Wall clock time and date at job start Wed Apr 1 2020 00:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47520 * 2 1 4 4 H 1.08994 * 109.47112 * 56.59236 * 3 2 1 5 5 O 1.42897 * 109.46838 * 296.59541 * 3 2 1 6 6 C 1.42902 * 114.00046 * 152.35395 * 5 3 2 7 7 C 1.54269 * 110.03021 * 266.51443 * 6 5 3 8 8 C 1.54885 * 104.19508 * 217.10379 * 7 6 5 9 9 C 1.54887 * 102.75118 * 37.94387 * 8 7 6 10 10 C 1.53880 * 110.03280 * 149.34807 * 6 5 3 11 11 C 1.50696 * 109.46986 * 176.59478 * 3 2 1 12 12 O 1.21287 * 119.99952 * 115.00215 * 11 3 2 13 13 N 1.34771 * 120.00253 * 295.00064 * 11 3 2 14 14 C 1.46499 * 120.00109 * 180.02562 * 13 11 3 15 15 C 1.52998 * 109.46517 * 59.99703 * 14 13 11 16 16 C 1.53040 * 109.45744 * 300.01890 * 14 13 11 17 17 C 1.53162 * 109.33032 * 301.36092 * 16 14 13 18 18 N 1.46918 * 108.76734 * 305.35409 * 17 16 14 19 19 C 1.36937 * 120.62920 * 233.62885 * 18 17 16 20 20 H 1.08002 * 119.99883 * 149.69595 * 19 18 17 21 21 C 1.38812 * 120.00178 * 329.68933 * 19 18 17 22 22 N 1.31626 * 119.99852 * 160.85761 * 21 19 18 23 23 Si 1.86797 * 119.99958 * 340.86111 * 21 19 18 24 24 H 1.48504 * 109.46977 * 91.54416 * 23 21 19 25 25 H 1.48503 * 109.46856 * 211.54240 * 23 21 19 26 26 H 1.48499 * 109.47281 * 331.54636 * 23 21 19 27 27 C 1.46925 * 118.74177 * 53.61240 * 18 17 16 28 28 C 1.53040 * 109.45960 * 179.97438 * 14 13 11 29 29 H 1.09001 * 109.47047 * 61.35967 * 1 2 3 30 30 H 1.08996 * 109.47431 * 181.36339 * 1 2 3 31 31 H 1.09000 * 109.46902 * 301.36427 * 1 2 3 32 32 H 1.09006 * 109.46702 * 120.00064 * 2 1 3 33 33 H 1.09006 * 109.46977 * 239.99447 * 2 1 3 34 34 H 1.08991 * 110.01534 * 27.95567 * 6 5 3 35 35 H 1.08995 * 110.48880 * 335.78147 * 7 6 5 36 36 H 1.09001 * 110.48633 * 98.42570 * 7 6 5 37 37 H 1.08998 * 110.75744 * 279.62953 * 8 7 6 38 38 H 1.08997 * 110.91901 * 156.33239 * 8 7 6 39 39 H 1.08998 * 110.49267 * 203.38050 * 9 8 7 40 40 H 1.08999 * 110.48805 * 80.73069 * 9 8 7 41 41 H 1.09000 * 110.02637 * 238.56713 * 10 6 5 42 42 H 1.08999 * 110.03067 * 359.94913 * 10 6 5 43 43 H 0.96996 * 119.99980 * 359.97438 * 13 11 3 44 44 H 1.08999 * 109.47219 * 59.99673 * 15 14 13 45 45 H 1.08994 * 109.47214 * 180.02562 * 15 14 13 46 46 H 1.09008 * 109.46566 * 300.00103 * 15 14 13 47 47 H 1.09000 * 109.49669 * 61.30330 * 16 14 13 48 48 H 1.09004 * 109.49889 * 181.39272 * 16 14 13 49 49 H 1.08997 * 109.58882 * 185.56367 * 17 16 14 50 50 H 1.09001 * 109.70368 * 65.21364 * 17 16 14 51 51 H 0.97003 * 119.99582 * 179.97438 * 22 21 19 52 52 H 1.08996 * 109.58881 * 186.60449 * 27 18 17 53 53 H 1.09000 * 109.70785 * 66.24110 * 27 18 17 54 54 H 1.08998 * 109.49782 * 178.60480 * 28 14 13 55 55 H 1.09003 * 109.50014 * 298.66769 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6279 1.9736 0.8578 5 8 1.6303 2.0926 -1.2047 6 6 1.4791 3.5080 -1.0789 7 6 0.0139 3.8551 -0.7435 8 6 -0.2556 5.1633 -1.5277 9 6 0.5145 4.9330 -2.8517 10 6 1.7974 4.1933 -2.4194 11 6 3.5447 1.4432 0.0844 12 8 4.2038 1.8684 -0.8407 13 7 4.1580 0.9713 1.1878 14 6 5.6207 0.9725 1.2700 15 6 6.1372 2.4072 1.1449 16 6 6.1959 0.1226 0.1346 17 6 5.6498 -1.3043 0.2427 18 7 5.9381 -1.8201 1.5877 19 6 6.5952 -3.0102 1.7525 20 1 7.2223 -3.1655 2.6180 21 6 6.4551 -4.0171 0.8072 22 7 7.3413 -4.9883 0.7440 23 14 5.0092 -3.9935 -0.3752 24 1 5.3944 -3.2704 -1.6138 25 1 4.6248 -5.3871 -0.7148 26 1 3.8591 -3.3042 0.2629 27 6 5.5085 -1.0348 2.7528 28 6 6.0562 0.3894 2.6163 29 1 -0.3633 0.4926 -0.9019 30 1 -0.3634 -1.0273 0.0245 31 1 -0.3633 0.5349 0.8775 32 1 1.8933 -0.5139 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 2.1409 3.8861 -0.2998 35 1 -0.6532 3.0627 -1.0828 36 1 -0.1033 4.0213 0.3274 37 1 0.1452 6.0241 -0.9924 38 1 -1.3213 5.2906 -1.7179 39 1 0.7628 5.8858 -3.3193 40 1 -0.0716 4.3146 -3.5314 41 1 2.6132 4.9047 -2.2905 42 1 2.0681 3.4463 -3.1656 43 1 3.6310 0.6315 1.9278 44 1 5.7273 3.0127 1.9532 45 1 7.2255 2.4082 1.2056 46 1 5.8267 2.8227 0.1862 47 1 5.9048 0.5516 -0.8242 48 1 7.2831 0.1028 0.2098 49 1 6.1314 -1.9373 -0.5026 50 1 4.5726 -1.2991 0.0763 51 1 7.2432 -5.6921 0.0837 52 1 5.8970 -1.4899 3.6637 53 1 4.4197 -1.0050 2.7947 54 1 7.1447 0.3670 2.6681 55 1 5.6661 1.0085 3.4242 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716798110.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:06:10 Heat of formation + Delta-G solvation = -96.750609 kcal Electronic energy + Delta-G solvation = -32459.365678 eV Core-core repulsion = 28495.352571 eV Total energy + Delta-G solvation = -3964.013107 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.73257 -40.15137 -38.82834 -37.12643 -36.16988 -34.51819 -33.73952 -32.46667 -32.00563 -29.63599 -29.33761 -28.92221 -27.65673 -25.73386 -24.41540 -23.44019 -22.80193 -21.81853 -21.45057 -21.26577 -20.29832 -18.97205 -18.46963 -18.08377 -17.23421 -16.85260 -16.44915 -15.96561 -15.84424 -15.77944 -15.48124 -15.27067 -15.23088 -14.94494 -14.75393 -14.48260 -14.28620 -14.25658 -13.72078 -13.58507 -13.51462 -13.21770 -13.13999 -12.93612 -12.90306 -12.73461 -12.64571 -12.58297 -12.20665 -12.06453 -12.05266 -12.01839 -11.96029 -11.84141 -11.65507 -11.54436 -11.46743 -11.45084 -11.36206 -11.00076 -10.77178 -10.05407 -9.98467 -8.88406 -8.20231 -5.52799 1.27077 1.33449 1.42434 1.61675 2.12702 2.37878 2.69047 3.03098 3.34213 3.58275 3.63944 3.68729 3.84358 3.87324 3.89957 3.97712 4.02557 4.05407 4.24028 4.31483 4.36021 4.42962 4.49764 4.52909 4.59370 4.62560 4.66641 4.69955 4.79495 4.80072 4.81539 4.83667 4.90208 4.94233 4.98668 5.03369 5.06026 5.08948 5.10749 5.12459 5.16606 5.19264 5.22862 5.29025 5.32189 5.38443 5.40478 5.45629 5.68125 5.87650 6.12382 6.19992 6.66755 6.91176 7.32308 7.60731 8.03553 8.99805 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015628 B = 0.003527 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.191491 B = 7937.508279 C = 8711.453889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.119 4.119 3 C 0.082 3.918 4 H 0.115 0.885 5 O -0.365 6.365 6 C 0.081 3.919 7 C -0.141 4.141 8 C -0.118 4.118 9 C -0.120 4.120 10 C -0.124 4.124 11 C 0.484 3.516 12 O -0.559 6.559 13 N -0.706 5.706 14 C 0.187 3.813 15 C -0.149 4.149 16 C -0.136 4.136 17 C 0.138 3.862 18 N -0.615 5.615 19 C -0.241 4.241 20 H 0.058 0.942 21 C -0.030 4.030 22 N -0.956 5.956 23 Si 0.940 3.060 24 H -0.294 1.294 25 H -0.309 1.309 26 H -0.255 1.255 27 C 0.141 3.859 28 C -0.125 4.125 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.045 0.955 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.054 0.946 43 H 0.410 0.590 44 H 0.074 0.926 45 H 0.065 0.935 46 H 0.054 0.946 47 H 0.062 0.938 48 H 0.058 0.942 49 H 0.032 0.968 50 H 0.024 0.976 51 H 0.260 0.740 52 H 0.064 0.936 53 H 0.044 0.956 54 H 0.070 0.930 55 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.890 22.695 2.112 28.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.157 4.157 3 C 0.021 3.979 4 H 0.132 0.868 5 O -0.282 6.282 6 C 0.023 3.977 7 C -0.179 4.179 8 C -0.156 4.156 9 C -0.158 4.158 10 C -0.162 4.162 11 C 0.271 3.729 12 O -0.437 6.437 13 N -0.360 5.360 14 C 0.101 3.899 15 C -0.207 4.207 16 C -0.176 4.176 17 C 0.013 3.987 18 N -0.340 5.340 19 C -0.371 4.371 20 H 0.076 0.924 21 C -0.225 4.225 22 N -0.603 5.603 23 Si 0.770 3.230 24 H -0.222 1.222 25 H -0.238 1.238 26 H -0.179 1.179 27 C 0.017 3.983 28 C -0.164 4.164 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.106 0.894 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.073 0.927 43 H 0.247 0.753 44 H 0.092 0.908 45 H 0.084 0.916 46 H 0.073 0.927 47 H 0.081 0.919 48 H 0.077 0.923 49 H 0.051 0.949 50 H 0.042 0.958 51 H 0.069 0.931 52 H 0.082 0.918 53 H 0.061 0.939 54 H 0.089 0.911 55 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -17.424 22.773 1.231 28.700 hybrid contribution 0.104 -1.016 -0.641 1.205 sum -17.321 21.757 0.591 27.816 Atomic orbital electron populations 1.21656 0.92519 1.02474 1.02959 1.21611 0.98912 0.92445 1.02729 1.22175 0.88859 0.96504 0.90375 0.86791 1.88057 1.86805 1.20622 1.32765 1.22986 0.96732 0.80090 0.97856 1.22886 0.95115 0.98661 1.01198 1.22432 1.00944 0.96916 0.95281 1.22339 0.95190 1.00196 0.98048 1.22198 0.98898 0.98786 0.96311 1.21870 0.92042 0.76987 0.82026 1.90628 1.67305 1.47454 1.38347 1.46121 1.07099 1.63519 1.19259 1.20157 0.79377 0.95065 0.95267 1.22085 1.01350 0.94648 1.02636 1.22263 1.00141 0.95491 0.99683 1.21092 0.96653 0.93936 0.87027 1.44445 1.67413 1.21012 1.01150 1.18884 1.19673 0.90180 1.08391 0.92437 1.25890 0.99940 0.95935 1.00770 1.69944 1.36173 1.15887 1.38248 0.86006 0.82860 0.74946 0.79205 1.22240 1.23796 1.17889 1.21163 0.97165 0.90644 0.89335 1.22219 1.02007 0.96797 0.95415 0.92413 0.92071 0.90526 0.89397 0.93570 0.92455 0.90669 0.90051 0.90618 0.90000 0.90486 0.91697 0.91399 0.92731 0.75338 0.90755 0.91596 0.92738 0.91916 0.92304 0.94940 0.95786 0.93071 0.91791 0.93855 0.91145 0.87769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 9.78 71.98 0.70 -1.67 16 2 C -0.12 -2.67 5.61 30.60 0.17 -2.50 16 3 C 0.08 1.84 2.36 29.85 0.07 1.91 16 4 H 0.11 1.76 7.84 -2.39 -0.02 1.74 16 5 O -0.36 -9.27 8.59 -129.99 -1.12 -10.38 16 6 C 0.08 1.64 3.13 31.32 0.10 1.74 16 7 C -0.14 -2.00 6.56 31.67 0.21 -1.79 16 8 C -0.12 -1.41 6.91 31.88 0.22 -1.19 16 9 C -0.12 -1.79 6.83 31.67 0.22 -1.58 16 10 C -0.12 -2.58 6.61 31.32 0.21 -2.37 16 11 C 0.48 13.78 6.46 87.66 0.57 14.34 16 12 O -0.56 -20.29 12.70 15.94 0.20 -20.09 16 13 N -0.71 -17.94 4.02 -422.81 -1.70 -19.64 16 14 C 0.19 5.40 0.66 3.63 0.00 5.40 16 15 C -0.15 -3.82 8.40 71.98 0.60 -3.21 16 16 C -0.14 -5.19 4.66 30.66 0.14 -5.05 16 17 C 0.14 6.18 3.95 86.35 0.34 6.52 16 18 N -0.62 -28.10 2.73 -699.19 -1.91 -30.00 16 19 C -0.24 -13.55 10.02 84.03 0.84 -12.71 16 20 H 0.06 3.48 8.06 -2.91 -0.02 3.46 16 21 C -0.03 -1.81 5.23 84.86 0.44 -1.36 16 22 N -0.96 -61.02 13.97 21.65 0.30 -60.71 16 23 Si 0.94 48.52 24.36 68.60 1.67 50.19 16 24 H -0.29 -15.33 6.62 99.48 0.66 -14.67 16 25 H -0.31 -16.09 7.11 99.48 0.71 -15.38 16 26 H -0.25 -12.25 6.72 99.48 0.67 -11.58 16 27 C 0.14 4.77 6.24 86.36 0.54 5.31 16 28 C -0.13 -3.34 4.96 30.67 0.15 -3.19 16 29 H 0.06 1.06 7.81 -2.39 -0.02 1.04 16 30 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.09 1.84 7.81 -2.38 -0.02 1.82 16 33 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 34 H 0.06 1.18 7.76 -2.39 -0.02 1.16 16 35 H 0.07 1.14 8.08 -2.39 -0.02 1.12 16 36 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.08 0.78 8.14 -2.39 -0.02 0.77 16 38 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.05 1.40 7.95 -2.39 -0.02 1.38 16 43 H 0.41 8.20 6.99 -92.71 -0.65 7.56 16 44 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.05 1.64 6.17 -2.38 -0.01 1.63 16 47 H 0.06 2.57 6.20 -2.39 -0.01 2.55 16 48 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 49 H 0.03 1.68 4.75 -2.39 -0.01 1.67 16 50 H 0.02 1.07 6.66 -2.39 -0.02 1.06 16 51 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 52 H 0.06 2.19 7.93 -2.39 -0.02 2.17 16 53 H 0.04 1.28 6.94 -2.39 -0.02 1.26 16 54 H 0.07 2.05 8.14 -2.39 -0.02 2.04 16 55 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -73.72 408.46 3.10 -70.62 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: 0.11 Total: 21.42 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: 5.53 Total: -1.40 kcal Atomic # 7 Polarization: -107.05 SS G_CDS: -3.30 Total: -110.35 kcal Atomic # 8 Polarization: -29.56 SS G_CDS: -0.91 Total: -30.48 kcal Atomic # 14 Polarization: 48.52 SS G_CDS: 1.67 Total: 50.19 kcal Total: -73.72 3.10 -70.62 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716798110.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.127 kcal (2) G-P(sol) polarization free energy of solvation -73.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds