Wall clock time and date at job start Tue Mar 31 2020 23:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46698 * 2 1 4 4 H 1.08997 * 109.47245 * 54.92838 * 3 2 1 5 5 C 1.52998 * 109.47539 * 294.92567 * 3 2 1 6 6 C 1.53007 * 109.46759 * 174.92270 * 3 2 1 7 7 H 1.08997 * 109.46945 * 304.97852 * 6 3 2 8 8 O 1.42899 * 109.46869 * 64.97748 * 6 3 2 9 9 C 1.42895 * 114.00245 * 260.68111 * 8 6 3 10 10 C 1.50703 * 109.46800 * 184.97761 * 6 3 2 11 11 O 1.21284 * 119.99677 * 255.72307 * 10 6 3 12 12 N 1.34773 * 120.00157 * 75.72700 * 10 6 3 13 13 C 1.46940 * 120.55338 * 175.15846 * 12 10 6 14 14 C 1.53344 * 108.68539 * 125.62391 * 13 12 10 15 15 C 1.52110 * 109.43852 * 53.30414 * 14 13 12 16 16 C 1.54393 * 110.50713 * 64.09131 * 15 14 13 17 17 C 1.54453 * 102.87022 * 83.32948 * 16 15 14 18 18 N 1.47081 * 107.30165 * 21.50519 * 17 16 15 19 19 C 1.36931 * 125.63180 * 180.97113 * 18 17 16 20 20 H 1.08003 * 120.00184 * 185.27255 * 19 18 17 21 21 C 1.38813 * 119.99908 * 5.26979 * 19 18 17 22 22 N 1.31615 * 120.00081 * 5.68289 * 21 19 18 23 23 Si 1.86797 * 119.99847 * 185.68865 * 21 19 18 24 24 H 1.48504 * 109.47313 * 265.00389 * 23 21 19 25 25 H 1.48505 * 109.47407 * 25.00373 * 23 21 19 26 26 H 1.48498 * 109.47148 * 145.00156 * 23 21 19 27 27 C 1.47580 * 108.74036 * 1.22973 * 18 17 16 28 28 C 1.52106 * 111.60303 * 300.68967 * 15 14 13 29 29 C 1.46934 * 120.55091 * 355.13279 * 12 10 6 30 30 H 1.09002 * 109.47008 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47035 * 299.99358 * 1 2 3 32 32 H 1.09002 * 109.47368 * 60.00197 * 1 2 3 33 33 H 1.08997 * 109.47035 * 240.00642 * 2 1 3 34 34 H 1.08997 * 109.46903 * 120.00368 * 2 1 3 35 35 H 1.08992 * 109.47447 * 59.99663 * 5 3 2 36 36 H 1.08998 * 109.47513 * 180.02562 * 5 3 2 37 37 H 1.09000 * 109.46775 * 299.99949 * 5 3 2 38 38 H 1.09000 * 109.47385 * 185.83138 * 9 8 6 39 39 H 1.09005 * 109.46808 * 305.83183 * 9 8 6 40 40 H 1.09004 * 109.47029 * 65.82894 * 9 8 6 41 41 H 1.09002 * 109.60000 * 5.87165 * 13 12 10 42 42 H 1.08998 * 109.59769 * 245.38563 * 13 12 10 43 43 H 1.08997 * 109.47689 * 293.31824 * 14 13 12 44 44 H 1.08993 * 109.47665 * 173.29605 * 14 13 12 45 45 H 1.08990 * 110.73484 * 324.98068 * 16 15 14 46 46 H 1.09000 * 110.72789 * 201.67142 * 16 15 14 47 47 H 1.08996 * 109.87610 * 262.07815 * 17 16 15 48 48 H 1.08998 * 109.87832 * 140.92901 * 17 16 15 49 49 H 0.97000 * 119.99927 * 179.97438 * 22 21 19 50 50 H 1.09004 * 110.37364 * 95.26278 * 27 18 17 51 51 H 1.08996 * 110.37778 * 217.60818 * 27 18 17 52 52 H 1.09003 * 109.47242 * 179.29506 * 28 15 14 53 53 H 1.08997 * 109.47665 * 299.31420 * 28 15 14 54 54 H 1.08995 * 109.59775 * 354.13263 * 29 12 10 55 55 H 1.08997 * 109.59442 * 114.61044 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6043 1.9819 0.8410 5 6 1.6368 2.1261 -1.3081 6 6 3.5647 1.4444 0.1277 7 1 3.8557 0.8809 1.0141 8 8 4.1404 0.8394 -1.0318 9 6 4.5211 -0.5255 -0.8470 10 6 4.0566 2.8636 0.2506 11 8 4.5832 3.4071 -0.6972 12 7 3.9115 3.5287 1.4138 13 6 4.4800 4.8733 1.5813 14 6 3.3654 5.8254 2.0314 15 6 2.6769 5.2532 3.2612 16 6 3.6628 5.1771 4.4468 17 6 3.6111 6.6066 5.0295 18 7 2.3456 7.2130 4.5891 19 6 1.9270 8.4843 4.8783 20 1 0.9413 8.8094 4.5794 21 6 2.7694 9.3552 5.5556 22 7 4.0083 8.9991 5.8212 23 14 2.1446 11.0324 6.0902 24 1 2.5045 12.0446 5.0649 25 1 0.6681 10.9853 6.2424 26 1 2.7644 11.4008 7.3884 27 6 1.5984 6.2229 3.7894 28 6 2.0747 3.8850 2.9801 29 6 3.1817 2.9217 2.5353 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 0.5507 2.1247 -1.3991 36 1 2.0004 3.1536 -1.3083 37 1 2.0725 1.5867 -2.1491 38 1 5.0424 -0.8809 -1.7358 39 1 5.1807 -0.6048 0.0172 40 1 3.6305 -1.1318 -0.6812 41 1 4.8930 5.2165 0.6327 42 1 5.2654 4.8467 2.3366 43 1 2.6381 5.9392 1.2277 44 1 3.7940 6.7977 2.2742 45 1 4.6676 4.9385 4.0985 46 1 3.3251 4.4478 5.1832 47 1 4.4519 7.1902 4.6546 48 1 3.6427 6.5644 6.1182 49 1 4.5971 9.6078 6.2942 50 1 0.8814 5.6923 4.4158 51 1 1.0892 6.7122 2.9591 52 1 1.6024 3.5029 3.8851 53 1 1.3291 3.9715 2.1897 54 1 2.7390 1.9784 2.2156 55 1 3.8670 2.7444 3.3641 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715215797.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:43 Heat of formation + Delta-G solvation = -81.240065 kcal Electronic energy + Delta-G solvation = -32179.944749 eV Core-core repulsion = 28216.604230 eV Total energy + Delta-G solvation = -3963.340519 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.87881 -40.38796 -38.82956 -37.23308 -36.28667 -34.76852 -32.66727 -32.35828 -31.11502 -30.41421 -28.79886 -28.06181 -27.16630 -26.03095 -25.04529 -24.06280 -23.59981 -21.95688 -21.16056 -20.94984 -19.34659 -18.55215 -18.19435 -17.59865 -17.12018 -16.77204 -16.56489 -16.35641 -16.09150 -15.63983 -15.55898 -15.24215 -14.93951 -14.74224 -14.51678 -14.40083 -14.22567 -13.99611 -13.90199 -13.69983 -13.40697 -13.12800 -13.00174 -12.99562 -12.82485 -12.74027 -12.57813 -12.31950 -12.28433 -12.19660 -12.03803 -12.02719 -11.91771 -11.78792 -11.62710 -11.48118 -11.37492 -11.21446 -11.10429 -10.82723 -10.68935 -10.27789 -9.61524 -8.83102 -7.81530 -5.17899 1.44722 1.45588 1.54807 1.55036 1.79008 2.50119 2.93672 3.34174 3.41998 3.61815 3.68324 3.74028 3.83298 3.89738 3.91894 4.09107 4.15131 4.21874 4.23671 4.29559 4.48503 4.53373 4.54242 4.58046 4.62658 4.67478 4.71185 4.72881 4.74224 4.78964 4.81967 4.82904 4.90378 4.93016 4.99203 5.04758 5.11448 5.12923 5.18137 5.20790 5.24061 5.26086 5.41565 5.41913 5.47759 5.50311 5.55049 5.63351 5.71272 5.86724 6.11288 6.24833 6.44666 7.13449 7.15956 7.82242 8.46529 9.26381 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.022026 B = 0.002719 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.896062 B =10295.055387 C =10755.598056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.115 4.115 3 C -0.105 4.105 4 H 0.097 0.903 5 C -0.139 4.139 6 C 0.082 3.918 7 H 0.114 0.886 8 O -0.384 6.384 9 C 0.016 3.984 10 C 0.508 3.492 11 O -0.576 6.576 12 N -0.602 5.602 13 C 0.121 3.879 14 C -0.100 4.100 15 C -0.056 4.056 16 C -0.118 4.118 17 C 0.182 3.818 18 N -0.624 5.624 19 C -0.238 4.238 20 H 0.077 0.923 21 C -0.066 4.066 22 N -0.948 5.948 23 Si 0.973 3.027 24 H -0.290 1.290 25 H -0.269 1.269 26 H -0.294 1.294 27 C 0.140 3.860 28 C -0.110 4.110 29 C 0.100 3.900 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.050 0.950 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.024 0.976 37 H 0.053 0.947 38 H 0.092 0.908 39 H 0.053 0.947 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.077 0.923 43 H 0.054 0.946 44 H 0.048 0.952 45 H 0.075 0.925 46 H 0.080 0.920 47 H 0.019 0.981 48 H -0.010 1.010 49 H 0.245 0.755 50 H 0.032 0.968 51 H 0.029 0.971 52 H 0.100 0.900 53 H 0.071 0.929 54 H 0.116 0.884 55 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.315 -25.469 -9.231 27.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.152 4.152 3 C -0.124 4.124 4 H 0.115 0.885 5 C -0.196 4.196 6 C 0.021 3.979 7 H 0.132 0.868 8 O -0.303 6.303 9 C -0.080 4.080 10 C 0.296 3.704 11 O -0.455 6.455 12 N -0.336 5.336 13 C -0.001 4.001 14 C -0.139 4.139 15 C -0.057 4.057 16 C -0.156 4.156 17 C 0.057 3.943 18 N -0.350 5.350 19 C -0.367 4.367 20 H 0.095 0.905 21 C -0.260 4.260 22 N -0.598 5.598 23 Si 0.801 3.199 24 H -0.217 1.217 25 H -0.194 1.194 26 H -0.221 1.221 27 C 0.015 3.985 28 C -0.148 4.148 29 C -0.021 4.021 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.043 0.957 37 H 0.072 0.928 38 H 0.110 0.890 39 H 0.071 0.929 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.095 0.905 43 H 0.073 0.927 44 H 0.067 0.933 45 H 0.094 0.906 46 H 0.099 0.901 47 H 0.037 0.963 48 H 0.008 0.992 49 H 0.054 0.946 50 H 0.050 0.950 51 H 0.048 0.952 52 H 0.118 0.882 53 H 0.090 0.910 54 H 0.134 0.866 55 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.947 -24.922 -9.812 27.073 hybrid contribution 0.147 1.837 0.586 1.934 sum -3.800 -23.085 -9.225 25.149 Atomic orbital electron populations 1.21819 0.94925 1.02259 1.02114 1.21644 0.96741 0.93801 1.03039 1.21746 0.91612 0.99247 0.99748 0.88460 1.21691 1.01428 0.98873 0.97592 1.22146 0.94613 0.90105 0.91011 0.86809 1.88011 1.81048 1.27132 1.34063 1.23244 1.00424 0.81230 1.03111 1.21205 0.78263 0.89222 0.81682 1.90671 1.45659 1.70170 1.38988 1.48169 1.54819 1.16940 1.13640 1.21492 0.95563 0.81721 1.01348 1.21451 0.97627 0.97984 0.96796 1.20971 0.95357 0.95517 0.93885 1.22773 0.99374 0.96489 0.96974 1.20967 0.88179 0.90710 0.94482 1.44792 1.19615 1.10520 1.60091 1.19411 0.98500 0.88419 1.30418 0.90471 1.25588 0.96152 1.01903 1.02309 1.70184 1.06060 1.36668 1.46838 0.85144 0.77842 0.79888 0.76979 1.21677 1.19384 1.22069 1.21761 0.93723 0.90066 0.92922 1.21718 0.97578 0.92571 1.02978 1.22202 0.94255 0.96891 0.88744 0.91763 0.92101 0.93100 0.91491 0.89871 0.91087 0.95689 0.92787 0.88975 0.92863 0.91373 0.91152 0.90498 0.92684 0.93279 0.90627 0.90120 0.96286 0.99190 0.94605 0.94975 0.95235 0.88165 0.91049 0.86630 0.89301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.67 71.98 0.70 -0.72 16 2 C -0.11 -1.11 4.35 30.60 0.13 -0.97 16 3 C -0.10 -1.55 1.80 -10.79 -0.02 -1.57 16 4 H 0.10 1.27 6.11 -2.39 -0.01 1.26 16 5 C -0.14 -2.78 8.57 71.98 0.62 -2.16 16 6 C 0.08 1.50 1.52 29.85 0.05 1.55 16 7 H 0.11 1.33 6.76 -2.39 -0.02 1.32 16 8 O -0.38 -8.26 8.85 -130.43 -1.15 -9.41 16 9 C 0.02 0.19 10.48 113.37 1.19 1.38 16 10 C 0.51 13.59 6.00 87.66 0.53 14.12 16 11 O -0.58 -21.30 15.90 15.51 0.25 -21.05 16 12 N -0.60 -14.33 2.96 -818.27 -2.42 -16.76 16 13 C 0.12 3.54 6.13 86.41 0.53 4.07 16 14 C -0.10 -3.30 4.87 30.42 0.15 -3.15 16 15 C -0.06 -1.70 0.55 -51.84 -0.03 -1.73 16 16 C -0.12 -3.88 4.92 31.56 0.16 -3.73 16 17 C 0.18 8.75 5.05 86.76 0.44 9.19 16 18 N -0.62 -31.59 3.38 -692.30 -2.34 -33.93 16 19 C -0.24 -13.44 10.27 84.03 0.86 -12.58 16 20 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 21 C -0.07 -3.83 5.46 84.86 0.46 -3.37 16 22 N -0.95 -57.56 10.41 21.65 0.23 -57.34 16 23 Si 0.97 46.46 29.56 68.60 2.03 48.49 16 24 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 25 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 26 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 27 C 0.14 5.45 6.16 86.63 0.53 5.98 16 28 C -0.11 -2.19 4.84 30.41 0.15 -2.05 16 29 C 0.10 1.63 5.32 86.41 0.46 2.09 16 30 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.05 0.55 6.57 -2.39 -0.02 0.54 16 33 H 0.07 0.71 6.40 -2.39 -0.02 0.69 16 34 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.07 1.18 6.57 -2.39 -0.02 1.16 16 36 H 0.02 0.64 7.31 -2.39 -0.02 0.62 16 37 H 0.05 1.18 7.56 -2.39 -0.02 1.16 16 38 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.05 0.53 7.98 -2.38 -0.02 0.51 16 40 H 0.07 0.54 5.81 -2.39 -0.01 0.53 16 41 H 0.07 2.33 6.99 -2.39 -0.02 2.31 16 42 H 0.08 2.16 6.55 -2.39 -0.02 2.14 16 43 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.05 2.00 7.81 -2.39 -0.02 1.98 16 45 H 0.08 2.27 6.17 -2.39 -0.01 2.26 16 46 H 0.08 2.29 7.98 -2.39 -0.02 2.27 16 47 H 0.02 1.06 6.95 -2.39 -0.02 1.04 16 48 H -0.01 -0.55 7.91 -2.39 -0.02 -0.57 16 49 H 0.24 14.50 8.31 -92.71 -0.77 13.73 16 50 H 0.03 1.18 8.00 -2.38 -0.02 1.16 16 51 H 0.03 1.18 8.03 -2.39 -0.02 1.16 16 52 H 0.10 1.64 8.09 -2.39 -0.02 1.62 16 53 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 54 H 0.12 1.15 4.43 -2.39 -0.01 1.14 16 55 H 0.09 1.27 7.62 -2.39 -0.02 1.25 16 Total: -1.00 -76.77 400.92 4.33 -72.43 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: 0.86 Total: 11.21 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: 6.90 Total: 6.35 kcal Atomic # 7 Polarization: -103.49 SS G_CDS: -4.54 Total: -108.03 kcal Atomic # 8 Polarization: -29.56 SS G_CDS: -0.91 Total: -30.46 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal Total: -76.77 4.33 -72.43 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715215797.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.809 kcal (2) G-P(sol) polarization free energy of solvation -76.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds