.336 5.336 13 C -0.003 4.003 14 C -0.145 4.145 15 C -0.060 4.060 16 C -0.146 4.146 17 C -0.018 4.018 18 N -0.356 5.356 19 C -0.450 4.450 20 H 0.064 0.936 21 C -0.265 4.265 22 N -0.592 5.592 23 Si 0.923 3.077 24 H -0.195 1.195 25 H -0.208 1.208 26 H -0.238 1.238 27 C 0.018 3.982 28 C -0.149 4.149 29 C -0.021 4.021 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.092 0.908 33 H 0.046 0.954 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.111 0.889 40 H 0.067 0.933 41 H 0.089 0.911 42 H 0.101 0.899 43 H 0.074 0.926 44 H 0.071 0.929 45 H 0.109 0.891 46 H 0.115 0.885 47 H 0.034 0.966 48 H 0.040 0.960 49 H 0.060 0.940 50 H 0.054 0.946 51 H 0.044 0.956 52 H 0.121 0.879 53 H 0.089 0.911 54 H 0.133 0.867 55 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 7.829 2.970 29.340 30.511 hybrid contribution -1.760 -0.372 -0.113 1.803 sum 6.069 2.598 29.227 29.963 Atomic orbital electron populations 1.21793 0.94644 1.01659 1.02466 1.21372 0.96398 0.96242 1.00808 1.21694 0.91465 0.97391 1.01530 0.88433 1.21899 1.02726 1.00551 0.94956 1.22179 0.95307 0.95631 0.84889 0.86514 1.88013 1.74152 1.33744 1.34252 1.23179 0.97036 0.97690 0.89848 1.21315 0.77581 0.84642 0.87085 1.90675 1.44114 1.23443 1.87352 1.48169 1.63461 1.17004 1.04969 1.21520 0.96905 0.99775 0.82079 1.21536 0.97195 0.96483 0.99285 1.21030 0.94877 0.94529 0.95558 1.22663 0.99609 1.00728 0.91593 1.21810 0.85812 0.95906 0.98235 1.44930 1.12154 1.76615 1.01880 1.19877 0.94932 1.44605 0.85562 0.93638 1.26762 1.09260 0.99378 0.91145 1.70987 1.09940 1.45808 1.32427 0.83445 0.72986 0.77683 0.73538 1.19515 1.20760 1.23845 1.21758 0.95098 0.97802 0.83573 1.21739 0.97755 1.03375 0.92076 1.22211 0.95578 0.81719 1.02590 0.92849 0.93409 0.90813 0.95431 0.92152 0.90492 0.90974 0.92377 0.91360 0.88896 0.93319 0.91147 0.89947 0.92589 0.92929 0.89073 0.88491 0.96633 0.96003 0.94038 0.94637 0.95621 0.87919 0.91070 0.86739 0.88749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 9.69 71.98 0.70 -1.67 16 2 C -0.11 -2.14 4.99 30.59 0.15 -1.99 16 3 C -0.10 -1.40 1.79 -10.80 -0.02 -1.42 16 4 H 0.10 1.18 5.40 -2.39 -0.01 1.17 16 5 C -0.14 -1.20 7.84 71.98 0.56 -0.64 16 6 C 0.08 1.35 1.49 29.85 0.04 1.39 16 7 H 0.12 1.13 6.67 -2.38 -0.02 1.12 16 8 O -0.38 -7.75 8.84 -130.14 -1.15 -8.91 16 9 C 0.02 0.21 10.42 113.37 1.18 1.39 16 10 C 0.50 12.43 5.94 87.66 0.52 12.95 16 11 O -0.58 -20.19 15.94 15.81 0.25 -19.93 16 12 N -0.60 -12.58 2.96 -818.29 -2.42 -15.00 16 13 C 0.12 3.06 6.11 86.41 0.53 3.59 16 14 C -0.11 -3.13 4.87 30.41 0.15 -2.98 16 15 C -0.06 -1.57 0.55 -51.84 -0.03 -1.59 16 16 C -0.11 -2.91 4.91 31.56 0.16 -2.76 16 17 C 0.11 4.35 4.51 86.76 0.39 4.74 16 18 N -0.63 -29.98 3.33 -692.34 -2.30 -32.29 16 19 C -0.32 -18.81 10.40 84.03 0.87 -17.93 16 20 H 0.05 2.88 8.06 -2.91 -0.02 2.86 16 21 C -0.07 -4.25 5.42 84.86 0.46 -3.79 16 22 N -0.95 -61.55 13.70 21.65 0.30 -61.25 16 23 Si 1.10 54.80 24.67 68.60 1.69 56.49 16 24 H -0.27 -12.23 6.58 99.48 0.65 -11.58 16 25 H -0.28 -13.24 6.74 99.48 0.67 -12.57 16 26 H -0.31 -15.86 7.11 99.48 0.71 -15.15 16 27 C 0.14 5.27 6.16 86.63 0.53 5.80 16 28 C -0.11 -1.87 4.70 30.41 0.14 -1.72 16 29 C 0.10 1.31 5.23 86.41 0.45 1.76 16 30 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 31 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 32 H 0.07 0.90 6.72 -2.39 -0.02 0.88 16 33 H 0.03 0.72 7.20 -2.39 -0.02 0.70 16 34 H 0.06 1.27 7.76 -2.39 -0.02 1.25 16 35 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 36 H 0.07 0.53 6.87 -2.39 -0.02 0.51 16 37 H 0.06 0.55 7.04 -2.39 -0.02 0.54 16 38 H 0.07 0.45 6.57 -2.38 -0.02 0.43 16 39 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 40 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 41 H 0.07 2.10 7.02 -2.38 -0.02 2.09 16 42 H 0.08 1.90 6.55 -2.38 -0.02 1.89 16 43 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 44 H 0.05 1.89 7.81 -2.39 -0.02 1.87 16 45 H 0.09 2.07 6.17 -2.39 -0.01 2.05 16 46 H 0.10 2.11 7.98 -2.38 -0.02 2.09 16 47 H 0.02 0.69 4.01 -2.39 -0.01 0.68 16 48 H 0.02 0.96 7.57 -2.39 -0.02 0.94 16 49 H 0.25 16.29 8.73 -92.71 -0.81 15.48 16 50 H 0.04 1.26 8.00 -2.39 -0.02 1.24 16 51 H 0.03 1.01 8.03 -2.38 -0.02 0.99 16 52 H 0.10 1.36 8.09 -2.39 -0.02 1.34 16 53 H 0.07 1.21 7.45 -2.39 -0.02 1.19 16 54 H 0.11 0.82 4.67 -2.39 -0.01 0.81 16 55 H 0.09 0.97 7.62 -2.39 -0.02 0.95 16 Total: -1.00 -80.90 395.75 3.90 -77.00 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: 0.74 Total: 8.76 kcal Atomic # 6 Polarization: -11.67 SS G_CDS: 6.80 Total: -4.87 kcal Atomic # 7 Polarization: -104.11 SS G_CDS: -4.43 Total: -108.54 kcal Atomic # 8 Polarization: -27.94 SS G_CDS: -0.90 Total: -28.84 kcal Atomic # 14 Polarization: 54.80 SS G_CDS: 1.69 Total: 56.49 kcal Total: -80.90 3.90 -77.00 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715215796.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.610 kcal (2) G-P(sol) polarization free energy of solvation -80.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.26 seconds